Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Reverse (-)

29996899 .. 29999263

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGAAGAAGAAGAAGAAGAAAGCAAATGCCAGGAGTCATGTAGGGAGACTTTCGAATCCTTCCAACTCACATGAGTTTAGGGACGCATTGCGTAAGAAGGAACCAACAGATTACAAGGACAATCCTAGAGTAACTACGAAAGATTTTTTTGAGCCACTCCCTGAGAGTTGGCATAAACCATATATGCGTCAGAAGCCTAACACCATCGTAGACAGACAAAAGGTTTCAGTTTCAAGAAAAGGATGGGGTAGTGGAGGGTCCGTACGCGATTCATCGGAGTATCCAGACCTAGACCAACGAAGGAGAGTGTCCAATGATGGTTTCAGTCGAAAATCCTTTAGGGATGCGGGATGCAGTGAGTATATGATTGAATGTCTAAGGAAGCAGCTTTTCCAGCGTCCATCACATATTCAGGCCATGGCGTTTGCTCCAGTTGTTGCTGGAAAAACCTCTATTATAGCTGACCAAAGTGGATCTGGCAAAACATTGGCTTATCTTGCTCCTGTCATTCAGCGTTTAAGGGATGAAGAACTTCAAGGACTGAGCAAGTCCTCATCACAGAGTCCTCAGAATTGGCTTCTCAGGTATTTTTTTTTGGAAGTTCAGCTCGCCCTATCTTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

210

Amino Acids

23.94

Weight (kDa)

10.03

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	137 - 178	1.2e-06	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	484
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	237, 374, 539
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	391, 464, 610
AluI	AGCT	3 cut(s)	391, 464, 610
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	261
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	4 cut(s)	215, 240, 314, 412
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	129, 293
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	105, 262
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	337, 344
BpmI	CTGGAG	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	4 cut(s)	251, 352, 359, 532
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	4 cut(s)	156, 536, 584, 598
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	419
BsiWI	CGTACG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	476
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	4 cut(s)	157, 537, 583, 597
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	105, 262
BspPI	GGATC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	5 cut(s)	165, 380, 545, 570, 584
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	251, 352, 359, 532
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 397, 500
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	4 cut(s)	251, 352, 359, 532
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	3 cut(s)	95, 179, 389
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	3 cut(s)	41, 74, 421
CviJI	RGCY	8 cut(s)	157, 199, 391, 419, 464, 494, 580, 610
CviKI_1	RGCY	8 cut(s)	157, 199, 391, 419, 464, 494, 580, 610
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	5 cut(s)	165, 380, 545, 570, 584
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	44, 77, 424
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	40, 73, 420
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	4 cut(s)	258, 359, 366, 539
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	2 cut(s)	129, 293
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	419
HgaI	GACGC	3 cut(s)	95, 179, 389
Hin1II	CATG	3 cut(s)	44, 77, 424
HinfI	GANTC	4 cut(s)	37, 58, 272, 565
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	195, 280, 573
Hpy188III	TCNNGA	2 cut(s)	237, 287
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	72, 94, 297
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 397, 500
HpyF3I	CTNAG	5 cut(s)	165, 380, 545, 570, 584
Hsp92II	CATG	3 cut(s)	44, 77, 424
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	436, 508
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	337, 344
MaeI	CTAG	2 cut(s)	129, 293
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	6 cut(s)	19, 22, 25, 28, 31, 542
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	1 cut(s)	574
MlyI	GAGTC	2 cut(s)	46, 574
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	251, 463, 565, 579
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	196, 397, 500
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	44, 77, 424
NlaIV	GGNNCC	2 cut(s)	105, 262
NspV	TTCGAA	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	58, 272
Pfl23II	CGTACG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	2 cut(s)	45, 573
PpsI	GAGTC	2 cut(s)	45, 573
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspLI	CGTACG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	105, 262
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	46, 574
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	7 cut(s)	228, 294, 393, 455, 466, 590, 612
SfaNI	GCATC	2 cut(s)	337, 344
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	2 cut(s)	129, 293
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	420
TaqI	TCGA	2 cut(s)	56, 331
TasI	AATT	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	58, 272
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	264, 543
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	129, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.