Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007108.1

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Forward (+)

10311 .. 11408

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007108.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgaaatctgtagtggagaaagcttttcgggtgaagcgagacatggatgaaagtgaaaatgaactagatgtgcaggatacatcaccatttatctctacaattgaaggtatggggaagaagaagaagaagaagaaagcaaatgccatgagtcgtggagggagactttcgaatccttccaactcacatgagtttagggacgcattgcgtaagaaggaaccaacagattacaaggacaattctagagtaactacgaaagatttttttgagccactccctgagagtcggcataaaccatatatgcgtcagaagcctaacaccatcgtagacagacaaaaggtttcagtttcaagaaaaggatggggtagtggagggtccgtaagcgattcatcggagtatccagacctagaccaacgaaggatcggagagtgtccaatgatggtggctttttcagtcgaaaatcctttagggatgcgggatgcagccatggcgtttgctccagttgttgctggaaaaacctctattatagctgaccaaagtggatctggcaaaacattggcttatcttgctcctgtcattcagcgtttaagggatgaagaacttcaaggactgagcaagtcctcatcacagagtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

211

Amino Acids

23.48

Weight (kDa)

9.52

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	2 cut(s)	425, 547
AgsI	TTSAA	3 cut(s)	104, 348, 602
AluBI	AGCT	2 cut(s)	23, 527
AluI	AGCT	2 cut(s)	23, 527
Alw26I	GTCTC	2 cut(s)	33, 154
AlwI	GGATC	2 cut(s)	425, 547
ApeKI	GCWGC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	43, 75
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	3 cut(s)	326, 351, 430
BciVI	GTATCC	2 cut(s)	70, 405
BcoDI	GTCTC	2 cut(s)	33, 154
BfaI	CTAG	3 cut(s)	65, 240, 404
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	2 cut(s)	70, 405
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	216, 373
BmsI	GCATC	2 cut(s)	459, 466
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	5 cut(s)	52, 362, 474, 481, 595
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	267, 599
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	33, 154
BsmFI	GGGAC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	417, 539
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	1 cut(s)	472
BspCNI	CTCAG	2 cut(s)	268, 600
BspLI	GGNNCC	2 cut(s)	216, 373
BspPI	GGATC	2 cut(s)	425, 547
BspT104I	TTCGAA	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	417, 539
BssT1I	CCWWGG	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	276, 608
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	5 cut(s)	52, 362, 474, 481, 595
BstKTI	GATC	2 cut(s)	420, 542
BstMAI	GTCTC	2 cut(s)	33, 154
BstMBI	GATC	2 cut(s)	417, 539
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 485, 563
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuI	GTATCC	2 cut(s)	70, 405
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	5 cut(s)	52, 362, 474, 481, 595
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	2 cut(s)	206, 290
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	4 cut(s)	43, 145, 185, 484
CviJI	RGCY	7 cut(s)	23, 268, 310, 443, 482, 527, 557
CviKI_1	RGCY	7 cut(s)	23, 268, 310, 443, 482, 527, 557
DdeI	CTNAG	2 cut(s)	276, 608
DpnI	GATC	2 cut(s)	419, 541
DpnII	GATC	2 cut(s)	417, 539
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	46, 148, 188, 487
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	4 cut(s)	42, 144, 184, 483
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	5 cut(s)	59, 369, 481, 488, 602
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	3 cut(s)	65, 240, 404
GluI	GCNGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	480
HgaI	GACGC	2 cut(s)	206, 290
Hin1II	CATG	4 cut(s)	46, 148, 188, 487
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	5 cut(s)	148, 169, 280, 383, 628
HphI	GGTGA	2 cut(s)	43, 75
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	306, 391, 422
Hpy188III	TCNNGA	3 cut(s)	240, 348, 398
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	98, 183, 205, 408
HpyCH4V	TGCA	2 cut(s)	73, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 485, 563
HpyF3I	CTNAG	2 cut(s)	276, 608
Hsp92II	CATG	4 cut(s)	46, 148, 188, 487
Kzo9I	GATC	2 cut(s)	417, 539
LmnI	GCTCC	2 cut(s)	499, 571
LpnPI	CCDG	7 cut(s)	59, 288, 411, 492, 510, 528, 582
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	459, 466
MaeI	CTAG	3 cut(s)	65, 240, 404
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	419, 541
MboI	GATC	2 cut(s)	417, 539
MboII	GAAGA	7 cut(s)	127, 130, 133, 136, 139, 142, 605
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	539
MluCI	AATT	2 cut(s)	99, 235
MlyI	GAGTC	2 cut(s)	157, 289
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	149, 362, 526, 628
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	1 cut(s)	584
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	307, 485, 563
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	417, 539
NlaIII	CATG	4 cut(s)	46, 148, 188, 487
NlaIV	GGNNCC	2 cut(s)	216, 373
NspV	TTCGAA	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	169, 383
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	2 cut(s)	156, 288
PpsI	GAGTC	2 cut(s)	156, 288
PspN4I	GGNNCC	2 cut(s)	216, 373
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	2 cut(s)	417, 539
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	157, 289
SetI	ASST	6 cut(s)	25, 109, 339, 405, 518, 529
SfaNI	GCATC	2 cut(s)	459, 466
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	99, 235
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	3 cut(s)	65, 240, 404
StyI	CCWWGG	1 cut(s)	483
TaqI	TCGA	2 cut(s)	167, 453
TasI	AATT	2 cut(s)	99, 235
TfiI	GAWTC	2 cut(s)	169, 383
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	17, 63, 75, 375, 606
TspGWI	ACGGA	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	65, 240, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.