Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Forward (+)

38409969 .. 38413442

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAAATCTGTAGTGGAGAAAGCATCTCGGGTGAAGCGAGAAATGGATGAAAGTGAAAATGAACTAGATGTGCAGGATACATCACCATTTATCTCTACAATTGAAGGTATGGGGAAGAAGAAGAAGAAGAAAGCAAATGCCATGAGTCGTGGAGGGAGACTTTCGAATCCTTCCAACTCACATGAGTTTAGGGACGCATTGCGTAAGAAGGAACCAACAGATTACAAGGACAATTCTAGAGTAACTACGAAAGATTTTTTTGAGCCACTCCCTGAGAGTTGGCATAAACCATATATGCGTCAGAAGCCTAACACCATCGTAGACAGACAAAAGGTTTCAGTTTCAAGAGAAGGATGGGGTAGTGGAGGGTCCGTACGCGATTCATCGGAGTATCCAGACCTAGACCAACGAAGGAGAGTGTCCAATGATGGTGGCTTTTTCAGTCGAAAATCCTTTAGGGATGCGGGATGCAGTGAGTATATGATTGAATGTCTAAGGAAGCAGCTTTTCCAGCGTCCATCACATATTCAGGCCATGGCGTTGGCTCCAGTTGTTGCTGGAAAAACCTCTAGTATAGCTGACCAAAGTGGATCTGGCAAAACATTGGCTTATCTTGCTCCTGTCATTCAGCAATTGGCTTCTCAGGTTTTGGGTAATTGCCGATCAATATCAAAATTTGGAGTTCCTGTCAGGTCTATGGTTGTAACAGGCGGTCATCGACAGAAAACTCAGCTGGAAAGTTTGCAAGAAGGTGTTGATGTTCTAATTGCAACCCCAGGTCGATTTATATATCTAATTAAGGAGGGCTTCTTGCAATTGTCAAATTTAAGATGTGCTGTGCTGGATGAGGTAGATATAGTCTTTAATGATGAGGATTTTGAAGCAGCACTGCAAAGTTTAATCAATTCCACACCTGTAACCACACAATATCTTTTTGTCACTGCAACTTTACCACTTGGCATTTACAACAAGTTAGTTGAAGATTTTCCTGATTGTCAAGTGGGCATGGCACCTGGAATGCACCGGATAAGCCCTGGCCTTGAAGAGGTTCTTGTAGATTGCCGTGGAAATGATCGGAGTGAAAAATCTCCAGAGATGACATTCACAAATAAGAAATCTGCTCTTCTACAGCTTGTGGAGGGAAGTCCAGTGCCCAAAACAATAGTCTTTTGTAACAAGGTAAGGTGGGAGGATTTACTTTTGTGGTTTGCACCGGTTGTCCCTGTGTGCTATTTACAAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

8.64

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	175 - 318	2e-20	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1009
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	464, 711
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	674, 823
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AgeI	ACCGGT	1 cut(s)	1213
AgsI	TTSAA	6 cut(s)	104, 345, 488, 881, 980, 1043
AjnI	CCWGG	3 cut(s)	775, 1012, 1033
AluBI	AGCT	4 cut(s)	505, 578, 733, 1132
AluI	AGCT	4 cut(s)	505, 578, 733, 1132
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	531, 1036
ApeKI	GCWGC	2 cut(s)	502, 884
ApoI	RAATTY	2 cut(s)	674, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	1149, 1181
AsiGI	ACCGGT	1 cut(s)	1213
Asp700I	GAANNNNTTC	2 cut(s)	984, 1047
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	43, 75
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	1155
BanI	GGYRCC	1 cut(s)	1009
BbvI	GCAGC	2 cut(s)	514, 896
BccI	CCATC	4 cut(s)	323, 348, 422, 526
BceAI	ACGGC	1 cut(s)	1047
BciT130I	CCWGG	3 cut(s)	777, 1014, 1035
BciVI	GTATCC	2 cut(s)	70, 402
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	4 cut(s)	65, 237, 401, 570
BfmI	CTRYAG	2 cut(s)	9, 1127
BfuI	GTATCC	2 cut(s)	70, 402
BisI	GCNGC	2 cut(s)	503, 885
BlsI	GCNGC	2 cut(s)	504, 886
Bme1390I	CCNGG	3 cut(s)	777, 1014, 1035
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	4 cut(s)	213, 370, 546, 1011
BmrFI	CCNGG	3 cut(s)	777, 1014, 1035
BmsI	GCATC	3 cut(s)	32, 451, 458
BpmI	CTGGAG	2 cut(s)	531, 1074
Bpu14I	TTCGAA	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	667
BsaJI	CCNNGG	4 cut(s)	534, 775, 1033, 1063
BsaWI	WCCGGW	2 cut(s)	1023, 1213
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse118I	RCCGGY	1 cut(s)	1213
Bse1I	ACTGG	2 cut(s)	548, 1148
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	667
BseBI	CCWGG	3 cut(s)	777, 1014, 1035
BseDI	CCNNGG	4 cut(s)	534, 775, 1033, 1063
BseGI	GGATG	5 cut(s)	52, 359, 466, 473, 850
BseJI	GATNNNNATC	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	3 cut(s)	264, 656, 743
BseNI	ACTGG	2 cut(s)	548, 1148
BseSI	GKGCMC	1 cut(s)	1155
BseXI	GCAGC	2 cut(s)	514, 896
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	533, 1038
BshNI	GGYRCC	1 cut(s)	1009
BshTI	ACCGGT	1 cut(s)	1213
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	1024, 1214
BsiWI	CGTACG	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	206, 1205
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	206, 1205
BsmI	GAATGC	2 cut(s)	1023, 1241
BsnI	GGCC	2 cut(s)	533, 1038
BsoBI	CYCGRG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	1155
Bsp143I	GATC	3 cut(s)	590, 662, 1072
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	2 cut(s)	464, 711
BspANI	GGCC	2 cut(s)	533, 1038
BspCNI	CTCAG	3 cut(s)	265, 655, 742
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	213, 370, 546, 1011
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	1128
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	1213
BsrI	ACTGG	2 cut(s)	548, 1148
BssAI	RCCGGY	1 cut(s)	1213
BssECI	CCNNGG	4 cut(s)	534, 775, 1033, 1063
BssMI	GATC	3 cut(s)	590, 662, 1072
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	3 cut(s)	777, 1014, 1035
Bst6I	CTCTTC	2 cut(s)	1038, 1128
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	4 cut(s)	273, 494, 642, 729
BstDSI	CCRYGG	2 cut(s)	534, 1063
BstENI	CCTNNNNNAGG	1 cut(s)	1043
BstF5I	GGATG	5 cut(s)	52, 359, 466, 473, 850
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	593, 665, 1075
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	590, 662, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 511, 614
BstNI	CCWGG	3 cut(s)	777, 1014, 1035
BstSCI	CCNGG	3 cut(s)	775, 1012, 1033
BstSFI	CTRYAG	2 cut(s)	9, 1127
BstSLI	GKGCMC	1 cut(s)	1155
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	514, 896
BstX2I	RGATCY	1 cut(s)	590
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	70, 402
BsuRI	GGCC	2 cut(s)	533, 1038
BtgI	CCRYGG	2 cut(s)	534, 1063
BtsCI	GGATG	5 cut(s)	52, 359, 466, 473, 850
BtsI	GCAGTG	3 cut(s)	478, 887, 939
BtsIMutI	CAGTG	4 cut(s)	478, 887, 939, 1155
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	3 cut(s)	203, 287, 503
Csp6I	GTAC	1 cut(s)	374
CspAI	ACCGGT	1 cut(s)	1213
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	4 cut(s)	142, 182, 535, 1006
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	273, 494, 642, 729
DpnI	GATC	3 cut(s)	592, 664, 1074
DpnII	GATC	3 cut(s)	590, 662, 1072
Eam1104I	CTCTTC	2 cut(s)	1038, 1128
EarI	CTCTTC	2 cut(s)	1038, 1128
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	1043
EcoRII	CCWGG	3 cut(s)	775, 1012, 1033
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	145, 185, 538, 1009
FalI	AAGNNNNNCTT	4 cut(s)	791, 823, 1035, 1067
FaqI	GGGAC	2 cut(s)	206, 1205
FatI	CATG	4 cut(s)	141, 181, 534, 1005
FauI	CCCGC	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	503, 885
FokI	GGATG	5 cut(s)	59, 366, 473, 480, 857
Fsp4HI	GCNGC	2 cut(s)	503, 885
FspBI	CTAG	4 cut(s)	65, 237, 401, 570
GluI	GCNGC	2 cut(s)	503, 885
GsuI	CTGGAG	2 cut(s)	531, 1074
HaeIII	GGCC	2 cut(s)	533, 1038
HapII	CCGG	2 cut(s)	1024, 1214
HgaI	GACGC	3 cut(s)	203, 287, 503
Hin1II	CATG	4 cut(s)	145, 185, 538, 1009
HinfI	GANTC	3 cut(s)	145, 166, 380
HpaII	CCGG	2 cut(s)	1024, 1214
HphI	GGTGA	2 cut(s)	43, 75
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	303, 388, 1077, 1247
Hpy188III	TCNNGA	5 cut(s)	237, 345, 395, 989, 1091
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	6 cut(s)	98, 180, 202, 344, 405, 743
HpyCH4V	TGCA	9 cut(s)	73, 471, 745, 770, 814, 892, 944, 1021, 1211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 511, 614
HpyF3I	CTNAG	4 cut(s)	273, 494, 642, 729
Hsp92II	CATG	4 cut(s)	145, 185, 538, 1009
Kzo9I	GATC	3 cut(s)	590, 662, 1072
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	2 cut(s)	550, 622
Lsp1109I	GCAGC	2 cut(s)	514, 896
LweI	GCATC	3 cut(s)	32, 451, 458
MaeI	CTAG	4 cut(s)	65, 237, 401, 570
MaeIII	GTNAC	5 cut(s)	241, 703, 916, 937, 1172
MalI	GATC	3 cut(s)	592, 664, 1074
MboI	GATC	3 cut(s)	590, 662, 1072
MboII	GAAGA	8 cut(s)	127, 130, 133, 136, 139, 992, 1055, 1115
MfeI	CAATTG	3 cut(s)	99, 632, 815
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	1155
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	9 cut(s)	146, 359, 577, 796, 841, 865, 1039, 1132, 1183
MroXI	GAANNNNTTC	2 cut(s)	984, 1047
MseI	TTAA	4 cut(s)	798, 827, 864, 899
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	2 cut(s)	1024, 1214
MspR9I	CCNGG	3 cut(s)	777, 1014, 1035
MunI	CAATTG	3 cut(s)	99, 632, 815
Mva1269I	GAATGC	2 cut(s)	1023, 1241
MvaI	CCWGG	3 cut(s)	777, 1014, 1035
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	304, 511, 614
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	590, 662, 1072
NlaIII	CATG	4 cut(s)	145, 185, 538, 1009
NlaIV	GGNNCC	4 cut(s)	213, 370, 546, 1011
NmuCI	GTSAC	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	2 cut(s)	1023, 1241
PdmI	GAANNNNTTC	2 cut(s)	984, 1047
PfeI	GAWTC	2 cut(s)	166, 380
Pfl23II	CGTACG	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	1213
PkrI	GCNGC	2 cut(s)	504, 886
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	775, 1012, 1033
PspGI	CCWGG	3 cut(s)	775, 1012, 1033
PspLI	CGTACG	1 cut(s)	373
PspN4I	GGNNCC	4 cut(s)	213, 370, 546, 1011
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	4 cut(s)	798, 827, 864, 899
SatI	GCNGC	2 cut(s)	503, 885
Sau3AI	GATC	3 cut(s)	590, 662, 1072
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	777, 1014, 1035
SduI	GDGCHC	1 cut(s)	1155
SfaNI	GCATC	3 cut(s)	32, 451, 458
SfcI	CTRYAG	2 cut(s)	9, 1127
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	369
SsiI	CCGC	2 cut(s)	464, 711
SspMI	CTAG	4 cut(s)	65, 237, 401, 570
StyD4I	CCNGG	3 cut(s)	775, 1012, 1033
StyI	CCWWGG	1 cut(s)	534
TaqI	TCGA	4 cut(s)	164, 445, 718, 781
TfiI	GAWTC	2 cut(s)	166, 380
Tru1I	TTAA	4 cut(s)	798, 827, 864, 899
Tru9I	TTAA	4 cut(s)	798, 827, 864, 899
TscAI	CASTG	4 cut(s)	478, 894, 946, 1155
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	2 cut(s)	502, 884
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	4 cut(s)	17, 63, 75, 372
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	4 cut(s)	478, 894, 946, 1155
VpaK11BI	GGWCC	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	1043
XapI	RAATTY	2 cut(s)	674, 823
XbaI	TCTAGA	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	2 cut(s)	984, 1047
XspI	CTAG	4 cut(s)	65, 237, 401, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.