Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Forward (+)

34631016 .. 34634190

Gene Structure 3175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCTTAAATTTTGTTTTGGGTAATTGCCGATCAATATCAAAATTTGGAGTTCCTGTCAGGTCTATGGTTGTAACAGGCGGTCATCGACAGAAAACTCAGCTGGAAAGTTTGCAAGAAGGTGTTGATGTTCTAATTGCAACCCCAGGTCGATTTATGTATCTAATTAAGGAGGGCTTCTTGCAATTGTCAAATTTAAGATGTGCTGTGCTGGATGAGGTAGATATAGTCTTTAATGATGAGGATTTTGAAGCAGCACTGCAAAGTTTAATCAATTCCGCACCTGTAACCACACAATATCTTTTTGTCACTACAACTTTACCACTTGGCATTTACAACAAGTTAGTTGAAGATTTTCCTGCGTGTCAAGTGGGCATGGCACCTGGAATGCACCGGATAAGCCCTGGCCTTGAAGAGGTTCTTGTAGATTGCCGTGGAGATGATCGGAGTGAAAAATCTCCAGAGATGACATTCACAAATAAGAAATCTGCTCTTCTACAGCTTGTGGAGGGAAGTCCAGTTCCCAAAACAATAGTCTTTTGTAACAAGACATGCAGAAAAGTTGAGAATGTACTATCACTCTTTGACAGAAGTGGAACTTGTGTTCAAATTCTACCATTTCATTCTGCTCTGGCTCAAGAATCACGGCTTGCAAACATGAAGGAGTTCACCAATTCTCATTCAGAGAAAGTAGCACAGTTTTTGGTCTGCACTGATAGAGCATCACGTGGAATCGACTTTCCTGGTGGGGATCATGTTATACTCTTCGACTTCCCTCGTGATCCAAGTGAGTACGTGCGGCGTGTAGGAAGAACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

273

Amino Acids

30.32

Weight (kDa)

6.0

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	4 - 108	1e-13	DEAD/DEAH box helicase
Helicase_C	PF00271	161 - 273	3.4e-21	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	3 cut(s)	81, 279, 799
AclWI	GGATC	2 cut(s)	759, 776
AcsI	RAATTY	4 cut(s)	10, 44, 193, 609
AcvI	CACGTG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	573, 794
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	251, 350, 413, 608
AjnI	CCWGG	4 cut(s)	145, 382, 403, 742
AloI	GAACNNNNNNTCC	4 cut(s)	504, 536, 588, 620
AluBI	AGCT	2 cut(s)	103, 502
AluI	AGCT	2 cut(s)	103, 502
AlwI	GGATC	2 cut(s)	759, 776
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	4 cut(s)	10, 44, 193, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
Asp700I	GAANNNNTTC	3 cut(s)	354, 417, 665
AsuHPI	GGTGA	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	777
BbrPI	CACGTG	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	417, 662
BciT130I	CCWGG	4 cut(s)	147, 384, 405, 744
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	2 cut(s)	255, 800
BlsI	GCNGC	2 cut(s)	256, 801
Bme1390I	CCNGG	4 cut(s)	147, 384, 405, 744
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	4 cut(s)	147, 384, 405, 744
BmsI	GCATC	1 cut(s)	731
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	621
BsaAI	YACGTR	2 cut(s)	728, 796
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	145, 403, 433
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	37
BseBI	CCWGG	4 cut(s)	147, 384, 405, 744
BseDI	CCNNGG	3 cut(s)	145, 403, 433
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	694
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	32, 442, 751, 781
BspACI	CCGC	3 cut(s)	81, 279, 799
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	759, 776
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	145, 403, 433
BssMI	GATC	4 cut(s)	32, 442, 751, 781
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	4 cut(s)	147, 384, 405, 744
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	3 cut(s)	408, 498, 770
BstBAI	YACGTR	2 cut(s)	728, 796
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	4 cut(s)	35, 445, 754, 784
BstMBI	GATC	4 cut(s)	32, 442, 751, 781
BstNI	CCWGG	4 cut(s)	147, 384, 405, 744
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	4 cut(s)	145, 382, 403, 742
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	257, 711
Cac8I	GCNNGC	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	572, 793
CviAII	CATG	4 cut(s)	376, 552, 658, 755
CviJI	RGCY	7 cut(s)	103, 177, 402, 408, 502, 635, 649
CviKI_1	RGCY	7 cut(s)	103, 177, 402, 408, 502, 635, 649
CviQI	GTAC	2 cut(s)	572, 793
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	4 cut(s)	34, 444, 753, 783
DpnII	GATC	4 cut(s)	32, 442, 751, 781
Eam1104I	CTCTTC	3 cut(s)	408, 498, 770
EarI	CTCTTC	3 cut(s)	408, 498, 770
Eco72I	CACGTG	1 cut(s)	728
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	4 cut(s)	145, 382, 403, 742
FaeI	CATG	4 cut(s)	379, 555, 661, 758
FaiI	YATR	8 cut(s)	68, 158, 227, 377, 553, 659, 756, 761
FalI	AAGNNNNNCTT	6 cut(s)	161, 193, 405, 437, 583, 615
FatI	CATG	4 cut(s)	375, 551, 657, 754
Fnu4HI	GCNGC	2 cut(s)	255, 800
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	255, 800
GluI	GCNGC	2 cut(s)	255, 800
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	4 cut(s)	379, 555, 661, 758
HinfI	GANTC	2 cut(s)	641, 732
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	2 cut(s)	447, 685
Hpy188III	TCNNGA	3 cut(s)	461, 638, 779
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	2 cut(s)	113, 655
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	2 cut(s)	727, 795
HpyCH4V	TGCA	8 cut(s)	115, 140, 184, 262, 391, 555, 653, 711
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	727, 795
Hsp92II	CATG	4 cut(s)	379, 555, 661, 758
Kzo9I	GATC	4 cut(s)	32, 442, 751, 781
LguI	GCTCTTC	1 cut(s)	498
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	731
MaeII	ACGT	2 cut(s)	727, 795
MaeIII	GTNAC	4 cut(s)	73, 286, 307, 542
MalI	GATC	4 cut(s)	34, 444, 753, 783
MboI	GATC	4 cut(s)	32, 442, 751, 781
MboII	GAAGA	5 cut(s)	362, 425, 485, 757, 822
MfeI	CAATTG	1 cut(s)	185
MnlI	CCTC	6 cut(s)	166, 211, 235, 409, 502, 786
MroXI	GAANNNNTTC	3 cut(s)	354, 417, 665
MseI	TTAA	5 cut(s)	8, 168, 197, 234, 269
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	4 cut(s)	147, 384, 405, 744
MunI	CAATTG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	4 cut(s)	147, 384, 405, 744
NdeII	GATC	4 cut(s)	32, 442, 751, 781
NlaIII	CATG	4 cut(s)	379, 555, 661, 758
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	498
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	3 cut(s)	354, 417, 665
PfeI	GAWTC	2 cut(s)	641, 732
PkrI	GCNGC	2 cut(s)	256, 801
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
Ppu21I	YACGTR	2 cut(s)	728, 796
Psp6I	CCWGG	4 cut(s)	145, 382, 403, 742
PspCI	CACGTG	1 cut(s)	728
PspGI	CCWGG	4 cut(s)	145, 382, 403, 742
PspN4I	GGNNCC	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	573, 794
RsaNI	GTAC	2 cut(s)	572, 793
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	5 cut(s)	8, 168, 197, 234, 269
SatI	GCNGC	2 cut(s)	255, 800
Sau3AI	GATC	4 cut(s)	32, 442, 751, 781
ScrFI	CCNGG	4 cut(s)	147, 384, 405, 744
SfaNI	GCATC	1 cut(s)	731
SfcI	CTRYAG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
SsiI	CCGC	3 cut(s)	81, 279, 799
StyD4I	CCNGG	4 cut(s)	145, 382, 403, 742
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	2 cut(s)	730, 798
TaqI	TCGA	4 cut(s)	88, 151, 735, 768
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	2 cut(s)	641, 732
Tru1I	TTAA	5 cut(s)	8, 168, 197, 234, 269
Tru9I	TTAA	5 cut(s)	8, 168, 197, 234, 269
TscAI	CASTG	2 cut(s)	264, 718
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	611, 674
TspRI	CASTG	2 cut(s)	264, 718
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	4 cut(s)	10, 44, 193, 609
XceI	RCATGY	1 cut(s)	555
XmnI	GAANNNNTTC	3 cut(s)	354, 417, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.