pycom16g12870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0007338
Physical Location & Seq
Reverse (-)
9091028 .. 9092331
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGTGGAAACGTGCAAGGATTGAGCGGATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCGTCTTCCAATAGCAGCACATTTGCCATGCTGCTCACCATTCTCTTCTGTCTCGTGCTAATCTTACAAGGAATTTCGTATAGAAGAAGCTCACCTGTAAACTTTGAGGGATCTCCAGTGTCTGCAGGAGGAGCAGAGGGCAATTTGATCTCAGTTCAGTACTATCCAAATCCATCATCAAACGAACCTGGTTCTGCGTCCCCCAATAAAGTAGAGCAGGTTGCTGGTTCGGATCCACAGGAGAAGCTGAAAAGATGGGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.82

Weight (kDa)

10.0

Isoelectric Point (pI)

74.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 181, 290, 303
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 53, 153, 310
AluI AGCT 3 cut(s) 53, 153, 310
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 3 cut(s) 181, 290, 303
AlwNI CAGNNNCTG 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 53, 78, 94
ApoI RAATTY 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 91, 147
BamHI GGATCC 1 cut(s) 295
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 40, 81, 90
BccI CCATC 2 cut(s) 244, 312
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 3 cut(s) 54, 79, 95
BlsI GCNGC 3 cut(s) 55, 80, 96
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 40, 81, 90
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 173, 210, 295
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 3 cut(s) 181, 290, 303
BsrBI CCGCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 179
BssMI GATC 3 cut(s) 173, 210, 295
BssSI CACGAG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 57, 214
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 176, 213, 298
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 173, 210, 295
BstMWI GCNNNNNNNGC 2 cut(s) 59, 194
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 40, 81, 90
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 173, 295
BstYI RGATCY 2 cut(s) 173, 295
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 185
CseI GACGC 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 250
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 35, 53, 153, 310
CviKI_1 RGCY 4 cut(s) 35, 53, 153, 310
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 57, 214
DpnI GATC 3 cut(s) 175, 212, 297
DpnII GATC 3 cut(s) 173, 210, 295
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 94
FaiI YATR 2 cut(s) 92, 144
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 54, 79, 95
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 3 cut(s) 54, 79, 95
GluI GCNGC 3 cut(s) 54, 79, 95
GsuI CTGGAG 1 cut(s) 162
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 94
HphI GGTGA 2 cut(s) 91, 147
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 14, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 194
HpyF3I CTNAG 2 cut(s) 57, 214
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 3 cut(s) 173, 210, 295
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 171, 174, 192, 237, 264, 266, 273, 287, 309
Lsp1109I GCAGC 3 cut(s) 40, 81, 90
LweI GCATC 1 cut(s) 71
MabI ACCWGGT 1 cut(s) 250
MaeII ACGT 1 cut(s) 10
MalI GATC 3 cut(s) 175, 212, 297
MbiI CCGCTC 1 cut(s) 25
MboI GATC 3 cut(s) 173, 210, 295
MboII GAAGA 5 cut(s) 52, 55, 60, 100, 159
MflI RGATCY 2 cut(s) 173, 295
MluCI AATT 2 cut(s) 135, 205
MnlI CCTC 3 cut(s) 163, 185, 193
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 59, 194
NdeII GATC 3 cut(s) 173, 210, 295
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 297
PkrI GCNGC 3 cut(s) 55, 80, 96
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 2 cut(s) 173, 295
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SatI GCNGC 3 cut(s) 54, 79, 95
Sau3AI GATC 3 cut(s) 173, 210, 295
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 252
SetI ASST 7 cut(s) 13, 55, 155, 160, 253, 285, 312
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 2 cut(s) 135, 205
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 250
TaiI ACGT 1 cut(s) 13
TasI AATT 2 cut(s) 135, 205
TatI WGTACW 1 cut(s) 222
TscAI CASTG 1 cut(s) 186
TseI GCWGC 3 cut(s) 53, 78, 94
TspDTI ATGAA 2 cut(s) 44, 62
TspRI CASTG 1 cut(s) 186
XapI RAATTY 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.