Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005678

Physical Location & Seq

Genomic Coordinates Reverse (-)

12282790 .. 12283866

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGTTTTCGCAGAAAAGATCTGCCTCCCTGTAATTTTCAGGACGAGGGAAAATAATACCTTCAAACCTGCCAAACTGTATAAAGTGCAGTACAGGTGTGAGCTACCCTCTCAAGAAGCTTTATCAAGTCGCCGGCATTTTGTAACCGGTGCTGGTGCGTCCATTGCAACAGCTTTAACCATCAGCAATGTCTTAGCACCATCGCCGGTTTGGGCTGATGACAAGTCAAATGGCGAAGAGGAAAATGATGGAGTTATAGGTGCTCTTAAAACGCTGTTCGATCCCAATGAGAAAACAAAGTCCGGGAAAGTGTTGCCAAAGGCTTACTTGAAGTCGGCAAAAGAGGTTGTGAAGACACTGCGTGAATCGCTGAACGAAGACACCAAGGATAATGCTAAATTTCGACGAACTGCAGATGCAGCAAAGGAATCGATTCGAGAGTATTTGAGCACTTGGAGAGGACAACAAGAGGTGGCTCAAGAGGAATCTTACGTTGAGATAGAGAAAGCAATAAGATCGTTGGCCGGATTTTACTCCAAGGCAGGGCCATCTGCTCCACTGCCTGAACAAGTCAAGTCTGAAATATTGAATGACTTGAACACAGCTGAAGAGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

208

Amino Acids

23.0

Weight (kDa)

6.65

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	44 - 207	3.6e-50	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05385 AT1G05385
fragaria_vesca	FvH4_4g15520 FvH4_4g15520 FvH4_4g15520
malus_domestica	MD16G1193700.v1.1
prunus_persica	Prupe.1G013400_v2.0.a1
pyrus_communis	pycom16g16340
rosa_chinensis	RchiOBHm_Chr4g0416241 RchiOBHm_Chr4g0430981
rosa_laevigata	RLG00000008003 RLG00000034653
rosa_roxburghii	Rroxscaffold_1G00031800 Rroxscaffold_5G00360090
rosa_rugosa	Rorug01G0090300 Rorug04G0140200 Rorug04G0140200 Rorug05G0252200 Rorug05G0252300 Rorug05G0252400
rosa_samantha	Rh4AG202200 Rh4BG199600 Rh4CG213700 Rh4DG199500 Rh5AG328000 Rh5CG363600
rosa_wichuraiana	Rw4G017100 Rw4G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	67, 334, 592, 601
AluBI	AGCT	4 cut(s)	106, 122, 176, 608
AluI	AGCT	4 cut(s)	106, 122, 176, 608
Alw21I	GWGCWC	2 cut(s)	268, 455
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	525, 548
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	307
BbsI	GAAGAC	2 cut(s)	362, 387
Bbv12I	GWGCWC	2 cut(s)	268, 455
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	4 cut(s)	191, 211, 245, 559
BcgI	CGANNNNNNTGC	4 cut(s)	414, 448, 501, 535
BcnI	CCSGG	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	362, 387
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpuEI	CTTGAG	2 cut(s)	99, 465
BpuMI	CCSGG	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	387, 540
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse118I	RCCGGY	3 cut(s)	135, 149, 208
Bse3DI	GCAATG	2 cut(s)	165, 196
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	387, 540
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	2 cut(s)	165, 196
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	527, 550
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	268, 455
BsiSI	CCGG	5 cut(s)	136, 150, 209, 306, 528
BslI	CCNNNNNNNGG	1 cut(s)	546
BsnI	GGCC	2 cut(s)	527, 550
Bsp1286I	GDGCHC	2 cut(s)	268, 455
Bsp143I	GATC	3 cut(s)	21, 283, 518
BspANI	GGCC	2 cut(s)	527, 550
BspDI	ATCGAT	1 cut(s)	434
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	165, 196
BsrFI	RCCGGY	3 cut(s)	135, 149, 208
BssAI	RCCGGY	3 cut(s)	135, 149, 208
BssECI	CCNNGG	2 cut(s)	387, 540
BssMI	GATC	3 cut(s)	21, 283, 518
BssT1I	CCWWGG	2 cut(s)	387, 540
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	234, 606
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	24, 286, 521
BstMBI	GATC	3 cut(s)	21, 283, 518
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 167, 370, 422
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	2 cut(s)	362, 387
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	527, 550
BsuTUI	ATCGAT	1 cut(s)	434
BtgZI	GCGATG	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	359, 560
BtsIMutI	CAGTG	2 cut(s)	359, 560
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	137
Cfr10I	RCCGGY	3 cut(s)	135, 149, 208
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	434
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	94
CspAI	ACCGGT	1 cut(s)	149
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	23, 285, 520
DpnII	GATC	3 cut(s)	21, 283, 518
DraIII	CACNNNGTG	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	234, 606
EarI	CTCTTC	2 cut(s)	234, 606
Eco130I	CCWWGG	2 cut(s)	387, 540
EcoT14I	CCWWGG	2 cut(s)	387, 540
ErhI	CCWWGG	2 cut(s)	387, 540
FaiI	YATR	2 cut(s)	84, 260
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	527, 550
HapII	CCGG	5 cut(s)	136, 150, 209, 306, 528
HgaI	GACGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	4 cut(s)	368, 431, 436, 488
HpaII	CCGG	5 cut(s)	136, 150, 209, 306, 528
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	43, 116, 440, 482
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	91, 170, 416, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 167, 370, 422
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	495
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	21, 283, 518
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	23, 285, 520
MboI	GATC	3 cut(s)	21, 283, 518
MboII	GAAGA	4 cut(s)	251, 367, 392, 623
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	268, 455
MluCI	AATT	2 cut(s)	36, 401
MnlI	CCTC	8 cut(s)	38, 42, 121, 235, 340, 455, 466, 478
MroNI	GCCGGC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	179, 270
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	5 cut(s)	136, 150, 209, 306, 528
MspR9I	CCNGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	11, 167, 370, 422
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	3 cut(s)	21, 283, 518
NgoMIV	GCCGGC	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	4 cut(s)	368, 431, 436, 488
PfoI	TCCNGGA	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	179, 270
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	21, 283, 518
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	2 cut(s)	268, 455
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	114, 480
SmoI	CTYRAG	2 cut(s)	114, 480
Sse9I	AATT	2 cut(s)	36, 401
SspI	AATATT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	387, 540
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	4 cut(s)	282, 406, 434, 439
TasI	AATT	2 cut(s)	36, 401
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	4 cut(s)	368, 431, 436, 488
Tru1I	TTAA	2 cut(s)	179, 270
Tru9I	TTAA	2 cut(s)	179, 270
TscAI	CASTG	2 cut(s)	366, 567
TseI	GCWGC	1 cut(s)	422
TspRI	CASTG	2 cut(s)	366, 567
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.