Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Reverse (-)

18514439 .. 18516668

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20660.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTTTTTTTATTTTTATTTTTTTATTTTTTTTATTTTATTACTCCGAAACCCAAATTGCCGTTAGTGATTACAGACAGTCTCTTCAGTTCCAGAATCTAAATGAGGAAAAGAGAAATATACATTTGGAGGTCATTAGAGGTGGTAGACGTGTTGAGGTCTCAATTTATGATCTTGTTGTTGGTGATGTTGTACCCCTTAACATCGGCGATCAGGTCCCTGCTGATGGCATTTTAATAACTGGACACTCACTTGCGATAGATGAGTCTAGTATGACTGGAGAGAGCAAGATTGTACGCAAGGACTCCAAAAATCCATTTCTAATGTCGGGCTGCAAAGTAGCAGATGGAAATGGTAGCATGCTGGTAACCAGTGTTGGGACTAATACTGAATGGGGAATGCTCATGGCTAGTATTTCAGAAGATACTGGTGAAGAAACTCCTTTGCAGGTGCGCTTAAACGGGGTTGCAACTTTCATTGGTATTGTTGGACTCACAGTGGCTTTACTTGTCTTGATAGTCCTGTTGGTTAGATACTTTACTGGCCATACAAAAAATGCAAATGGAAGCCCTCAGTTTAAAGCGGGAAAGACAAAATTTGGAGATGCCATAGATGGAGCCATTAAAATTGTTACTATTGCGGTCACCATTGTGGTGGTTGCTGTTCCTGAAGGGCTCCCATTAGCTGTTACCTTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

234

Amino Acids

25.17

Weight (kDa)

5.22

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	148
AciI	CCGC	2 cut(s)	584, 641
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	71, 690
AfaI	GTAC	2 cut(s)	195, 297
AfiI	CCNNNNNNNGG	2 cut(s)	227, 378
AflIII	ACRYGT	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	1 cut(s)	686
AluI	AGCT	1 cut(s)	686
Alw26I	GTCTC	2 cut(s)	87, 166
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	197, 443, 637
AvaII	GGWCC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	3 cut(s)	221, 341, 608
BceAI	ACGGC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	87, 166
BfaI	CTAG	2 cut(s)	270, 411
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	219, 619, 677
BmsI	GCATC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 378
Bse1I	ACTGG	5 cut(s)	247, 283, 372, 433, 547
BseLI	CCNNNNNNNGG	2 cut(s)	227, 378
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	5 cut(s)	247, 283, 372, 433, 547
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	546
BslFI	GGGAC	2 cut(s)	203, 394
BslI	CCNNNNNNNGG	2 cut(s)	227, 378
BsmAI	GTCTC	2 cut(s)	87, 166
BsmFI	GGGAC	2 cut(s)	203, 394
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	546
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	172, 211
BspACI	CCGC	2 cut(s)	584, 641
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	219, 619, 677
BspMI	ACCTGC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	5 cut(s)	247, 283, 372, 433, 547
BssMI	GATC	2 cut(s)	172, 211
Bst4CI	ACNGT	2 cut(s)	81, 499
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	573
BstEII	GGTNACC	2 cut(s)	367, 643
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	2 cut(s)	175, 214
BstMAI	GTCTC	2 cut(s)	87, 166
BstMBI	GATC	2 cut(s)	172, 211
BstNSI	RCATGY	1 cut(s)	364
BstPI	GGTNACC	2 cut(s)	367, 643
BstV1I	GCAGC	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	379, 504
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	194, 296
CviAII	CATG	2 cut(s)	361, 406
CviJI	RGCY	8 cut(s)	333, 410, 503, 546, 570, 620, 676, 686
CviKI_1	RGCY	8 cut(s)	333, 410, 503, 546, 570, 620, 676, 686
CviQI	GTAC	2 cut(s)	194, 296
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	2 cut(s)	174, 213
DpnII	GATC	2 cut(s)	172, 211
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	71, 690
Eco91I	GGTNACC	2 cut(s)	367, 643
EcoO109I	RGGNCCY	1 cut(s)	217
EcoO65I	GGTNACC	2 cut(s)	367, 643
EcoT38I	GRGCYC	1 cut(s)	678
FaeI	CATG	2 cut(s)	364, 409
FaiI	YATR	7 cut(s)	122, 171, 275, 362, 407, 549, 611
FaqI	GGGAC	2 cut(s)	203, 394
FatI	CATG	2 cut(s)	360, 405
FauI	CCCGC	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	270, 411
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	364, 409
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	4 cut(s)	97, 266, 305, 492
HphI	GGTGA	3 cut(s)	197, 443, 637
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	49, 421
Hpy188III	TCNNGA	3 cut(s)	94, 514, 668
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	2 cut(s)	81, 499
HpyCH4IV	ACGT	2 cut(s)	151, 698
HpyCH4V	TGCA	4 cut(s)	336, 448, 470, 560
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	2 cut(s)	151, 698
Hsp92II	CATG	2 cut(s)	364, 409
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	172, 211
LmnI	GCTCC	2 cut(s)	617, 681
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	270, 411
MaeII	ACGT	2 cut(s)	151, 698
MaeIII	GTNAC	4 cut(s)	367, 631, 643, 688
MalI	GATC	2 cut(s)	174, 213
MboI	GATC	2 cut(s)	172, 211
MboII	GAAGA	3 cut(s)	77, 434, 446
MhlI	GDGCHC	1 cut(s)	678
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	4 cut(s)	57, 165, 596, 627
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	3 cut(s)	275, 299, 486
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	100, 124, 134, 151, 582
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	5 cut(s)	201, 236, 458, 579, 624
MslI	CAYNNNNRTG	2 cut(s)	650, 653
Msp20I	TGGCCA	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	405
NdeII	GATC	2 cut(s)	172, 211
NlaIII	CATG	2 cut(s)	364, 409
NlaIV	GGNNCC	3 cut(s)	219, 619, 677
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	364
PaqCI	CACCTGC	1 cut(s)	439
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	274, 299, 486
PpsI	GAGTC	3 cut(s)	274, 299, 486
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspEI	GGTNACC	2 cut(s)	367, 643
PspN4I	GGNNCC	3 cut(s)	219, 619, 677
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	195, 297
RsaNI	GTAC	2 cut(s)	194, 296
RseI	CAYNNNNRTG	2 cut(s)	650, 653
SaqAI	TTAA	5 cut(s)	201, 236, 458, 579, 624
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	172, 211
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	3 cut(s)	275, 299, 486
SduI	GDGCHC	1 cut(s)	678
SetI	ASST	9 cut(s)	135, 145, 154, 162, 219, 453, 688, 695, 701
SfaNI	GCATC	1 cut(s)	595
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	650, 653
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	4 cut(s)	57, 165, 596, 627
SsiI	CCGC	2 cut(s)	584, 641
SspMI	CTAG	2 cut(s)	270, 411
TaaI	ACNGT	2 cut(s)	81, 499
TaiI	ACGT	2 cut(s)	154, 701
TasI	AATT	4 cut(s)	57, 165, 596, 627
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	5 cut(s)	201, 236, 458, 579, 624
Tru9I	TTAA	5 cut(s)	201, 236, 458, 579, 624
TscAI	CASTG	2 cut(s)	379, 504
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	379, 504
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	2 cut(s)	270, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.