Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008978

Physical Location & Seq

Genomic Coordinates Forward (+)

10082730 .. 10087818

Gene Structure 5089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14060.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGGCAGCAGCGGAAAGGGCCGGACAGTTCTGGAGGTGGGAGCCGACGGCGTCGCTCTCATCACCATCATCAACCCACCTGTCAATTCCCTCTCGTTCGATGTGTTGTACAGCTTGAAAGACAGTTATGAGGAGGCCTTGCGAAGAAATGATGTGAAGGCAATTGTTATAACAGGTGCTAAAGGAAAATTTTCGGGTGGTTTCGATATTTCTGCTTTCGGTGGACTCCAAGGGGGGCAGAAGCAGGAGCAAAAGCTCGGTTTTATATCCGTGGAGGTAATCACTGACATTTTTGAAGGTGCAAGGAAACCGTCAGTTGCCGCCATTGATGGCCTTGCACTGGGGGGAGGTTTGGAGGTGGCAATGGCATGTCATGCCCGAATTTCGACTCCTACTGCACAATTAGGGTTGCCCGAGCTGCAGCTTGGACTCATTCCCGGTTTTGGAGGAACGCAACGGCTTCCACGTCTTGTTGGAATCTCAAAGGCACTTGAGATGATGCTGTTGGTAAGCACTGCACGTAAGTGGGTGTTGGATATCTTGGAGCGTAGAAGACCTTGGGTTGCTAGTCTTCACAAAACCGACAAGTTAGAGCCCCTTGGAGAAGCTAGGGAAATACTTAAATTTGCAAGAGCTCAAGTCCGGAAGCAGGCTCCCAATCTCAAACACCCATTGGTTTGCATTGATGTTGTTGAGGAGGGTATAGCTTCTGGGGGTCGGTCTGGACTTTTGAAGGAGGCTGAATCATTTCAAGGACTTCTGCAGTCAGACACTTGCAAGAGCTTGGTCCATGTCTTCTTTGCTCAACGTGGAACATCAAGGGTACCTGGGGTTACTGATCGTGGTTTGATGCCTAGACGAGTGACTAAGGTTGCTGTCATTGGTGGAGGGTTAATGGGGTCTGGAATAACTACCGCATTGATTCTTAGTGGTTATCCAGCGATCCTGAAAGAAGTAAACGATAAGTTCTTGCAGGCTGGGATTGGTAGAGTCAGAGCCAATCTGCAGAGCCGTGTCAAGAAAGGGAAAATGACTCAAGAAAAGTTTGAGAAGACCGTCTCTCTTCTTAAGGGTGTCCTGGATTATGAAAACTTTAGAGATGTAGATATGGTCATAGAGGCCGTTATTGAGAATGTTTCTCTAAAGCAGCAGATTTTTGCTGATCTTGAAAAATATTGCCCACAACACTGCATACTTGCAAGTAATACTTCCACAATCGACTTGAATCTCATTGGAGAGAAGACCAAGTCTCATGATCGGATTATTGGTGCCCATTTCTTTAGCCCGGCACATGTCATGCCACTTCTGGAAATTGTTCGTACTAATCAGACATCTCCCCAAGTTATTGTTGATTTGCTAGAAGTTGGGAAGAGAATAAAGAAAACACCAGTTGTTGTTGGGAATTGCACAGGATTTGCTGTGAACAGAATGTTCTTTCCTTATACGCAAGCTGCTCTCTTACTTGTTGAACGAGGTGCTGATGTTTATCAGATTGATATGGTAATCACCAAATTCGGAATGCCTATGGGCCCATTCAGATTGGTTGATCTGGTTGGGTTTGGCGTGGCAATTGCAACTGGCATGCAATTTGTTGTGAACTTTCCTGAGCGGACATATAAATCAATGCTTATCCCCTTGATGCAGGAGGACGGGAGGGCAGGTGAAACTACTCGAAAAGGGTTCTATACTTATGATGATAGGCGCAAAGCTAGCCCAGATCCTCAATTGAAAGGATATATTGAGAAGTCAAGAAGCATTTCGGGTGTTTCCATAGATCCCAAGCTACTGAAGTTATCAGAACAGGACATAGTGGAGATGATATTTTTCCCTGTTGTAAATGAGGCATGCCGGGTGCTTGCTGAAGGTATTGCTGTAAAAGCTGCTGACCTTGACATTGCTGCAATCATGGGAATGGGTTTCCCACCATACAGGGGAGGTCTCTTGTTCTGGGCTGATTTACTTGGATCCAAGTACATATATTCAAGATTGGAGGAATGGTCAAATACTTATGGTGAATTTTTCAAGCCTTGCGCCTATTTGGCTGAAAGAGCTGCAAACGGGGCTCCTCTGAGTTCTCACTCGAACCAAGCAAAATCTCGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004165 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009062 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

702

Amino Acids

76.53

Weight (kDa)

9.19

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06860
fragaria_vesca	FvH4_4g18500 FvH4_4g18500 FvH4_4g18500
malus_domestica	MD13G1166700.v1.1 MD16G1166400.v1.1
prunus_persica	Prupe.1G133000_v2.0.a1
pyrus_communis	pycom13g14220 pycom16g14060
rosa_chinensis	RchiOBHm_Chr4g0423051
rosa_laevigata	RLG00000007590
rosa_multiflora	Rmu_co8121856.1_g000001 Rmu_sc0006639.1_g000001 Rmu_sc0023965.1_g000001 Rmu_sc0028464.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365130
rosa_rugosa	Rorug04G0183300.1
rosa_samantha	Rh4AG243100 Rh4BG247800 Rh4CG257600 Rh4DG242800
rosa_wichuraiana	Rw4G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 2104
AarI	CACCTGC	1 cut(s)	1649
Acc36I	ACCTGC	1 cut(s)	1649
Acc65I	GGTACC	1 cut(s)	823
AccB1I	GGYRCC	2 cut(s)	823, 1268
AccBSI	CCGCTC	1 cut(s)	1609
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	4 cut(s)	12, 321, 915, 1609
AclWI	GGATC	5 cut(s)	937, 1712, 1769, 1959, 1972
AcsI	RAATTY	5 cut(s)	188, 381, 623, 1511, 2015
AcuI	CTGAAG	2 cut(s)	1808, 1881
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	4 cut(s)	110, 825, 1321, 1973
AfiI	CCNNNNNNNGG	4 cut(s)	340, 443, 649, 1931
AflII	CTTAAG	1 cut(s)	1067
AflIII	ACRYGT	1 cut(s)	1291
AjiI	CACGTC	1 cut(s)	467
AjnI	CCWGG	2 cut(s)	826, 1077
AleI	CACNNNNGTG	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	3 cut(s)	1063, 1254, 1943
AlwI	GGATC	5 cut(s)	937, 1712, 1769, 1959, 1972
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	5 cut(s)	19, 135, 331, 1119, 1528
ApaI	GGGCCC	1 cut(s)	1532
ApeKI	GCWGC	9 cut(s)	6, 9, 418, 421, 1147, 1451, 1880, 1898, 2051
ApoI	RAATTY	5 cut(s)	188, 381, 623, 1511, 2015
Asp700I	GAANNNNTTC	4 cut(s)	190, 747, 1314, 1756
Asp718I	GGTACC	1 cut(s)	823
AspLEI	GCGC	2 cut(s)	1704, 2033
AspS9I	GGNCC	4 cut(s)	19, 787, 1528, 1529
AsuC2I	CCSGG	3 cut(s)	438, 1286, 1850
AsuHPI	GGTGA	4 cut(s)	55, 1498, 1673, 2024
AsuNHI	GCTAGC	1 cut(s)	1709
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	2 cut(s)	1273, 1532
BamHI	GGATCC	1 cut(s)	1964
BanI	GGYRCC	2 cut(s)	823, 1268
BanII	GRGCYC	4 cut(s)	597, 637, 1532, 2065
BbsI	GAAGAC	5 cut(s)	559, 563, 787, 1058, 1247
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	9 cut(s)	18, 21, 405, 433, 1159, 1438, 1867, 1885, 2038
BccI	CCATC	2 cut(s)	74, 323
BceAI	ACGGC	4 cut(s)	64, 473, 996, 1106
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	828, 1079
BcnI	CCSGG	3 cut(s)	438, 1286, 1850
BcoDI	GTCTC	3 cut(s)	1063, 1254, 1943
BfaI	CTAG	5 cut(s)	567, 609, 855, 1358, 1710
BfmI	CTRYAG	3 cut(s)	419, 761, 1004
BfrI	CTTAAG	1 cut(s)	1067
BfuAI	ACCTGC	1 cut(s)	1649
BglI	GCCNNNNNGGC	1 cut(s)	2039
Bme1390I	CCNGG	5 cut(s)	438, 828, 1079, 1286, 1850
Bme18I	GGWCC	1 cut(s)	787
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	467
BmgT120I	GGNCC	4 cut(s)	19, 787, 1528, 1529
BmiI	GGNNCC	7 cut(s)	43, 654, 825, 1270, 1530, 1966, 2064
BmrFI	CCNGG	5 cut(s)	438, 828, 1079, 1286, 1850
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	489, 840, 1629
BmtI	GCTAGC	1 cut(s)	1713
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	5 cut(s)	559, 563, 787, 1058, 1247
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	1605
BpuEI	CTTGAG	3 cut(s)	512, 621, 1020
BpuMI	CCSGG	3 cut(s)	438, 1286, 1850
BsaAI	YACGTR	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	1485
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	1943
BsaJI	CCNNGG	5 cut(s)	229, 270, 557, 598, 827
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	4 cut(s)	1645, 1675, 1982, 2012
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 443, 649, 1931
Bse1I	ACTGG	3 cut(s)	345, 1388, 1582
Bse3DI	GCAATG	2 cut(s)	369, 1893
Bse8I	GATNNNNATC	1 cut(s)	1485
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	828, 1079
BseDI	CCNNGG	5 cut(s)	229, 270, 557, 598, 827
BseJI	GATNNNNATC	1 cut(s)	1485
BseLI	CCNNNNNNNGG	4 cut(s)	340, 443, 649, 1931
BseMI	GCAATG	2 cut(s)	369, 1893
BseMII	CTCAG	2 cut(s)	1596, 2060
BseNI	ACTGG	3 cut(s)	345, 1388, 1582
BseRI	GAGGAG	3 cut(s)	146, 710, 2055
BseSI	GKGCMC	2 cut(s)	1273, 1532
BseXI	GCAGC	9 cut(s)	18, 21, 405, 433, 1159, 1438, 1867, 1885, 2038
BseYI	CCCAGC	1 cut(s)	977
BsgI	GTGCAG	2 cut(s)	381, 501
BshFI	GGCC	5 cut(s)	21, 137, 333, 1121, 1530
BshNI	GGYRCC	2 cut(s)	823, 1268
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	5 cut(s)	22, 438, 643, 1286, 1849
BslI	CCNNNNNNNGG	4 cut(s)	340, 443, 649, 1931
BsmAI	GTCTC	3 cut(s)	1063, 1254, 1943
BsmBI	CGTCTC	1 cut(s)	1063
BsmI	GAATGC	1 cut(s)	1524
BsnI	GGCC	5 cut(s)	21, 137, 333, 1121, 1530
Bso31I	GGTCTC	1 cut(s)	1943
BsoBI	CYCGRG	1 cut(s)	413
Bsp120I	GGGCCC	1 cut(s)	1528
Bsp1286I	GDGCHC	5 cut(s)	597, 637, 1273, 1532, 2065
Bsp13I	TCCGGA	1 cut(s)	642
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
BspACI	CCGC	4 cut(s)	12, 321, 915, 1609
BspANI	GGCC	5 cut(s)	21, 137, 333, 1121, 1530
BspCNI	CTCAG	2 cut(s)	1597, 2061
BspEI	TCCGGA	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	1252
BspLI	GGNNCC	7 cut(s)	43, 654, 825, 1270, 1530, 1966, 2064
BspMAI	CTGCAG	3 cut(s)	423, 765, 1008
BspMI	ACCTGC	1 cut(s)	1649
BspOI	GCTAGC	1 cut(s)	1713
BspPI	GGATC	5 cut(s)	937, 1712, 1769, 1959, 1972
BspT107I	GGYRCC	2 cut(s)	823, 1268
BspTI	CTTAAG	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	1943
BsrBI	CCGCTC	1 cut(s)	1609
BsrDI	GCAATG	2 cut(s)	369, 1893
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	3 cut(s)	345, 1388, 1582
BssECI	CCNNGG	5 cut(s)	229, 270, 557, 598, 827
BssMI	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	3 cut(s)	229, 557, 598
Bst2UI	CCWGG	2 cut(s)	828, 1079
Bst4CI	ACNGT	4 cut(s)	28, 125, 312, 1057
Bst6I	CTCTTC	2 cut(s)	1068, 1364
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	7 cut(s)	651, 975, 1449, 1583, 1711, 1846, 1857
BstDEI	CTNAG	4 cut(s)	867, 926, 1605, 2069
BstDSI	CCRYGG	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	1704, 2033
BstKTI	GATC	8 cut(s)	841, 945, 1165, 1258, 1549, 1720, 1777, 1967
BstMAI	GTCTC	3 cut(s)	1063, 1254, 1943
BstMBI	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 374, 418, 1710, 1877, 2039, 2048, 2060
BstNI	CCWGG	2 cut(s)	828, 1079
BstNSI	RCATGY	4 cut(s)	372, 1295, 1585, 1848
BstSCI	CCNGG	5 cut(s)	436, 826, 1077, 1284, 1848
BstSFI	CTRYAG	3 cut(s)	419, 761, 1004
BstSLI	GKGCMC	2 cut(s)	1273, 1532
BstV1I	GCAGC	9 cut(s)	18, 21, 405, 433, 1159, 1438, 1867, 1885, 2038
BstV2I	GAAGAC	5 cut(s)	559, 563, 787, 1058, 1247
BstX2I	RGATCY	3 cut(s)	1717, 1774, 1964
BstYI	RGATCY	3 cut(s)	1717, 1774, 1964
BsuRI	GGCC	5 cut(s)	21, 137, 333, 1121, 1530
BtgI	CCRYGG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	467
BtsI	GCAGTG	2 cut(s)	513, 1186
BtsIMutI	CAGTG	4 cut(s)	282, 338, 513, 1186
BveI	ACCTGC	1 cut(s)	1649
Cac8I	GCNNGC	7 cut(s)	651, 975, 1449, 1583, 1711, 1846, 1857
CciI	TCATGA	1 cut(s)	1252
CfoI	GCGC	2 cut(s)	1704, 2033
Cfr13I	GGNCC	4 cut(s)	19, 787, 1528, 1529
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	109, 824, 1320, 1972
CviAII	CATG	9 cut(s)	369, 374, 791, 1253, 1292, 1297, 1582, 1845, 1906
CviQI	GTAC	4 cut(s)	109, 824, 1320, 1972
DdeI	CTNAG	4 cut(s)	867, 926, 1605, 2069
DpnI	GATC	8 cut(s)	840, 944, 1164, 1257, 1548, 1719, 1776, 1966
DpnII	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
Eam1104I	CTCTTC	2 cut(s)	1068, 1364
EarI	CTCTTC	2 cut(s)	1068, 1364
Ecl136II	GAGCTC	1 cut(s)	635
Eco130I	CCWWGG	3 cut(s)	229, 557, 598
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	4 cut(s)	597, 637, 1532, 2065
Eco31I	GGTCTC	1 cut(s)	1943
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	787
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	1808, 1881
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	826, 1077
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	3 cut(s)	229, 557, 598
EcoT38I	GRGCYC	4 cut(s)	597, 637, 1532, 2065
ErhI	CCWWGG	3 cut(s)	229, 557, 598
Esp3I	CGTCTC	1 cut(s)	1063
FaeI	CATG	9 cut(s)	372, 377, 794, 1256, 1295, 1300, 1585, 1848, 1909
FalI	AAGNNNNNCTT	2 cut(s)	1192, 1224
FatI	CATG	9 cut(s)	368, 373, 790, 1252, 1291, 1296, 1581, 1844, 1905
FriOI	GRGCYC	4 cut(s)	597, 637, 1532, 2065
FspBI	CTAG	5 cut(s)	567, 609, 855, 1358, 1710
GlaI	GCGC	2 cut(s)	1703, 2032
GsaI	CCCAGC	1 cut(s)	981
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	5 cut(s)	21, 137, 333, 1121, 1530
HapII	CCGG	5 cut(s)	22, 438, 643, 1286, 1849
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	1704, 2033
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	9 cut(s)	372, 377, 794, 1256, 1295, 1300, 1585, 1848, 1909
Hin6I	GCGC	2 cut(s)	1702, 2031
HinP1I	GCGC	2 cut(s)	1702, 2031
HinfI	GANTC	9 cut(s)	225, 388, 429, 477, 743, 922, 990, 1033, 1225
HpaII	CCGG	5 cut(s)	22, 438, 643, 1286, 1849
HphI	GGTGA	4 cut(s)	55, 1498, 1673, 2024
Hpy166II	GTNNAC	4 cut(s)	224, 958, 1423, 1597
Hpy188I	TCNGA	9 cut(s)	769, 995, 1260, 1329, 1491, 1517, 1538, 1798, 2070
Hpy8I	GTNNAC	4 cut(s)	224, 958, 1423, 1597
Hpy99I	CGWCG	2 cut(s)	50, 56
HpyAV	CCTTC	4 cut(s)	151, 290, 727, 1856
HpyCH4III	ACNGT	4 cut(s)	28, 125, 312, 1057
HpyCH4IV	ACGT	3 cut(s)	466, 520, 808
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 374, 418, 1710, 1877, 2039, 2048, 2060
HpyF3I	CTNAG	4 cut(s)	867, 926, 1605, 2069
HpySE526I	ACGT	3 cut(s)	466, 520, 808
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	9 cut(s)	372, 377, 794, 1256, 1295, 1300, 1585, 1848, 1909
HspAI	GCGC	2 cut(s)	1702, 2031
Kpn2I	TCCGGA	1 cut(s)	642
KpnI	GGTACC	1 cut(s)	827
Kzo9I	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
LmnI	GCTCC	5 cut(s)	41, 247, 544, 658, 2068
Lsp1109I	GCAGC	9 cut(s)	18, 21, 405, 433, 1159, 1438, 1867, 1885, 2038
LweI	GCATC	3 cut(s)	489, 840, 1629
MaeI	CTAG	5 cut(s)	567, 609, 855, 1358, 1710
MaeII	ACGT	3 cut(s)	466, 520, 808
MaeIII	GTNAC	2 cut(s)	832, 862
MalI	GATC	8 cut(s)	840, 944, 1164, 1257, 1548, 1719, 1776, 1966
MbiI	CCGCTC	1 cut(s)	1609
MboI	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
MboII	GAAGA	8 cut(s)	156, 563, 564, 787, 1055, 1063, 1252, 1381
MfeI	CAATTG	3 cut(s)	162, 1569, 1724
MflI	RGATCY	3 cut(s)	1717, 1774, 1964
MhlI	GDGCHC	5 cut(s)	597, 637, 1273, 1532, 2065
MlyI	GAGTC	5 cut(s)	219, 382, 423, 999, 1027
MmeI	TCCRAC	2 cut(s)	454, 513
MroI	TCCGGA	1 cut(s)	642
MroXI	GAANNNNTTC	4 cut(s)	190, 747, 1314, 1756
MseI	TTAA	3 cut(s)	621, 893, 1068
MslI	CAYNNNNRTG	2 cut(s)	523, 1910
MspA1I	CMGCKG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	5 cut(s)	22, 438, 643, 1286, 1849
MspR9I	CCNGG	5 cut(s)	438, 828, 1079, 1286, 1850
MunI	CAATTG	3 cut(s)	162, 1569, 1724
Mva1269I	GAATGC	1 cut(s)	1524
MvaI	CCWGG	2 cut(s)	828, 1079
MwoI	GCNNNNNNNGC	8 cut(s)	18, 374, 418, 1710, 1877, 2039, 2048, 2060
NciI	CCSGG	3 cut(s)	438, 1286, 1850
NdeII	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
NheI	GCTAGC	1 cut(s)	1709
NlaIII	CATG	9 cut(s)	372, 377, 794, 1256, 1295, 1300, 1585, 1848, 1909
NlaIV	GGNNCC	7 cut(s)	43, 654, 825, 1270, 1530, 1966, 2064
NmuCI	GTSAC	1 cut(s)	862
NspI	RCATGY	4 cut(s)	372, 1295, 1585, 1848
OliI	CACNNNNGTG	1 cut(s)	523
PaeI	GCATGC	2 cut(s)	1585, 1848
PagI	TCATGA	1 cut(s)	1252
PaqCI	CACCTGC	1 cut(s)	1649
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	1291
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	1 cut(s)	1524
PdmI	GAANNNNTTC	4 cut(s)	190, 747, 1314, 1756
PfeI	GAWTC	4 cut(s)	477, 743, 922, 1225
PflFI	GACNNNGTC	2 cut(s)	50, 1246
PfoI	TCCNGGA	1 cut(s)	1077
PleI	GAGTC	5 cut(s)	219, 382, 423, 998, 1027
PpsI	GAGTC	5 cut(s)	219, 382, 423, 998, 1027
Ppu21I	YACGTR	1 cut(s)	521
PscI	ACATGT	1 cut(s)	1291
PsiI	TTATAA	2 cut(s)	170, 2104
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	826, 1077
PspFI	CCCAGC	1 cut(s)	977
PspGI	CCWGG	2 cut(s)	826, 1077
PspN4I	GGNNCC	7 cut(s)	43, 654, 825, 1270, 1530, 1966, 2064
PspOMI	GGGCCC	1 cut(s)	1528
PspPI	GGNCC	4 cut(s)	19, 787, 1528, 1529
PstI	CTGCAG	3 cut(s)	423, 765, 1008
PsuI	RGATCY	3 cut(s)	1717, 1774, 1964
PsyI	GACNNNGTC	2 cut(s)	50, 1246
RsaI	GTAC	4 cut(s)	110, 825, 1321, 1973
RsaNI	GTAC	4 cut(s)	109, 824, 1320, 1972
RseI	CAYNNNNRTG	2 cut(s)	523, 1910
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	621, 893, 1068
Sau3AI	GATC	8 cut(s)	838, 942, 1162, 1255, 1546, 1717, 1774, 1964
Sau96I	GGNCC	4 cut(s)	19, 787, 1528, 1529
SchI	GAGTC	5 cut(s)	219, 382, 423, 999, 1027
ScrFI	CCNGG	5 cut(s)	438, 828, 1079, 1286, 1850
SduI	GDGCHC	5 cut(s)	597, 637, 1273, 1532, 2065
SfaNI	GCATC	3 cut(s)	489, 840, 1629
SfcI	CTRYAG	3 cut(s)	419, 761, 1004
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	523, 1910
SmlI	CTYRAG	4 cut(s)	491, 636, 1035, 1067
SmoI	CTYRAG	4 cut(s)	491, 636, 1035, 1067
SphI	GCATGC	2 cut(s)	1585, 1848
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	12, 321, 915, 1609
SspI	AATATT	1 cut(s)	1175
SspMI	CTAG	5 cut(s)	567, 609, 855, 1358, 1710
SstI	GAGCTC	1 cut(s)	637
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	5 cut(s)	436, 826, 1077, 1284, 1848
StyI	CCWWGG	3 cut(s)	229, 557, 598
TaaI	ACNGT	4 cut(s)	28, 125, 312, 1057
TaiI	ACGT	3 cut(s)	469, 523, 811
TaqI	TCGA	6 cut(s)	99, 204, 386, 1218, 1672, 2081
TaqII	GACCGA	1 cut(s)	708
TatI	WGTACW	2 cut(s)	108, 1971
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	4 cut(s)	477, 743, 922, 1225
Tru1I	TTAA	3 cut(s)	621, 893, 1068
Tru9I	TTAA	3 cut(s)	621, 893, 1068
TscAI	CASTG	4 cut(s)	289, 345, 520, 1193
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	9 cut(s)	6, 9, 418, 421, 1147, 1451, 1880, 1898, 2051
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	1 cut(s)	1101
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	4 cut(s)	289, 345, 520, 1193
Tth111I	GACNNNGTC	2 cut(s)	50, 1246
Vha464I	CTTAAG	1 cut(s)	1067
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	5 cut(s)	188, 381, 623, 1511, 2015
XceI	RCATGY	4 cut(s)	372, 1295, 1585, 1848
XmnI	GAANNNNTTC	4 cut(s)	190, 747, 1314, 1756
XspI	CTAG	5 cut(s)	567, 609, 855, 1358, 1710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.