Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Forward (+)

51592288 .. 51597438

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGCTGGGTAAAGCTCCTGCTCCAGTAGTAAACCACCTATGGCCAAAACGCATTGACCCAGAATGGATGGTGGCTCAGCACCACTGCAGGTGTACTGTCCACCCCCATCAGATTAGAAAATGGGGAATAAGTTGCAGTTTGGGTCAGAAAGCCATGGATAACTCTGCTGCTGCTTACGACCTTATGGATGATTTCATTGTATTGGGAGCAACCAAGAATGACTCTTCTGAAGTCCGTGACTCCCCCAAAACCAATACCAGAGATAATGACCGTCAACAGGCGGCAACTACTAGGAGAGTTGCCAAAGTTGGGGGAAGTTTTGGGAGATTGAAAGTGCAAAGAGTGAAATCTGTAGTGGATAAAGCTTCTCGGGTGAAGCGAGACATGGATGAAAGTGAAAATGAACTAGATGTGCAGGATACATCACCATTTATCTCTACAATTGAAGGTATGGGGAAGAAGAAGAAAGCAAATGCCATGGGTCGTGGAGGGAGACTTTCAAATCCTTCCAACTCACATGAGTTTAGGGACGCATTGCATAAGAAGGAACCAACAGATTACAAGGACAATTCTAGAGTAACTACGAAAGATTTTTTTGAGCCACTCCCTGAGAGTCGGCATAAACCATATATGCGTCAGAAGCCTAACACCATCGTAGACCGACGAAAGGCTTCAGTTTCAAGAAAAGGATGGGGTAGTGGAGGGTCCATACGTGAAGCATCAGAGTATCCAGACCAAGACCATCGAAGGAGAGTGTCCAATGATGGTGGCTTTTTCAGTCGAAAATCCTTTAGGGATGTGGGATGCAGTGAGTATATGATTGAATGTCTAAGGAAGCAGCTTTTCCAGCGTCCATCACATATTCAGGCCATGGCGTTTGCTCCAGTTGTTGCTGGAAAAACCTCTATTATAGCTGACCAAAGTGGATCTGGCAAAACATTGGCTTATCTTGCTCCTGTCATTCAGCGTTTAAGGGATGAAGAACTTCAAGGACTGAGCAAGTCCTCATCACAGAGTCCTCGATTAGTTGTATTAGTTCCGACTGCTGAATTGGCTTCTCAGGTTTTGGGTAATTGCCGATCAATATCAAAATTTGGAGTTCCTGTCAGGTCTATGGTTGTAACAGGCGGTCATCGACAGAAAACTCAGCTGGAAAGTTTGCAAGAAGGTGTTGATGTTCTAATTGCAACCCCAGGTCGATTTATATATCTAATTAAGGAGGGCTTCTTGCAATTGTCAAATCTAAGATGTGCTGTGCTGGATGAGGTAGATATACTCTTTAATGATGAGGATTTTGAAGCAGCACTGCAAAGTTTAATCAATTCCGCACCTGTAACCACACAATATCTTTTTGTCACTGCAACTTTACCACTTGGCATTTACAACAAGTTAGTTGAAGATTTTCCTGATTGTCAAGTGGTCATGGCACCTGGAATGCACCGGATAAGCCCTGGCCTTGAAGAGGTACTTGTAGATTGCAGTGGAGATGATCGGAGTGAAAAATCTCCAGAGATGGCATTCACAAATAAGAAATCTGCTCTTCTACAGCTTGTGGAGGGAAGTCCAGTTCCCAAAACAATAGTCTTTTGTAATAAGATTGAGACATGCAGAAAAGTTGAGAATGTACTATCACGCTTTGACAGAAGTGGAACTCGTGTTCAAGTTCTACCATTTCATTCTGCTCTGGCTCAAGAATCACGGCTTGCAAACATGAAGGAGTTCACTAATTCTCATTCAGAGAAAGTAGCACAGTTTTTGGTCTGCACTGATAGAGCATCACGTGGAATCGACTTTCCTGGTGTGGATCATGTTATACTCTTCGACTTCCCTCGCGATCCAAGTGAGTACGTGCGGCGTGTAGGAAGAACTGCCAGGGGCGCTGGTGGAGTGGGCAAGGCATTCATCTTTGTCGTTGGCAAGCAAGTCTCTCTTGCGCGAAGAATACTGGACAGGAACCAAAAGGGTCACCCAGTGCATGATGTACCAGCTGCATACGAGCTTTTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

669

Amino Acids

74.53

Weight (kDa)

9.29

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	287 - 457	7.7e-33	DEAD/DEAH box helicase
Helicase_C	PF00271	510 - 625	4.4e-24	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	1426
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	2 cut(s)	1833, 1936
AciI	CCGC	4 cut(s)	281, 1128, 1326, 1852
AclWI	GGATC	3 cut(s)	934, 1812, 1829
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	1091
AcuI	CTGAAG	2 cut(s)	249, 657
AcvI	CACGTG	1 cut(s)	1781
AdeI	CACNNNGTG	1 cut(s)	1972
AfaI	GTAC	5 cut(s)	94, 1467, 1626, 1847, 1983
AfiI	CCNNNNNNNGG	4 cut(s)	277, 309, 667, 1462
AjnI	CCWGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
AloI	GAACNNNNNNTCC	4 cut(s)	1551, 1583, 1641, 1673
AluBI	AGCT	8 cut(s)	14, 365, 841, 914, 1150, 1549, 1988, 1999
AluI	AGCT	8 cut(s)	14, 365, 841, 914, 1150, 1549, 1988, 1999
Alw26I	GTCTC	4 cut(s)	375, 487, 1595, 1930
AlwI	GGATC	3 cut(s)	934, 1812, 1829
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	41, 867, 1453
ApeKI	GCWGC	5 cut(s)	167, 170, 838, 1301, 1988
ApoI	RAATTY	1 cut(s)	1091
ArsI	GACNNNNNNTTYG	2 cut(s)	1566, 1598
Asp700I	GAANNNNTTC	4 cut(s)	670, 984, 1401, 1718
AspLEI	GCGC	2 cut(s)	1880, 1936
AspS9I	GGNCC	1 cut(s)	705
AsuHPI	GGTGA	3 cut(s)	385, 417, 1958
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	705
BalI	TGGCCA	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	1426
BauI	CACGAG	1 cut(s)	1653
BbrPI	CACGTG	1 cut(s)	1781
BbvI	GCAGC	5 cut(s)	154, 157, 850, 1313, 1975
BccI	CCATC	8 cut(s)	61, 114, 659, 684, 750, 758, 862, 1507
BceAI	ACGGC	1 cut(s)	1715
BciT130I	CCWGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
BciVI	GTATCC	2 cut(s)	412, 738
BcoDI	GTCTC	4 cut(s)	375, 487, 1595, 1930
BfaI	CTAG	3 cut(s)	291, 407, 573
BfmI	CTRYAG	3 cut(s)	85, 351, 1544
BfoI	RGCGCY	1 cut(s)	1881
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	2 cut(s)	412, 738
BisI	GCNGC	7 cut(s)	168, 171, 282, 839, 1302, 1853, 1989
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	7 cut(s)	169, 172, 283, 840, 1303, 1854, 1990
Bme1390I	CCNGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
Bme18I	GGWCC	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	705
BmiI	GGNNCC	4 cut(s)	549, 706, 1428, 1955
BmrFI	CCNGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
BmrI	ACTGGG	1 cut(s)	1964
BmsI	GCATC	3 cut(s)	728, 794, 1784
BmuI	ACTGGG	1 cut(s)	1964
BpmI	CTGGAG	3 cut(s)	6, 867, 1491
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	1674
BsaAI	YACGTR	3 cut(s)	713, 1781, 1849
BsaBI	GATNNNNATC	1 cut(s)	1084
BsaJI	CCNNGG	6 cut(s)	153, 477, 870, 1192, 1450, 1872
BsaWI	WCCGGW	1 cut(s)	1440
BsaXI	ACNNNNNCTCC	2 cut(s)	1089, 1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 309, 667, 1462
Bse1I	ACTGG	5 cut(s)	23, 884, 1565, 1950, 1970
Bse3DI	GCAATG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	1084
BseBI	CCWGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
BseDI	CCNNGG	6 cut(s)	153, 477, 870, 1192, 1450, 1872
BseGI	GGATG	8 cut(s)	72, 193, 394, 695, 802, 809, 982, 1267
BseJI	GATNNNNATC	1 cut(s)	1084
BseLI	CCNNNNNNNGG	4 cut(s)	277, 309, 667, 1462
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	5 cut(s)	89, 600, 986, 1073, 1160
BseNI	ACTGG	5 cut(s)	23, 884, 1565, 1950, 1970
BseXI	GCAGC	5 cut(s)	154, 157, 850, 1313, 1975
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	2 cut(s)	434, 1747
Bsh1236I	CGCG	2 cut(s)	1833, 1936
BshFI	GGCC	3 cut(s)	43, 869, 1455
BshNI	GGYRCC	1 cut(s)	1426
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	1441
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	4 cut(s)	277, 309, 667, 1462
BsmAI	GTCTC	4 cut(s)	375, 487, 1595, 1930
BsmFI	GGGAC	1 cut(s)	542
BsmI	GAATGC	3 cut(s)	1440, 1517, 1898
BsnI	GGCC	3 cut(s)	43, 869, 1455
BsoBI	CYCGRG	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	3 cut(s)	153, 477, 870
Bsp68I	TCGCGA	1 cut(s)	1833
BspACI	CCGC	4 cut(s)	281, 1128, 1326, 1852
BspANI	GGCC	3 cut(s)	43, 869, 1455
BspCNI	CTCAG	5 cut(s)	88, 601, 987, 1072, 1159
BspFNI	CGCG	2 cut(s)	1833, 1936
BspLI	GGNNCC	4 cut(s)	549, 706, 1428, 1955
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	934, 1812, 1829
BspQI	GCTCTTC	1 cut(s)	1545
BspT107I	GGYRCC	1 cut(s)	1426
BsrDI	GCAATG	1 cut(s)	533
BsrI	ACTGG	5 cut(s)	23, 884, 1565, 1950, 1970
BssECI	CCNNGG	6 cut(s)	153, 477, 870, 1192, 1450, 1872
BssMI	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
BssSI	CACGAG	1 cut(s)	1653
BssT1I	CCWWGG	3 cut(s)	153, 477, 870
Bst2BI	CACGAG	1 cut(s)	1653
Bst2UI	CCWGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
Bst4CI	ACNGT	3 cut(s)	97, 272, 1752
Bst6I	CTCTTC	4 cut(s)	229, 1455, 1545, 1823
BstBAI	YACGTR	3 cut(s)	713, 1781, 1849
BstC8I	GCNNGC	2 cut(s)	1704, 1919
BstDEI	CTNAG	7 cut(s)	75, 609, 830, 995, 1059, 1146, 1244
BstDSI	CCRYGG	3 cut(s)	153, 477, 870
BstEII	GGTNACC	1 cut(s)	1964
BstENI	CCTNNNNNAGG	1 cut(s)	1460
BstF5I	GGATG	8 cut(s)	72, 193, 394, 695, 802, 809, 982, 1267
BstFNI	CGCG	2 cut(s)	1833, 1936
BstH2I	RGCGCY	1 cut(s)	1881
BstHHI	GCGC	2 cut(s)	1880, 1936
BstKTI	GATC	5 cut(s)	929, 1082, 1492, 1807, 1837
BstMAI	GTCTC	4 cut(s)	375, 487, 1595, 1930
BstMBI	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
BstMWI	GCNNNNNNNGC	5 cut(s)	640, 847, 950, 1052, 1877
BstNI	CCWGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
BstNSI	RCATGY	1 cut(s)	1608
BstPI	GGTNACC	1 cut(s)	1964
BstSCI	CCNGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
BstSFI	CTRYAG	3 cut(s)	85, 351, 1544
BstUI	CGCG	2 cut(s)	1833, 1936
BstV1I	GCAGC	5 cut(s)	154, 157, 850, 1313, 1975
BstX2I	RGATCY	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	926
BsuI	GTATCC	2 cut(s)	412, 738
BsuRI	GGCC	3 cut(s)	43, 869, 1455
BtgI	CCRYGG	3 cut(s)	153, 477, 870
BtsCI	GGATG	8 cut(s)	72, 193, 394, 695, 802, 809, 982, 1267
BtsI	GCAGTG	5 cut(s)	82, 814, 1304, 1356, 1486
BtsIMutI	CAGTG	7 cut(s)	82, 814, 1304, 1356, 1486, 1764, 1977
BtuMI	TCGCGA	1 cut(s)	1833
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	1704, 1919
CfoI	GCGC	2 cut(s)	1880, 1936
Cfr13I	GGNCC	1 cut(s)	705
CseI	GACGC	3 cut(s)	539, 623, 839
Csp6I	GTAC	5 cut(s)	93, 1466, 1625, 1846, 1982
CspCI	CAANNNNNGTGG	2 cut(s)	748, 783
CviQI	GTAC	5 cut(s)	93, 1466, 1625, 1846, 1982
DdeI	CTNAG	7 cut(s)	75, 609, 830, 995, 1059, 1146, 1244
DpnI	GATC	5 cut(s)	928, 1081, 1491, 1806, 1836
DpnII	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
DraIII	CACNNNGTG	1 cut(s)	1972
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	4 cut(s)	229, 1455, 1545, 1823
EarI	CTCTTC	4 cut(s)	229, 1455, 1545, 1823
Eco130I	CCWWGG	3 cut(s)	153, 477, 870
Eco47I	GGWCC	1 cut(s)	705
Eco57I	CTGAAG	2 cut(s)	249, 657
Eco72I	CACGTG	1 cut(s)	1781
Eco88I	CYCGRG	1 cut(s)	369
Eco91I	GGTNACC	1 cut(s)	1964
EcoNI	CCTNNNNNAGG	1 cut(s)	1460
EcoO65I	GGTNACC	1 cut(s)	1964
EcoRII	CCWGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
EcoT14I	CCWWGG	3 cut(s)	153, 477, 870
ErhI	CCWWGG	3 cut(s)	153, 477, 870
FalI	AAGNNNNNCTT	6 cut(s)	1208, 1240, 1452, 1484, 1914, 1946
FaqI	GGGAC	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	7 cut(s)	168, 171, 282, 839, 1302, 1853, 1989
FokI	GGATG	8 cut(s)	79, 200, 401, 702, 809, 816, 989, 1274
Fsp4HI	GCNGC	7 cut(s)	168, 171, 282, 839, 1302, 1853, 1989
FspBI	CTAG	3 cut(s)	291, 407, 573
GlaI	GCGC	2 cut(s)	1879, 1935
GluI	GCNGC	7 cut(s)	168, 171, 282, 839, 1302, 1853, 1989
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	3 cut(s)	6, 867, 1491
HaeII	RGCGCY	1 cut(s)	1881
HaeIII	GGCC	3 cut(s)	43, 869, 1455
HapII	CCGG	1 cut(s)	1441
HgaI	GACGC	3 cut(s)	539, 623, 839
HhaI	GCGC	2 cut(s)	1880, 1936
Hin6I	GCGC	2 cut(s)	1878, 1934
HinP1I	GCGC	2 cut(s)	1878, 1934
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	6 cut(s)	221, 239, 613, 1015, 1694, 1785
HpaII	CCGG	1 cut(s)	1441
HphI	GGTGA	3 cut(s)	385, 417, 1958
Hpy166II	GTNNAC	6 cut(s)	31, 93, 100, 275, 658, 1722
Hpy188I	TCNGA	8 cut(s)	111, 147, 229, 639, 724, 1041, 1494, 1738
Hpy188III	TCNNGA	7 cut(s)	573, 681, 731, 1406, 1508, 1691, 1832
Hpy8I	GTNNAC	6 cut(s)	31, 93, 100, 275, 658, 1722
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	6 cut(s)	440, 516, 538, 741, 1160, 1708
HpyCH4III	ACNGT	3 cut(s)	97, 272, 1752
HpyCH4IV	ACGT	3 cut(s)	712, 1780, 1848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	640, 847, 950, 1052, 1877
HpyF3I	CTNAG	7 cut(s)	75, 609, 830, 995, 1059, 1146, 1244
HpySE526I	ACGT	3 cut(s)	712, 1780, 1848
HspAI	GCGC	2 cut(s)	1878, 1934
Kzo9I	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
LguI	GCTCTTC	1 cut(s)	1545
LmnI	GCTCC	5 cut(s)	19, 25, 206, 886, 958
Lsp1109I	GCAGC	5 cut(s)	154, 157, 850, 1313, 1975
LweI	GCATC	3 cut(s)	728, 794, 1784
MaeI	CTAG	3 cut(s)	291, 407, 573
MaeII	ACGT	3 cut(s)	712, 1780, 1848
MaeIII	GTNAC	6 cut(s)	236, 577, 1120, 1333, 1354, 1964
MalI	GATC	5 cut(s)	928, 1081, 1491, 1806, 1836
MboI	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
MfeI	CAATTG	2 cut(s)	441, 1232
MflI	RGATCY	1 cut(s)	926
MlsI	TGGCCA	1 cut(s)	43
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	4 cut(s)	215, 233, 622, 1024
MmeI	TCCRAC	2 cut(s)	534, 1064
Mox20I	TGGCCA	1 cut(s)	43
MroXI	GAANNNNTTC	4 cut(s)	670, 984, 1401, 1718
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	5 cut(s)	971, 1215, 1281, 1316, 2008
Msp20I	TGGCCA	1 cut(s)	43
MspA1I	CMGCKG	2 cut(s)	1150, 1988
MspI	CCGG	1 cut(s)	1441
MspR9I	CCNGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
MunI	CAATTG	2 cut(s)	441, 1232
Mva1269I	GAATGC	3 cut(s)	1440, 1517, 1898
MvaI	CCWGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
MvnI	CGCG	2 cut(s)	1833, 1936
MwoI	GCNNNNNNNGC	5 cut(s)	640, 847, 950, 1052, 1877
NcoI	CCATGG	3 cut(s)	153, 477, 870
NdeII	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
NlaIV	GGNNCC	4 cut(s)	549, 706, 1428, 1955
NmuCI	GTSAC	3 cut(s)	236, 1354, 1964
NruI	TCGCGA	1 cut(s)	1833
NspI	RCATGY	1 cut(s)	1608
PaqCI	CACCTGC	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	1545
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	3 cut(s)	1440, 1517, 1898
PdmI	GAANNNNTTC	4 cut(s)	670, 984, 1401, 1718
PfeI	GAWTC	2 cut(s)	1694, 1785
PkrI	GCNGC	7 cut(s)	169, 172, 283, 840, 1303, 1854, 1990
PleI	GAGTC	4 cut(s)	215, 233, 621, 1023
PmaCI	CACGTG	1 cut(s)	1781
PmlI	CACGTG	1 cut(s)	1781
PpsI	GAGTC	4 cut(s)	215, 233, 621, 1023
Ppu21I	YACGTR	3 cut(s)	713, 1781, 1849
Psp6I	CCWGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
PspCI	CACGTG	1 cut(s)	1781
PspEI	GGTNACC	1 cut(s)	1964
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
PspN4I	GGNNCC	4 cut(s)	549, 706, 1428, 1955
PspPI	GGNCC	1 cut(s)	705
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	926
PvuII	CAGCTG	2 cut(s)	1150, 1988
RruI	TCGCGA	1 cut(s)	1833
RsaI	GTAC	5 cut(s)	94, 1467, 1626, 1847, 1983
RsaNI	GTAC	5 cut(s)	93, 1466, 1625, 1846, 1982
SapI	GCTCTTC	1 cut(s)	1545
SaqAI	TTAA	5 cut(s)	971, 1215, 1281, 1316, 2008
SatI	GCNGC	7 cut(s)	168, 171, 282, 839, 1302, 1853, 1989
Sau3AI	GATC	5 cut(s)	926, 1079, 1489, 1804, 1834
Sau96I	GGNCC	1 cut(s)	705
SchI	GAGTC	4 cut(s)	215, 233, 622, 1024
ScrFI	CCNGG	5 cut(s)	1194, 1431, 1452, 1797, 1873
SfaNI	GCATC	3 cut(s)	728, 794, 1784
SfcI	CTRYAG	3 cut(s)	85, 351, 1544
SinI	GGWCC	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	1689
SmoI	CTYRAG	1 cut(s)	1689
SsiI	CCGC	4 cut(s)	281, 1128, 1326, 1852
SspMI	CTAG	3 cut(s)	291, 407, 573
StyD4I	CCNGG	5 cut(s)	1192, 1429, 1450, 1795, 1871
StyI	CCWWGG	3 cut(s)	153, 477, 870
TaaI	ACNGT	3 cut(s)	97, 272, 1752
TaiI	ACGT	3 cut(s)	715, 1783, 1851
TaqI	TCGA	7 cut(s)	745, 781, 1021, 1135, 1198, 1788, 1821
TaqII	GACCGA	1 cut(s)	675
TatI	WGTACW	2 cut(s)	92, 1624
TauI	GCSGC	2 cut(s)	284, 1855
TfiI	GAWTC	2 cut(s)	1694, 1785
Tru1I	TTAA	5 cut(s)	971, 1215, 1281, 1316, 2008
Tru9I	TTAA	5 cut(s)	971, 1215, 1281, 1316, 2008
TscAI	CASTG	7 cut(s)	89, 814, 1311, 1363, 1486, 1771, 1977
TseFI	GTSAC	3 cut(s)	236, 1354, 1964
TseI	GCWGC	5 cut(s)	167, 170, 838, 1301, 1988
Tsp45I	GTSAC	3 cut(s)	236, 1354, 1964
TspDTI	ATGAA	7 cut(s)	184, 405, 417, 993, 1664, 1727, 1891
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	7 cut(s)	89, 814, 1311, 1363, 1486, 1771, 1977
VpaK11BI	GGWCC	1 cut(s)	705
XagI	CCTNNNNNAGG	1 cut(s)	1460
XapI	RAATTY	1 cut(s)	1091
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	1 cut(s)	1608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	926
XmiI	GTMKAC	1 cut(s)	657
XmnI	GAANNNNTTC	4 cut(s)	670, 984, 1401, 1718
XspI	CTAG	3 cut(s)	291, 407, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.