Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

15309676 .. 15310502

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAATGTGCAAGACGATGGGTTGATGAATCCGACGTTAACCAATTGGCTAACATGGGGAAGTATGTTTCCGCCATGGTGGCAGCCGGAGCAAGGATTACATACGCTAACAACCCGCACAGCCACCTATGGTTTTATATAGTAGTGATCACCTCTGTGATGGCTACAGTCTACCAGTTGTACTGGGATTTTGTCAAGGACTGGGGGCTTTTCAACCCAAAATCCAAGAACCTATGGCTAAGAGATGAGCTCGTTCTCAAGAACAAGAACATCTACTATGCTTCTGTTGCCTTGAATGTGGTTTTGAGAGTTGCTTGGGTAGAAACAGTAATGGGATTTCACAGAATTCCGGATGTTGAGTCACGTTTGCTGGACTTTTTGTTAGCTTCGTTAGAGGTTATCCGGCGAGGGCATTGGAACTTTTACAGGTTAGAGAATGAGCATCTAAACAATGTTGGCAAGTACAGGGCAGTGAAAACAGTTCCTTTACCATTCCGCGAGACAGATTCTGACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

173

Amino Acids

20.1

Weight (kDa)

8.99

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	1 - 149	1.6e-48	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	498
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	3 cut(s)	72, 116, 496
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	2 cut(s)	182, 464
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	214, 295
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	250, 386
AluI	AGCT	2 cut(s)	250, 386
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	12, 154
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmrI	ACTGGG	2 cut(s)	193, 211
BmsI	GCATC	1 cut(s)	451
BmuI	ACTGGG	2 cut(s)	193, 211
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	3 cut(s)	175, 188, 206
Bse3DI	GCAATG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	3 cut(s)	175, 188, 206
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	87, 350, 403
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	72, 116, 496
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	175, 188, 206
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	169, 328, 481
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 287
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	181, 463
CviAII	CATG	2 cut(s)	55, 76
CviJI	RGCY	9 cut(s)	50, 86, 123, 164, 208, 238, 250, 386, 516
CviKI_1	RGCY	9 cut(s)	50, 86, 123, 164, 208, 238, 250, 386, 516
CviQI	GTAC	2 cut(s)	181, 463
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	58, 79
FaiI	YATR	9 cut(s)	56, 66, 77, 103, 130, 138, 140, 235, 279
FatI	CATG	2 cut(s)	54, 75
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HapII	CCGG	3 cut(s)	87, 350, 403
Hin1II	CATG	2 cut(s)	58, 79
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	29, 359, 506
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	87, 350, 403
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	40, 172
Hpy188I	TCNGA	2 cut(s)	34, 511
Hpy188III	TCNNGA	2 cut(s)	259, 350
Hpy8I	GTNNAC	2 cut(s)	40, 172
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	169, 328, 481
HpyCH4IV	ACGT	2 cut(s)	36, 364
HpyCH4V	TGCA	2 cut(s)	4, 11
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 287
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	36, 364
Hsp92II	CATG	2 cut(s)	58, 79
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	100, 169, 187, 188, 356, 363, 412, 416, 451
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	2 cut(s)	36, 364
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	44, 345
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	163, 388, 401
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	3 cut(s)	87, 350, 403
MunI	CAATTG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 287
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	58, 79
NmuCI	GTSAC	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	29, 506
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	182, 464
RsaNI	GTAC	2 cut(s)	181, 463
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	9 cut(s)	39, 129, 155, 234, 252, 367, 388, 399, 431
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	44, 345
SsiI	CCGC	3 cut(s)	72, 116, 496
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	169, 328, 481
TaiI	ACGT	2 cut(s)	39, 367
TasI	AATT	2 cut(s)	44, 345
TatI	WGTACW	2 cut(s)	180, 462
TfiI	GAWTC	2 cut(s)	29, 506
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.