Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006639.1

Orthogroup ID

OG0008978

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4067

Gene Structure 4067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1324 bp

tacagcattgattcttagtaattatccagtgatcctgaaagaagtaaatgagaagttcttgcaggctgggattggtagagttaaagccaatctgcagagccgcgtcaaaaaagggaaaatgactgaagagaagtttgagaagacactctctcttcttaaaggtaccctggactatgaaagctttagagatgttgacatggtcatagaggcagttattgagaaggtttctttaaagcaacaaatttttgctgaccttgaaaaatattgcccacaacactgcatacttgctagtaacacttccacaattgacttgaaccttattggagagaagaccaaatcccatgatcgaattattggagcccatttctttagtccagcacatatcatgccacttttggaaattgttcgcactaatcagacatctccacgagttattgttgatttgctagaagttgggaagaagataaagaaaaccccagttgttgttgggaactgcactggatttgctgttaacagaatgttctttccttatacccaagctggtcttctgcttattgagcgtggtgcagatgtatatcagattgacagggcaatcaccaaatttggaatgcccatgggcccattcagattggctgatctggttggctttggtgtggcgattgcaactggcatgcaatttattgagaattttcctgagcggacatataagtcgatgcttattcctatgatgcaggaggatgggagagcaggtgaaactacaaaaagagggttttatgtttatgatgataaacgcaaagctaagccagatcctgaattgaagaaatacattgagaagtcaagaagcatttctggtctttcaatagatgccaagctagtgaagttaccagaaaaggacattgtggaaatgatctttttccctgttgtgaatgaggcctgcagagtgtatgctgaaggtattgctgtaaaggctgctgaccttgatattgcttcagtcatgggcatggggtttccaccttacaggggaggtatcatgttctgggccgatttacttggatccaaatacatatattcaagactggagcaatggtcaaacatttatggtgaatttttcaagccttgtgcctatttggctgaaagggctgcacagggagctcctctgagctctcctttgaagcaatcaaaatctcgtttccgactctcaaataggggcaggatgtcaagcaagggaggcacccagaacgaagaggtttcgaagcttaaaaagaagattactaaatgccaagaggaaaagctggctattgcacgagaaatagtggtggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004165 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009062 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

440

Amino Acids

49.39

Weight (kDa)

9.37

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06860
fragaria_vesca	FvH4_4g18500 FvH4_4g18500 FvH4_4g18500
malus_domestica	MD13G1166700.v1.1 MD16G1166400.v1.1
prunus_persica	Prupe.1G133000_v2.0.a1
pyrus_communis	pycom13g14220 pycom16g14060
rosa_chinensis	RchiOBHm_Chr4g0423051
rosa_laevigata	RLG00000007590
rosa_multiflora	Rmu_co8121856.1_g000001 Rmu_sc0006639.1_g000001 Rmu_sc0023965.1_g000001 Rmu_sc0028464.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365130
rosa_rugosa	Rorug04G0183300.1
rosa_samantha	Rh4AG243100 Rh4BG247800 Rh4CG257600 Rh4DG242800
rosa_wichuraiana	Rw4G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	738
AasI	GACNNNNNNGTC	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	738
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	2 cut(s)	162, 1230
AccBSI	CCGCTC	1 cut(s)	698
AccII	CGCG	1 cut(s)	103
AciI	CCGC	2 cut(s)	101, 698
AclWI	GGATC	4 cut(s)	26, 801, 1048, 1061
AcsI	RAATTY	4 cut(s)	241, 600, 686, 1104
AcuI	CTGAAG	3 cut(s)	145, 970, 973
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AgsI	TTSAA	7 cut(s)	258, 314, 818, 859, 1072, 1112, 1172
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	529, 561
AluBI	AGCT	8 cut(s)	181, 540, 798, 872, 1152, 1162, 1256, 1292
AluI	AGCT	8 cut(s)	181, 540, 798, 872, 1152, 1162, 1256, 1292
Alw21I	GWGCWC	2 cut(s)	1154, 1164
AlwI	GGATC	4 cut(s)	26, 801, 1048, 1061
AlwNI	CAGNNNCTG	1 cut(s)	810
AoxI	GGCC	4 cut(s)	617, 931, 1039, 1318
ApaI	GGGCCC	1 cut(s)	621
ApeKI	GCWGC	2 cut(s)	969, 1140
ApoI	RAATTY	4 cut(s)	241, 600, 686, 1104
Asp700I	GAANNNNTTC	2 cut(s)	403, 845
Asp718I	GGTACC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	617, 618, 1039
AsuHPI	GGTGA	3 cut(s)	587, 762, 1113
AsuII	TTCGAA	1 cut(s)	1251
BaeGI	GKGCMC	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	1053
BanI	GGYRCC	2 cut(s)	162, 1230
BanII	GRGCYC	4 cut(s)	362, 621, 1154, 1164
BauI	CACGAG	2 cut(s)	427, 1303
BbsI	GAAGAC	3 cut(s)	147, 336, 537
Bbv12I	GWGCWC	2 cut(s)	1154, 1164
BbvI	GCAGC	2 cut(s)	956, 1127
BccI	CCATC	1 cut(s)	732
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	3 cut(s)	289, 447, 873
BfmI	CTRYAG	2 cut(s)	93, 935
BfuAI	ACCTGC	1 cut(s)	738
BglI	GCCNNNNNGGC	1 cut(s)	1128
BisI	GCNGC	3 cut(s)	101, 970, 1141
BlpI	GCTNAGC	1 cut(s)	799
BlsI	GCNGC	3 cut(s)	102, 971, 1142
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	617, 618, 1039
BmiI	GGNNCC	5 cut(s)	164, 359, 619, 1055, 1232
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	3 cut(s)	703, 718, 854
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	3 cut(s)	147, 336, 537
BpmI	CTGGAG	1 cut(s)	1098
Bpu10I	CCTNAGC	1 cut(s)	694
Bpu1102I	GCTNAGC	1 cut(s)	799
Bpu14I	TTCGAA	1 cut(s)	1251
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	166, 613
BsaXI	ACNNNNNCTCC	4 cut(s)	734, 764, 1071, 1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse1I	ACTGG	5 cut(s)	27, 477, 503, 671, 1081
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	166, 613
BseGI	GGATG	2 cut(s)	743, 1219
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	2 cut(s)	685, 1149
BseNI	ACTGG	5 cut(s)	27, 477, 503, 671, 1081
BseRI	GAGGAG	1 cut(s)	1144
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	2 cut(s)	956, 1127
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	3 cut(s)	479, 586, 1126
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	619, 933, 1041, 1320
BshNI	GGYRCC	2 cut(s)	162, 1230
BsiHKAI	GWGCWC	2 cut(s)	1154, 1164
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	4 cut(s)	619, 933, 1041, 1320
Bsp119I	TTCGAA	1 cut(s)	1251
Bsp120I	GGGCCC	1 cut(s)	617
Bsp1286I	GDGCHC	4 cut(s)	362, 621, 1154, 1164
Bsp143I	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
Bsp1720I	GCTNAGC	1 cut(s)	799
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	2 cut(s)	101, 698
BspANI	GGCC	4 cut(s)	619, 933, 1041, 1320
BspCNI	CTCAG	2 cut(s)	686, 1150
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	5 cut(s)	164, 359, 619, 1055, 1232
BspMAI	CTGCAG	2 cut(s)	97, 939
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	4 cut(s)	26, 801, 1048, 1061
BspT104I	TTCGAA	1 cut(s)	1251
BspT107I	GGYRCC	2 cut(s)	162, 1230
BsrBI	CCGCTC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	1089
BsrI	ACTGG	5 cut(s)	27, 477, 503, 671, 1081
BssECI	CCNNGG	2 cut(s)	166, 613
BssMI	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
BssSI	CACGAG	2 cut(s)	427, 1303
BssT1I	CCWWGG	1 cut(s)	613
Bst2BI	CACGAG	2 cut(s)	427, 1303
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	3 cut(s)	121, 157, 1237
BstBI	TTCGAA	1 cut(s)	1251
BstC8I	GCNNGC	4 cut(s)	64, 672, 935, 1294
BstDEI	CTNAG	4 cut(s)	15, 694, 799, 1158
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	743, 1219
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	6 cut(s)	34, 347, 638, 809, 910, 1056
BstMBI	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
BstMWI	GCNNNNNNNGC	6 cut(s)	557, 966, 1128, 1137, 1149, 1228
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	93, 935
BstSLI	GKGCMC	1 cut(s)	621
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	956, 1127
BstV2I	GAAGAC	3 cut(s)	147, 336, 537
BstX2I	RGATCY	2 cut(s)	806, 1053
BstYI	RGATCY	2 cut(s)	806, 1053
BsuRI	GGCC	4 cut(s)	619, 933, 1041, 1320
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	743, 1219
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	3 cut(s)	34, 275, 496
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	4 cut(s)	64, 672, 935, 1294
CaiI	CAGNNNCTG	1 cut(s)	810
Cfr13I	GGNCC	3 cut(s)	617, 618, 1039
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	8 cut(s)	197, 342, 386, 614, 671, 995, 1001, 1031
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	15, 694, 799, 1158
DpnI	GATC	6 cut(s)	33, 346, 637, 808, 909, 1055
DpnII	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
DraI	TTTAAA	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
Eam1104I	CTCTTC	3 cut(s)	121, 157, 1237
EarI	CTCTTC	3 cut(s)	121, 157, 1237
Ecl136II	GAGCTC	2 cut(s)	1152, 1162
Eco130I	CCWWGG	1 cut(s)	613
Eco147I	AGGCCT	1 cut(s)	933
Eco24I	GRGCYC	4 cut(s)	362, 621, 1154, 1164
Eco53kI	GAGCTC	2 cut(s)	1152, 1162
Eco57I	CTGAAG	3 cut(s)	145, 970, 973
EcoICRI	GAGCTC	2 cut(s)	1152, 1162
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	613
EcoT38I	GRGCYC	4 cut(s)	362, 621, 1154, 1164
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	8 cut(s)	200, 345, 389, 617, 674, 998, 1004, 1034
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	8 cut(s)	196, 341, 385, 613, 670, 994, 1000, 1030
Fnu4HI	GCNGC	3 cut(s)	101, 970, 1141
FokI	GGATG	2 cut(s)	750, 1226
FriOI	GRGCYC	4 cut(s)	362, 621, 1154, 1164
Fsp4HI	GCNGC	3 cut(s)	101, 970, 1141
FspBI	CTAG	3 cut(s)	289, 447, 873
GluI	GCNGC	3 cut(s)	101, 970, 1141
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	1098
HaeIII	GGCC	4 cut(s)	619, 933, 1041, 1320
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	200, 345, 389, 617, 674, 998, 1004, 1034
HincII	GTYRAC	2 cut(s)	194, 512
HindII	GTYRAC	2 cut(s)	194, 512
HindIII	AAGCTT	2 cut(s)	179, 1254
HinfI	GANTC	2 cut(s)	11, 1195
HpaI	GTTAAC	1 cut(s)	512
HphI	GGTGA	3 cut(s)	587, 762, 1113
Hpy166II	GTNNAC	2 cut(s)	194, 512
Hpy188I	TCNGA	5 cut(s)	418, 580, 627, 1159, 1194
Hpy188III	TCNNGA	5 cut(s)	35, 693, 810, 838, 1072
Hpy8I	GTNNAC	2 cut(s)	194, 512
HpyAV	CCTTC	2 cut(s)	215, 945
HpyF10VI	GCNNNNNNNGC	6 cut(s)	557, 966, 1128, 1137, 1149, 1228
HpyF3I	CTNAG	4 cut(s)	15, 694, 799, 1158
Hsp92II	CATG	8 cut(s)	200, 345, 389, 617, 674, 998, 1004, 1034
KpnI	GGTACC	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	512
Kzo9I	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
LmnI	GCTCC	4 cut(s)	357, 1079, 1149, 1157
Lsp1109I	GCAGC	2 cut(s)	956, 1127
LweI	GCATC	3 cut(s)	703, 718, 854
MaeI	CTAG	3 cut(s)	289, 447, 873
MaeIII	GTNAC	2 cut(s)	291, 880
MalI	GATC	6 cut(s)	33, 346, 637, 808, 909, 1055
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	2 cut(s)	806, 1053
MhlI	GDGCHC	4 cut(s)	362, 621, 1154, 1164
MlyI	GAGTC	1 cut(s)	1189
MmeI	TCCRAC	1 cut(s)	1217
MnlI	CCTC	9 cut(s)	200, 728, 759, 923, 1017, 1165, 1221, 1238, 1277
MroXI	GAANNNNTTC	2 cut(s)	403, 845
MseI	TTAA	5 cut(s)	82, 157, 231, 511, 1258
MslI	CAYNNNNRTG	1 cut(s)	999
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	557, 966, 1128, 1137, 1149, 1228
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
NlaIII	CATG	8 cut(s)	200, 345, 389, 617, 674, 998, 1004, 1034
NlaIV	GGNNCC	5 cut(s)	164, 359, 619, 1055, 1232
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	1251
PaeI	GCATGC	1 cut(s)	674
PaqCI	CACCTGC	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	933
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	2 cut(s)	403, 845
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	102, 971, 1142
PleI	GAGTC	1 cut(s)	1189
PpsI	GAGTC	1 cut(s)	1189
Psp124BI	GAGCTC	2 cut(s)	1154, 1164
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	5 cut(s)	164, 359, 619, 1055, 1232
PspOMI	GGGCCC	1 cut(s)	617
PspPI	GGNCC	3 cut(s)	617, 618, 1039
PstI	CTGCAG	2 cut(s)	97, 939
PstNI	CAGNNNCTG	1 cut(s)	810
PsuI	RGATCY	2 cut(s)	806, 1053
PsyI	GACNNNGTC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	999
SacI	GAGCTC	2 cut(s)	1154, 1164
SaqAI	TTAA	5 cut(s)	82, 157, 231, 511, 1258
SatI	GCNGC	3 cut(s)	101, 970, 1141
Sau3AI	GATC	6 cut(s)	31, 344, 635, 806, 907, 1053
Sau96I	GGNCC	3 cut(s)	617, 618, 1039
SchI	GAGTC	1 cut(s)	1189
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	4 cut(s)	362, 621, 1154, 1164
SfaNI	GCATC	3 cut(s)	703, 718, 854
SfcI	CTRYAG	2 cut(s)	93, 935
SfuI	TTCGAA	1 cut(s)	1251
SmiMI	CAYNNNNRTG	1 cut(s)	999
SphI	GCATGC	1 cut(s)	674
SseBI	AGGCCT	1 cut(s)	933
SsiI	CCGC	2 cut(s)	101, 698
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	3 cut(s)	289, 447, 873
SstI	GAGCTC	2 cut(s)	1154, 1164
StuI	AGGCCT	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	613
TaqI	TCGA	3 cut(s)	347, 711, 1251
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	82, 157, 231, 511, 1258
Tru9I	TTAA	5 cut(s)	82, 157, 231, 511, 1258
TscAI	CASTG	3 cut(s)	34, 282, 503
TseI	GCWGC	2 cut(s)	969, 1140
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	3 cut(s)	34, 282, 503
Tth111I	GACNNNGTC	1 cut(s)	198
XapI	RAATTY	4 cut(s)	241, 600, 686, 1104
XceI	RCATGY	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	403, 845
XspI	CTAG	3 cut(s)	289, 447, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.