Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023965.1

Orthogroup ID

OG0008978

Physical Location & Seq

Genomic Coordinates Reverse (-)

4533 .. 6423

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgggtagcaaaacgaagggaaggactgtgcttgaggttggagctgatggggtggcgctcatcaccatcatcaaccctcctgtcaattccctctcctttgatgtgttatttggcttgaaagagagctatgaggaggctctgaggagagaagatgtcaaggcaattgtcgttacaggtgcaagagggaaattctctggcggatttgatattactgcttttggtggacttcaaggaggccacaaagcggagccgaagccaggttatatatctgtggaggttatcactaacagtgtagaaggtgctaggaaaccttcagttgctgccattgatggcctagcgttgggtggaggattagaggttgcaatggcttgccatgctcgaatatcaactccgactgcccaattaggcttgccagaacttcagcttggactcatccctggatttggaggaacgcaacggcttccgcgtcttgttggaatttcaaaggcacttgaaatgatgctgacttcaaaaccggttaaaggggaagaggctcatgatttaggccttgttgatgctatagtttcacctgatgagttggtaagcactgcacgtcggtgggccttggatatcttggagcgtcggagaccatgggttgctagtcttcataacttttgcgtgctgacacttgcaagagcttggtccacgtcttctttgctcaacgtggaacatcaaaggtacctggggttactgatcgaggtttggtgcctagacgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004165 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009062 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

252

Amino Acids

26.93

Weight (kDa)

6.24

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06860
fragaria_vesca	FvH4_4g18500 FvH4_4g18500 FvH4_4g18500
malus_domestica	MD13G1166700.v1.1 MD16G1166400.v1.1
prunus_persica	Prupe.1G133000_v2.0.a1
pyrus_communis	pycom13g14220 pycom16g14060
rosa_chinensis	RchiOBHm_Chr4g0423051
rosa_laevigata	RLG00000007590
rosa_multiflora	Rmu_co8121856.1_g000001 Rmu_sc0006639.1_g000001 Rmu_sc0023965.1_g000001 Rmu_sc0028464.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365130
rosa_rugosa	Rorug04G0183300.1
rosa_samantha	Rh4AG243100 Rh4BG247800 Rh4CG257600 Rh4DG242800
rosa_wichuraiana	Rw4G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	2 cut(s)	717, 744
AccII	CGCG	1 cut(s)	466
AciI	CCGC	3 cut(s)	198, 245, 464
AcsI	RAATTY	2 cut(s)	188, 477
AcuI	CTGAAG	2 cut(s)	297, 404
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	5 cut(s)	244, 257, 340, 443, 521
AgeI	ACCGGT	1 cut(s)	514
AgsI	TTSAA	5 cut(s)	118, 230, 483, 494, 510
AjiI	CACGTC	2 cut(s)	593, 687
AjnI	CCWGG	3 cut(s)	256, 436, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AleI	CACNNNNGTG	1 cut(s)	595
AluBI	AGCT	4 cut(s)	44, 126, 424, 677
AluI	AGCT	4 cut(s)	44, 126, 424, 677
Alw26I	GTCTC	1 cut(s)	619
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	4 cut(s)	235, 331, 544, 600
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	188, 477
AsiGI	ACCGGT	1 cut(s)	514
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	600, 681
AsuHPI	GGTGA	2 cut(s)	55, 558
AvaII	GGWCC	1 cut(s)	681
BanI	GGYRCC	2 cut(s)	717, 744
BbsI	GAAGAC	2 cut(s)	635, 681
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	3 cut(s)	41, 74, 323
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	3 cut(s)	258, 438, 722
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	4 cut(s)	303, 335, 639, 749
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	258, 438, 722
Bme18I	GGWCC	1 cut(s)	681
BmgBI	CACGTC	2 cut(s)	593, 687
BmgT120I	GGNCC	2 cut(s)	600, 681
BmiI	GGNNCC	3 cut(s)	249, 719, 746
BmrFI	CCNGG	3 cut(s)	258, 438, 722
BmsI	GCATC	2 cut(s)	489, 544
BpiI	GAAGAC	2 cut(s)	635, 681
BpuEI	CTTGAG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	4 cut(s)	436, 603, 629, 721
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 257, 340, 443, 521
Bse118I	RCCGGY	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	258, 438, 722
BseDI	CCNNGG	4 cut(s)	436, 603, 629, 721
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	5 cut(s)	244, 257, 340, 443, 521
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	2 cut(s)	146, 157
BseXI	GCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	4 cut(s)	237, 333, 546, 602
BshNI	GGYRCC	2 cut(s)	717, 744
BshTI	ACCGGT	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	515
BslI	CCNNNNNNNGG	5 cut(s)	244, 257, 340, 443, 521
BsmAI	GTCTC	1 cut(s)	619
BsnI	GGCC	4 cut(s)	237, 333, 546, 602
Bso31I	GGTCTC	1 cut(s)	619
Bsp143I	GATC	1 cut(s)	732
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	3 cut(s)	198, 245, 464
BspANI	GGCC	4 cut(s)	237, 333, 546, 602
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	3 cut(s)	249, 719, 746
BspT107I	GGYRCC	2 cut(s)	717, 744
BspTNI	GGTCTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	4 cut(s)	436, 603, 629, 721
BssMI	GATC	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	603, 629
Bst2UI	CCWGG	3 cut(s)	258, 438, 722
Bst4CI	ACNGT	2 cut(s)	28, 290
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	370, 410, 659
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	735
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	732
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	3 cut(s)	258, 438, 722
BstSCI	CCNGG	3 cut(s)	256, 436, 720
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	2 cut(s)	635, 681
BsuRI	GGCC	4 cut(s)	237, 333, 546, 602
BtgI	CCRYGG	1 cut(s)	629
BtrI	CACGTC	2 cut(s)	593, 687
BtsCI	GGATG	1 cut(s)	432
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	295, 585
Cac8I	GCNNGC	3 cut(s)	370, 410, 659
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	600, 681
CseI	GACGC	2 cut(s)	455, 608
Csp6I	GTAC	1 cut(s)	718
CspAI	ACCGGT	1 cut(s)	514
CviAII	CATG	3 cut(s)	374, 536, 630
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	734
DpnII	GATC	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	603, 629
Eco147I	AGGCCT	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	297, 404
EcoRII	CCWGG	3 cut(s)	256, 436, 720
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	603, 629
ErhI	CCWWGG	2 cut(s)	603, 629
FaeI	CATG	3 cut(s)	377, 539, 633
FaiI	YATR	8 cut(s)	129, 264, 266, 375, 537, 560, 631, 648
FatI	CATG	3 cut(s)	373, 535, 629
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	4 cut(s)	303, 335, 639, 749
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	4 cut(s)	237, 333, 546, 602
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	2 cut(s)	455, 608
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	377, 539, 633
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	429
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	2 cut(s)	55, 558
Hpy166II	GTNNAC	2 cut(s)	224, 684
Hpy188I	TCNGA	3 cut(s)	141, 393, 624
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	2 cut(s)	224, 684
Hpy99I	CGWCG	2 cut(s)	597, 624
HpyAV	CCTTC	4 cut(s)	10, 15, 290, 321
HpyCH4III	ACNGT	2 cut(s)	28, 290
HpyCH4IV	ACGT	3 cut(s)	592, 686, 702
HpyCH4V	TGCA	4 cut(s)	179, 362, 590, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	3 cut(s)	592, 686, 702
Hsp92II	CATG	3 cut(s)	377, 539, 633
HspAI	GCGC	1 cut(s)	56
KpnI	GGTACC	1 cut(s)	721
Kzo9I	GATC	1 cut(s)	732
LmnI	GCTCC	3 cut(s)	41, 247, 616
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	489, 544
MaeI	CTAG	4 cut(s)	303, 335, 639, 749
MaeII	ACGT	3 cut(s)	592, 686, 702
MaeIII	GTNAC	2 cut(s)	169, 726
MalI	GATC	1 cut(s)	734
MboI	GATC	1 cut(s)	732
MboII	GAAGA	4 cut(s)	161, 539, 635, 681
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	5 cut(s)	85, 162, 188, 401, 477
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	4 cut(s)	19, 416, 454, 602
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	595
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	3 cut(s)	258, 438, 722
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	3 cut(s)	258, 438, 722
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	1 cut(s)	732
NlaIII	CATG	3 cut(s)	377, 539, 633
NlaIV	GGNNCC	3 cut(s)	249, 719, 746
OliI	CACNNNNGTG	1 cut(s)	595
PagI	TCATGA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	256, 436, 720
PspGI	CCWGG	3 cut(s)	256, 436, 720
PspN4I	GGNNCC	3 cut(s)	249, 719, 746
PspPI	GGNCC	2 cut(s)	600, 681
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	732
Sau96I	GGNCC	2 cut(s)	600, 681
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	3 cut(s)	258, 438, 722
SfaNI	GCATC	2 cut(s)	489, 544
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	85, 162, 188, 401, 477
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	3 cut(s)	198, 245, 464
SspMI	CTAG	4 cut(s)	303, 335, 639, 749
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	3 cut(s)	256, 436, 720
StyI	CCWWGG	2 cut(s)	603, 629
TaaI	ACNGT	2 cut(s)	28, 290
TaiI	ACGT	3 cut(s)	595, 689, 705
TaqI	TCGA	2 cut(s)	379, 735
TasI	AATT	5 cut(s)	85, 162, 188, 401, 477
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	295, 592
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	295, 592
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	2 cut(s)	188, 477
XspI	CTAG	4 cut(s)	303, 335, 639, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.