Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001424

Physical Location & Seq

Genomic Coordinates Forward (+)

15421571 .. 15423099

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCGACTATCGCAAATTGCCTACTTGGTCTTTCCCTGTCAGCTAAATCCAGATCAGTCACTTCCGATTCTGAAAGGATTTTGAAGCAGTCTGAAGCAATACAAGCACTACAAACTGCTGATAAAATTACGAAAGATAGGAATCCTTACATTTTATTTCACCTTTGTCTAGAACTTGCTGAGCAAAGGAAGTTAGATATTGCACTTTATTATGCAAATCAGCTATTAAAACTTGAGGCTGGGTCCAGTGTAAAATCGTATGCTCTTTTGGCACGAATATTGTCAGCTCAAAAACGGTTCATTGATGCTGAGACTGTAATCAATGCTGCTCTAGATCAGACGGGGAAGTGGGATCAAGGAGAACTGTTGCGAACTAAAGCAAAACTACATATTGCACAAGGCCAGCTGAAGAATGCCATAGAAACATACACCCATCTTCTGGCTGTTCTTCAAGTTCGGACTAAAAACTTAGGTGTTGACAAGAGGCTTTTAAAGAGTAGGAGAAACCATAATAGAAGTTTGGAAATGGAGACGTGGCACGACTTGGCCAATTTATATACAAGCTTGTCCCAATGGCGGGATGCTGAGGTCTGCCTTTCAAAATCCCAGAGCATCAATCCTCATTCTGCTTCCAGATGGCATTCTACAGGTTTCCTCTATGAAGCTAAGGGTCTCCAGCAAGAAGCTTTGGAATCTTTCAGGAAGGCATTAGATTTCGAACCTACCCACGTCCCAAGCTTGATATCCGCTGCCTGTATTCTAAGACAGTTCGGTGGCCAATCTTTACCAGTCGCCAGAAGCTTTCTCATGGATGCGCTACGACTTGACAGAGGAAACCCTTGTGCTTGGTACAATCTCGGGCTGCTGTACAAAGCTGATGCGAGGGCATCAACGCTAGAAACAGCCGAGTGCTTTGAGGCAGCAGCCTTTTTTGAAGAACATGCTCCGATCGAACCCTTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016310 GO:0019637 GO:0030258 GO:0033036 GO:0034613 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0071944 GO:0072657 GO:0072659 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_8

Protein Analysis

322

Amino Acids

36.11

Weight (kDa)

8.8

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28600 AT4G28600 AT4G28600
fragaria_vesca	FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_2g20940 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130 FvH4_4g04130
malus_domestica	MD05G1192700.v1.1 MD10G1179200.v1.1 MD13G1217700.v1.1 MD16G1222900.v1.1
prunus_persica	Prupe.1G044600_v2.0.a1 Prupe.1G044600_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1 Prupe.8G219000_v2.0.a1
pyrus_communis	pycom10g15540 pycom13g19100 pycom16g18670 pycom16g18680
rosa_chinensis	RchiOBHm_Chr4g0394501 RchiOBHm_Chr6g0287321
rosa_laevigata	RLG00000009693 RLG00000012501
rosa_multiflora	Rmu_sc0005424.1_g000020 Rmu_sc0007029.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339560 Rroxscaffold_7G00181540
rosa_rugosa	Rorug03G0365300.1 Rorug03G0365400.1 Rorug03G0365500.1 Rorug06G0187000 Rorug06G0187100 Rorug06G0187100
rosa_samantha	Rh4AG052600 Rh4BG050400 Rh4CG056800 Rh4DG049500 Rh6AG298400 Rh6BG303800 Rh6CG306000 Rh6CG312100 Rh6DG295700
rosa_wichuraiana	Rw4G004240 Rw6G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	577, 747
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	2 cut(s)	546, 775
AcuI	CTGAAG	2 cut(s)	114, 428
AfaI	GTAC	2 cut(s)	851, 869
AfiI	CCNNNNNNNGG	3 cut(s)	439, 576, 577
AgsI	TTSAA	4 cut(s)	85, 452, 600, 935
AjiI	CACGTC	2 cut(s)	534, 730
Alw26I	GTCTC	3 cut(s)	305, 524, 677
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	3 cut(s)	400, 546, 775
ApeKI	GCWGC	5 cut(s)	326, 749, 862, 920, 923
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	717
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	548, 777
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	5 cut(s)	313, 736, 849, 932, 935
BccI	CCATC	2 cut(s)	441, 630
BcoDI	GTCTC	3 cut(s)	305, 524, 677
BfaI	CTAG	3 cut(s)	170, 332, 896
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	5 cut(s)	327, 750, 863, 921, 924
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	5 cut(s)	328, 751, 864, 922, 925
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	857
BmgBI	CACGTC	2 cut(s)	534, 730
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	6 cut(s)	295, 571, 621, 802, 868, 896
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	2 cut(s)	585, 666
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 576, 577
Bse1I	ACTGG	2 cut(s)	246, 788
Bse8I	GATNNNNATC	1 cut(s)	141
BseGI	GGATG	2 cut(s)	586, 817
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	439, 576, 577
BseMII	CTCAG	3 cut(s)	171, 300, 576
BseNI	ACTGG	2 cut(s)	246, 788
BseXI	GCAGC	5 cut(s)	313, 736, 849, 932, 935
BseYI	CCCAGC	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	951
BshFI	GGCC	3 cut(s)	402, 548, 777
BsiEI	CGRYCG	1 cut(s)	951
BsiHKCI	CYCGRG	1 cut(s)	857
BslFI	GGGAC	2 cut(s)	553, 716
BslI	CCNNNNNNNGG	3 cut(s)	439, 576, 577
BsmAI	GTCTC	3 cut(s)	305, 524, 677
BsmBI	CGTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	553, 716
BsmI	GAATGC	2 cut(s)	418, 640
BsnI	GGCC	3 cut(s)	402, 548, 777
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	857
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	4 cut(s)	53, 334, 352, 948
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	577, 747
BspANI	GGCC	3 cut(s)	402, 548, 777
BspCNI	CTCAG	3 cut(s)	172, 301, 577
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	717
BspTNI	GGTCTC	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	246, 788
BssMI	GATC	4 cut(s)	53, 334, 352, 948
Bst4CI	ACNGT	4 cut(s)	297, 316, 366, 768
BstAUI	TGTACA	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	6 cut(s)	180, 309, 469, 585, 666, 761
BstF5I	GGATG	2 cut(s)	586, 817
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	4 cut(s)	56, 337, 355, 951
BstMAI	GTCTC	3 cut(s)	305, 524, 677
BstMBI	GATC	4 cut(s)	53, 334, 352, 948
BstMCI	CGRYCG	1 cut(s)	951
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 269
BstNSI	RCATGY	1 cut(s)	944
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	5 cut(s)	313, 736, 849, 932, 935
BsuRI	GGCC	3 cut(s)	402, 548, 777
BtrI	CACGTC	2 cut(s)	534, 730
BtsCI	GGATG	2 cut(s)	586, 817
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	850, 868
CviAII	CATG	2 cut(s)	808, 941
CviQI	GTAC	2 cut(s)	850, 868
DdeI	CTNAG	6 cut(s)	180, 309, 469, 585, 666, 761
DpnI	GATC	4 cut(s)	55, 336, 354, 950
DpnII	GATC	4 cut(s)	53, 334, 352, 948
DraI	TTTAAA	1 cut(s)	492
EaeI	YGGCCR	2 cut(s)	546, 775
Eco31I	GGTCTC	1 cut(s)	677
Eco32I	GATATC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	114, 428
Eco88I	CYCGRG	1 cut(s)	857
EcoRV	GATATC	1 cut(s)	744
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	2 cut(s)	811, 944
FaqI	GGGAC	2 cut(s)	553, 716
FatI	CATG	2 cut(s)	807, 940
FauI	CCCGC	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	327, 750, 863, 921, 924
FokI	GGATG	2 cut(s)	593, 824
Fsp4HI	GCNGC	5 cut(s)	327, 750, 863, 921, 924
FspBI	CTAG	3 cut(s)	170, 332, 896
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	5 cut(s)	327, 750, 863, 921, 924
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	3 cut(s)	402, 548, 777
HhaI	GCGC	1 cut(s)	817
Hin1II	CATG	2 cut(s)	811, 944
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HincII	GTYRAC	2 cut(s)	6, 478
HindII	GTYRAC	2 cut(s)	6, 478
HindIII	AAGCTT	4 cut(s)	562, 684, 736, 799
HinfI	GANTC	3 cut(s)	68, 142, 692
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	6, 478
Hpy188I	TCNGA	6 cut(s)	67, 73, 94, 339, 459, 948
Hpy188III	TCNNGA	5 cut(s)	51, 170, 332, 633, 700
Hpy8I	GTNNAC	2 cut(s)	6, 478
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	4 cut(s)	297, 316, 366, 768
HpyCH4IV	ACGT	2 cut(s)	533, 729
HpyCH4V	TGCA	3 cut(s)	203, 215, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 269
HpyF3I	CTNAG	6 cut(s)	180, 309, 469, 585, 666, 761
HpySE526I	ACGT	2 cut(s)	533, 729
Hsp92II	CATG	2 cut(s)	811, 944
HspAI	GCGC	1 cut(s)	815
Kzo9I	GATC	4 cut(s)	53, 334, 352, 948
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	5 cut(s)	313, 736, 849, 932, 935
LweI	GCATC	6 cut(s)	295, 571, 621, 802, 868, 896
MaeI	CTAG	3 cut(s)	170, 332, 896
MaeII	ACGT	2 cut(s)	533, 729
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	55, 336, 354, 950
MboI	GATC	4 cut(s)	53, 334, 352, 948
MboII	GAAGA	4 cut(s)	421, 428, 440, 947
MlsI	TGGCCA	2 cut(s)	548, 777
MluCI	AATT	3 cut(s)	16, 126, 550
MluNI	TGGCCA	2 cut(s)	548, 777
MnlI	CCTC	8 cut(s)	229, 477, 580, 630, 665, 824, 876, 910
Mox20I	TGGCCA	2 cut(s)	548, 777
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	2 cut(s)	548, 777
MseI	TTAA	2 cut(s)	227, 491
Msp20I	TGGCCA	2 cut(s)	548, 777
MspA1I	CMGCKG	2 cut(s)	406, 749
Mva1269I	GAATGC	2 cut(s)	418, 640
MwoI	GCNNNNNNNGC	2 cut(s)	104, 269
NdeII	GATC	4 cut(s)	53, 334, 352, 948
NlaIII	CATG	2 cut(s)	811, 944
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	944
NspV	TTCGAA	1 cut(s)	717
PctI	GAATGC	2 cut(s)	418, 640
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	3 cut(s)	68, 142, 692
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	5 cut(s)	328, 751, 864, 922, 925
Ple19I	CGATCG	1 cut(s)	951
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	951
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	2 cut(s)	851, 869
RsaNI	GTAC	2 cut(s)	850, 868
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	227, 491
SatI	GCNGC	5 cut(s)	327, 750, 863, 921, 924
Sau3AI	GATC	4 cut(s)	53, 334, 352, 948
Sau96I	GGNCC	1 cut(s)	243
SfaNI	GCATC	6 cut(s)	295, 571, 621, 802, 868, 896
SfcI	CTRYAG	1 cut(s)	645
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	16, 126, 550
SsiI	CCGC	2 cut(s)	577, 747
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	3 cut(s)	170, 332, 896
TaaI	ACNGT	4 cut(s)	297, 316, 366, 768
TaiI	ACGT	2 cut(s)	536, 732
TaqI	TCGA	4 cut(s)	5, 717, 951, 961
TasI	AATT	3 cut(s)	16, 126, 550
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	3 cut(s)	68, 142, 692
Tru1I	TTAA	2 cut(s)	227, 491
Tru9I	TTAA	2 cut(s)	227, 491
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	326, 749, 862, 920, 923
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	289, 675
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	243
XbaI	TCTAGA	2 cut(s)	169, 331
XceI	RCATGY	1 cut(s)	944
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	3 cut(s)	170, 332, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.