Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028464.1

Orthogroup ID

OG0008978

Physical Location & Seq

Genomic Coordinates Forward (+)

21022 .. 21929

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028464.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggtagcaaagcgaagggaaggactgtgcttgaggttggagctgatggggtggcgctcatcaccatcatcaaccctcctgtcaattccctctcctttgatgtgttatttggcttgaaagagagctatgaggaggctctgaggagagaagatgtcaaggcaattgtcgttacaggtgcaagagggaaattctctggcggatttgatattactgcttttggtggacttcaaggaggccagaaagcggagccgaagcctggttatatatctgtggaggttatcactaacagtgtagaaggtgctaggaaaccttcagttgctgccattgatggcctcgcattgggtggaggactagaggttgcaatggcttgccatgctcgaatatcaactccgactgcccaattaggcttgccagaacttcagcttggactcatccctggatttggaggtacagctagatttttgaaatgtttgaagtgtgtattgtttgtatctggtagcggcttctgtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004165 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009062 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

171

Amino Acids

17.58

Weight (kDa)

7.64

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06860
fragaria_vesca	FvH4_4g18500 FvH4_4g18500 FvH4_4g18500
malus_domestica	MD13G1166700.v1.1 MD16G1166400.v1.1
prunus_persica	Prupe.1G133000_v2.0.a1
pyrus_communis	pycom13g14220 pycom16g14060
rosa_chinensis	RchiOBHm_Chr4g0423051
rosa_laevigata	RLG00000007590
rosa_multiflora	Rmu_co8121856.1_g000001 Rmu_sc0006639.1_g000001 Rmu_sc0023965.1_g000001 Rmu_sc0028464.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365130
rosa_rugosa	Rorug04G0183300.1
rosa_samantha	Rh4AG243100 Rh4BG247800 Rh4CG257600 Rh4DG242800
rosa_wichuraiana	Rw4G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	198, 245, 501
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	297, 404
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	4 cut(s)	244, 257, 340, 443
AgsI	TTSAA	4 cut(s)	118, 230, 466, 475
AjnI	CCWGG	2 cut(s)	256, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	4 cut(s)	44, 126, 424, 455
AluI	AGCT	4 cut(s)	44, 126, 424, 455
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	235, 331
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	3 cut(s)	41, 74, 323
BciT130I	CCWGG	2 cut(s)	258, 438
BfaI	CTAG	3 cut(s)	303, 353, 456
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	2 cut(s)	321, 502
BlsI	GCNGC	2 cut(s)	322, 503
Bme1390I	CCNGG	2 cut(s)	258, 438
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	258, 438
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 257, 340, 443
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	258, 438
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	4 cut(s)	244, 257, 340, 443
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	2 cut(s)	146, 157
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	237, 333
BslI	CCNNNNNNNGG	4 cut(s)	244, 257, 340, 443
BsnI	GGCC	2 cut(s)	237, 333
BspACI	CCGC	3 cut(s)	198, 245, 501
BspANI	GGCC	2 cut(s)	237, 333
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	258, 438
Bst4CI	ACNGT	2 cut(s)	28, 290
BstC8I	GCNNGC	2 cut(s)	370, 410
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	258, 438
BstSCI	CCNGG	2 cut(s)	256, 436
BstV1I	GCAGC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	237, 333
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	370, 410
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	297, 404
EcoRII	CCWGG	2 cut(s)	256, 436
FaeI	CATG	1 cut(s)	377
FaiI	YATR	4 cut(s)	129, 264, 266, 375
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	321, 502
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	2 cut(s)	321, 502
FspBI	CTAG	3 cut(s)	303, 353, 456
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	321, 502
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	237, 333
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	141, 393
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	10, 15, 290, 321
HpyCH4III	ACNGT	2 cut(s)	28, 290
HpyCH4V	TGCA	2 cut(s)	179, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	41, 247
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	303, 353, 456
MaeIII	GTNAC	2 cut(s)	169, 509
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	4 cut(s)	85, 162, 188, 401
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	19, 416
MspR9I	CCNGG	2 cut(s)	258, 438
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	258, 438
MwoI	GCNNNNNNNGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	322, 503
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	256, 436
PspGI	CCWGG	2 cut(s)	256, 436
PspN4I	GGNNCC	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SatI	GCNGC	2 cut(s)	321, 502
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	2 cut(s)	258, 438
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	85, 162, 188, 401
SsiI	CCGC	3 cut(s)	198, 245, 501
SspMI	CTAG	3 cut(s)	303, 353, 456
StyD4I	CCNGG	2 cut(s)	256, 436
TaaI	ACNGT	2 cut(s)	28, 290
TaqI	TCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	85, 162, 188, 401
TauI	GCSGC	1 cut(s)	504
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	509
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	3 cut(s)	303, 353, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.