pycom16g20330

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014429
Physical Location & Seq
Forward (+)
18086742 .. 18088982
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGGGGGTCATTGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTTCGAGCTCTCAACCGCCTCTGGGAGCCGCCATCTGGGACTGTCTTCTTGGACGGTCGTGATATTCTGGACGTCGACGTTCTCAGCCTCCGCCGCAAGGTCGGCATGCTCTTCCAGCTTCCCGTTCTCTTTGAAGGCACAGTTGCAGACAATATACGTTATGGCCCTCAATTAAAGGGGAAGAAGCTGAGTGACGAGGACGTTCACAAGTTGCTGACACTTGTAGACCTTGATTCATCTTTTTCCACCAAGACTGGTTCTGAAATGTCTGTGGGTCAGTCCCAAAGAGTTGCACTTGCTAGGACCCTCGCCAATTCCCCTGAGGTTTTGCTGTTGGATGAGCCAACAAGTGCATTGGATCCAATATCAACAGAGCGCATAGAAGGTGCTTTGGAGAAGCTGAAGCAGAAACAGGGGATGACCATTGTGATGGTCTCTCACAGCATCAAACAAATCCAGAGGATTGCTGATATTGTTTGCCTACTTGTGGATGGGGAAATTGTTGAAGTTCTCAAACCAGACCAACTATCTCAAGCCCAGCATCCCATGGCACTACGCTTTCTTGAGCTCAGCTCTTAA

Protein Analysis

207

Amino Acids

22.51

Weight (kDa)

5.67

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 131 1.2e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67940
fragaria_vesca FvH4_4g06671 FvH4_4g06671
malus_domestica MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica Prupe.1G069500_v2.0.a1
pyrus_communis pycom16g20320 pycom16g20330
rosa_chinensis RchiOBHm_Chr4g0398581
rosa_laevigata RLG00000009342
rosa_roxburghii Rroxscaffold_5G00343550
rosa_rugosa Rorug04G0009500 Rorug04G0009600.1
rosa_samantha Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 117, 267
AciI CCGC 6 cut(s) 21, 27, 58, 71, 133, 136
AclWI GGATC 2 cut(s) 395, 408
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 64, 77, 139, 529
AgsI TTSAA 2 cut(s) 176, 548
AluBI AGCT 6 cut(s) 50, 160, 229, 442, 610, 615
AluI AGCT 6 cut(s) 50, 160, 229, 442, 610, 615
Alw21I GWGCWC 2 cut(s) 52, 612
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 2 cut(s) 395, 408
AoxI GGCC 2 cut(s) 13, 205
ApeKI GCWGC 2 cut(s) 24, 40
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 14, 206, 345
AvaII GGWCC 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 363
BamHI GGATCC 1 cut(s) 400
BanII GRGCYC 2 cut(s) 52, 612
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 52, 612
BbvI GCAGC 2 cut(s) 27, 36
BccI CCATC 3 cut(s) 82, 466, 527
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 21
BisI GCNGC 6 cut(s) 22, 25, 28, 41, 71, 136
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 6 cut(s) 23, 26, 29, 42, 72, 137
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 3 cut(s) 14, 206, 345
BmiI GGNNCC 4 cut(s) 16, 69, 347, 402
BmsI GCATC 2 cut(s) 495, 592
BpiI GAAGAC 1 cut(s) 79
BplI GAGNNNNNCTC 1 cut(s) 599
Bpu1102I GCTNAGC 1 cut(s) 611
BpuEI CTTGAG 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 77, 139, 529
Bse1I ACTGG 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 4 cut(s) 385, 465, 538, 583
BseLI CCNNNNNNNGG 4 cut(s) 64, 77, 139, 529
BseMII CTCAG 3 cut(s) 139, 221, 354
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 27, 36
BseYI CCCAGC 2 cut(s) 17, 579
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 15, 207
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 52, 612
BslFI GGGAC 2 cut(s) 94, 307
BslI CCNNNNNNNGG 4 cut(s) 64, 77, 139, 529
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 2 cut(s) 94, 307
BsnI GGCC 2 cut(s) 15, 207
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 52, 612
Bsp143I GATC 1 cut(s) 400
Bsp1720I GCTNAGC 1 cut(s) 611
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 6 cut(s) 21, 27, 58, 71, 133, 136
BspANI GGCC 2 cut(s) 15, 207
BspCNI CTCAG 3 cut(s) 138, 222, 355
BspLI GGNNCC 4 cut(s) 16, 69, 347, 402
BspPI GGATC 2 cut(s) 395, 408
BspQI GCTCTTC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 85, 98, 184
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 4 cut(s) 125, 230, 363, 611
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 4 cut(s) 385, 465, 538, 583
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 5 cut(s) 21, 27, 135, 144, 157
BstNSI RCATGY 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 27, 36
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 15, 207
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 385, 465, 538, 583
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 3 cut(s) 14, 206, 345
CviAII CATG 2 cut(s) 148, 589
DdeI CTNAG 4 cut(s) 125, 230, 363, 611
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 2 cut(s) 50, 610
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 52, 612
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 345
Eco53kI GAGCTC 2 cut(s) 50, 610
Eco57I CTGAAG 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 363
EcoICRI GAGCTC 2 cut(s) 50, 610
EcoO109I RGGNCCY 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 2 cut(s) 52, 612
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 2 cut(s) 151, 592
FaiI YATR 5 cut(s) 149, 197, 204, 422, 590
FaqI GGGAC 2 cut(s) 94, 307
FatI CATG 2 cut(s) 147, 588
FblI GTMKAC 2 cut(s) 117, 267
Fnu4HI GCNGC 6 cut(s) 22, 25, 28, 41, 71, 136
FokI GGATG 4 cut(s) 392, 472, 545, 570
FriOI GRGCYC 2 cut(s) 52, 612
Fsp4HI GCNGC 6 cut(s) 22, 25, 28, 41, 71, 136
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 419
GluI GCNGC 6 cut(s) 22, 25, 28, 41, 71, 136
GsaI CCCAGC 2 cut(s) 21, 583
HaeIII GGCC 2 cut(s) 15, 207
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 151, 592
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 36, 118, 247, 268
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 4 cut(s) 101, 110, 499, 605
Hpy8I GTNNAC 4 cut(s) 36, 118, 247, 268
Hpy99I CGWCG 2 cut(s) 119, 122
HpyAV CCTTC 2 cut(s) 170, 419
HpyCH4III ACNGT 3 cut(s) 85, 98, 184
HpyCH4IV ACGT 4 cut(s) 114, 120, 199, 243
HpyCH4V TGCA 3 cut(s) 188, 335, 395
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 27, 135, 144, 157
HpyF3I CTNAG 4 cut(s) 125, 230, 363, 611
HpySE526I ACGT 4 cut(s) 114, 120, 199, 243
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 151, 592
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 400
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 2 cut(s) 27, 36
LweI GCATC 2 cut(s) 495, 592
MaeI CTAG 1 cut(s) 342
MaeII ACGT 4 cut(s) 114, 120, 199, 243
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 3 cut(s) 79, 145, 235
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 52, 612
MluCI AATT 3 cut(s) 212, 355, 540
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 7 cut(s) 71, 140, 219, 232, 358, 359, 495
MseI TTAA 2 cut(s) 215, 619
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 2 cut(s) 21, 27
MwoI GCNNNNNNNGC 5 cut(s) 21, 27, 135, 144, 157
NcoI CCATGG 1 cut(s) 588
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 151, 592
NlaIV GGNNCC 4 cut(s) 16, 69, 347, 402
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 23, 26, 29, 42, 72, 137
PpuMI RGGWCCY 1 cut(s) 345
Psp124BI GAGCTC 2 cut(s) 52, 612
Psp5II RGGWCCY 1 cut(s) 345
PspFI CCCAGC 2 cut(s) 17, 579
PspN4I GGNNCC 4 cut(s) 16, 69, 347, 402
PspPI GGNCC 3 cut(s) 14, 206, 345
PspPPI RGGWCCY 1 cut(s) 345
PsuI RGATCY 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 2 cut(s) 52, 612
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 215, 619
SatI GCNGC 6 cut(s) 22, 25, 28, 41, 71, 136
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 3 cut(s) 14, 206, 345
SduI GDGCHC 2 cut(s) 52, 612
SfaNI GCATC 2 cut(s) 495, 592
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 573, 605
SmoI CTYRAG 2 cut(s) 573, 605
SphI GCATGC 1 cut(s) 151
Sse9I AATT 3 cut(s) 212, 355, 540
SsiI CCGC 6 cut(s) 21, 27, 58, 71, 133, 136
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 2 cut(s) 52, 612
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 3 cut(s) 85, 98, 184
TaiI ACGT 4 cut(s) 117, 123, 202, 246
TaqI TCGA 2 cut(s) 46, 117
TasI AATT 3 cut(s) 212, 355, 540
TauI GCSGC 4 cut(s) 24, 30, 73, 138
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 215, 619
Tru9I TTAA 2 cut(s) 215, 619
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 24, 40
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 345
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 2 cut(s) 117, 267
XspI CTAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.