Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

18071745 .. 18074378

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCTTCACCTCCACCGGGTCAGGCACACCTCTCCATTGCTGATGGGGATGAAACAGTTAGAGAGCACCTACTGACAGTGGACGTTGGAGAAGCTGATGGGGACGTGAAATTCCGGATACGAAATCTGGCCAAGAAATCAGACACCACCGGAGCCGCAATACTCAATGGGTTGACCTTGGACATACCAAGGGGTGTGATCATAGGGGTCATTGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTTCGAGCTCTCAACCGCCTCTGGGAGCCGCCATCTGGGACTGTCTTCTTGGACGGTCGTGATATTCTGGACGTCGACGTTCTCAGCCTCCGCCGCAAGGTCGGCATGCTCTTCCAGCTTCCCGTTCTCTTTGAAGGCACAGTTGCAGACAATATACGTTATGGCCCTCAATTAAAGGGGAAGAAGCTGAGTGACGAGGACGTTCACAAGTTGCTGACACTTGTAGACCTTGATTCATCTTTTTCCACCAAGACTGGTTCTGAAATGTCTGTGGGTCAGTCCCAAAGAGTTGCACTTGCTAGGACCCTCGCCAATTCCCCTGAGGTTTTGCTGCTGGATGAGCCAACAAGTGCATTGGATCCAATATCAACAGAGCGCATAGAAGGTGCTTTGGAGAAGCTGACGCAGAAACAGGGGATGACCATTGTGATGGTCTCTCACAGCATCAAACAAATCCAGAGGATTGCTGATATTGTTTGCCTACTTGTGGATGGGGAAATTGTTGAAGTTCTCAAACCAGACCAACTATCTCAAGCGCAGCATCCTATGGCACTACGCTTTCTTGAGCTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

274

Amino Acids

29.5

Weight (kDa)

5.31

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	55 - 198	3.9e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	318, 468
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	7 cut(s)	156, 222, 228, 259, 272, 334, 337
AclWI	GGATC	2 cut(s)	596, 609
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	315
AfiI	CCNNNNNNNGG	5 cut(s)	17, 265, 278, 340, 730
AgsI	TTSAA	2 cut(s)	377, 749
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	7 cut(s)	95, 251, 361, 430, 643, 811, 816
AluI	AGCT	7 cut(s)	95, 251, 361, 430, 643, 811, 816
Alw21I	GWGCWC	3 cut(s)	69, 253, 813
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	596, 609
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	3 cut(s)	129, 214, 406
ApeKI	GCWGC	4 cut(s)	225, 241, 574, 781
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	621, 781
AspS9I	GGNCC	3 cut(s)	215, 407, 546
AsuC2I	CCSGG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	546
AxyI	CCTNAGG	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	253, 813
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	3 cut(s)	69, 253, 813
BbvI	GCAGC	4 cut(s)	228, 237, 561, 793
BccI	CCATC	5 cut(s)	38, 92, 283, 667, 728
BciVI	GTATCC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	9 cut(s)	156, 223, 226, 229, 242, 272, 337, 575, 782
BlpI	GCTNAGC	1 cut(s)	812
BlsI	GCNGC	9 cut(s)	157, 224, 227, 230, 243, 273, 338, 576, 783
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	546
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	215, 407, 546
BmiI	GGNNCC	5 cut(s)	154, 217, 270, 548, 603
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	696, 793
BpiI	GAAGAC	1 cut(s)	280
BplI	GAGNNNNNCTC	1 cut(s)	800
Bpu1102I	GCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	177, 188
BsaWI	WCCGGW	2 cut(s)	114, 149
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 265, 278, 340, 730
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	177, 188
BseGI	GGATG	5 cut(s)	55, 586, 666, 739, 784
BseLI	CCNNNNNNNGG	5 cut(s)	17, 265, 278, 340, 730
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	340, 422, 555
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	4 cut(s)	228, 237, 561, 793
BseYI	CCCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	131, 216, 408
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	3 cut(s)	69, 253, 813
BsiSI	CCGG	3 cut(s)	17, 115, 150
BslFI	GGGAC	3 cut(s)	116, 295, 508
BslI	CCNNNNNNNGG	5 cut(s)	17, 265, 278, 340, 730
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	3 cut(s)	116, 295, 508
BsnI	GGCC	3 cut(s)	131, 216, 408
Bso31I	GGTCTC	1 cut(s)	682
Bsp1286I	GDGCHC	3 cut(s)	69, 253, 813
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	198, 601
Bsp1720I	GCTNAGC	1 cut(s)	812
BspACI	CCGC	7 cut(s)	156, 222, 228, 259, 272, 334, 337
BspANI	GGCC	3 cut(s)	131, 216, 408
BspCNI	CTCAG	3 cut(s)	339, 423, 556
BspEI	TCCGGA	1 cut(s)	114
BspLI	GGNNCC	5 cut(s)	154, 217, 270, 548, 603
BspPI	GGATC	2 cut(s)	596, 609
BspQI	GCTCTTC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	177, 188
BssMI	GATC	2 cut(s)	198, 601
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	177, 188
Bst4CI	ACNGT	5 cut(s)	58, 79, 286, 299, 385
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	326, 431, 564, 812
BstF5I	GGATG	5 cut(s)	55, 586, 666, 739, 784
BstHHI	GCGC	2 cut(s)	621, 781
BstKTI	GATC	2 cut(s)	201, 604
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	2 cut(s)	198, 601
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	4 cut(s)	228, 237, 561, 793
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	601
Bsu36I	CCTNAGG	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	131, 216, 408
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	5 cut(s)	55, 586, 666, 739, 784
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	2 cut(s)	621, 781
Cfr13I	GGNCC	3 cut(s)	215, 407, 546
CseI	GACGC	1 cut(s)	655
CviAII	CATG	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	326, 431, 564, 812
DpnI	GATC	2 cut(s)	200, 603
DpnII	GATC	2 cut(s)	198, 601
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	323
Ecl136II	GAGCTC	2 cut(s)	251, 811
Eco130I	CCWWGG	2 cut(s)	177, 188
Eco24I	GRGCYC	2 cut(s)	253, 813
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	546
Eco53kI	GAGCTC	2 cut(s)	251, 811
Eco81I	CCTNAGG	1 cut(s)	564
EcoICRI	GAGCTC	2 cut(s)	251, 811
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	177, 188
EcoT38I	GRGCYC	2 cut(s)	253, 813
ErhI	CCWWGG	2 cut(s)	177, 188
FaeI	CATG	1 cut(s)	352
FaiI	YATR	7 cut(s)	185, 203, 350, 398, 405, 623, 791
FaqI	GGGAC	3 cut(s)	116, 295, 508
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	318, 468
Fnu4HI	GCNGC	9 cut(s)	156, 223, 226, 229, 242, 272, 337, 575, 782
FokI	GGATG	5 cut(s)	62, 593, 673, 746, 771
FriOI	GRGCYC	2 cut(s)	253, 813
Fsp4HI	GCNGC	9 cut(s)	156, 223, 226, 229, 242, 272, 337, 575, 782
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	620, 780
GluI	GCNGC	9 cut(s)	156, 223, 226, 229, 242, 272, 337, 575, 782
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	131, 216, 408
HapII	CCGG	3 cut(s)	17, 115, 150
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	621, 781
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	2 cut(s)	619, 779
HinP1I	GCGC	2 cut(s)	619, 779
HincII	GTYRAC	2 cut(s)	174, 319
HindII	GTYRAC	2 cut(s)	174, 319
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	3 cut(s)	17, 115, 150
Hpy166II	GTNNAC	6 cut(s)	82, 174, 237, 319, 448, 469
Hpy188I	TCNGA	2 cut(s)	142, 505
Hpy188III	TCNNGA	5 cut(s)	115, 302, 311, 700, 806
Hpy8I	GTNNAC	6 cut(s)	82, 174, 237, 319, 448, 469
Hpy99I	CGWCG	2 cut(s)	320, 323
HpyAV	CCTTC	2 cut(s)	371, 620
HpyCH4III	ACNGT	5 cut(s)	58, 79, 286, 299, 385
HpyCH4IV	ACGT	6 cut(s)	84, 105, 315, 321, 400, 444
HpyCH4V	TGCA	3 cut(s)	389, 536, 596
HpyF10VI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
HpyF3I	CTNAG	4 cut(s)	326, 431, 564, 812
HpySE526I	ACGT	6 cut(s)	84, 105, 315, 321, 400, 444
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	2 cut(s)	619, 779
Kpn2I	TCCGGA	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	198, 601
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	152, 268
Lsp1109I	GCAGC	4 cut(s)	228, 237, 561, 793
LweI	GCATC	2 cut(s)	696, 793
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	6 cut(s)	84, 105, 315, 321, 400, 444
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	200, 603
MboI	GATC	2 cut(s)	198, 601
MboII	GAAGA	3 cut(s)	280, 346, 436
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	3 cut(s)	69, 253, 813
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	4 cut(s)	110, 413, 556, 741
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	9 cut(s)	21, 41, 272, 341, 420, 433, 559, 560, 696
Mox20I	TGGCCA	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	416, 820
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	222, 228
MspI	CCGG	3 cut(s)	17, 115, 150
MspR9I	CCNGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	198, 601
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	5 cut(s)	154, 217, 270, 548, 603
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	9 cut(s)	157, 224, 227, 230, 243, 273, 338, 576, 783
PpuMI	RGGWCCY	1 cut(s)	546
Psp124BI	GAGCTC	2 cut(s)	253, 813
Psp5II	RGGWCCY	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	5 cut(s)	154, 217, 270, 548, 603
PspPI	GGNCC	3 cut(s)	215, 407, 546
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	2 cut(s)	253, 813
SalI	GTCGAC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	416, 820
SatI	GCNGC	9 cut(s)	156, 223, 226, 229, 242, 272, 337, 575, 782
Sau3AI	GATC	2 cut(s)	198, 601
Sau96I	GGNCC	3 cut(s)	215, 407, 546
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	3 cut(s)	69, 253, 813
SfaNI	GCATC	2 cut(s)	696, 793
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	774, 806
SmoI	CTYRAG	2 cut(s)	774, 806
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	4 cut(s)	110, 413, 556, 741
SsiI	CCGC	7 cut(s)	156, 222, 228, 259, 272, 334, 337
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	2 cut(s)	253, 813
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	2 cut(s)	177, 188
TaaI	ACNGT	5 cut(s)	58, 79, 286, 299, 385
TaiI	ACGT	6 cut(s)	87, 108, 318, 324, 403, 447
TaqI	TCGA	2 cut(s)	247, 318
TasI	AATT	4 cut(s)	110, 413, 556, 741
TauI	GCSGC	5 cut(s)	158, 225, 231, 274, 339
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	416, 820
Tru9I	TTAA	2 cut(s)	416, 820
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	225, 241, 574, 781
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	66, 468
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	318, 468
XspI	CTAG	1 cut(s)	543
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.