Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Forward (+)

6393474 .. 6395047

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCTGGTTGCAAAATAGCTGATGGAGTCGGTACCATGCTGGTAACGAGTGTTGGAAGCAATACAGGATGGGGATTGTTGATGGCAAGTATCTCTGAGGATACCGGTGAAGAAGCTCCTTTACAGGTGCACTTAAATGGACTTGCAACTTTTATAGGCATAATTGGGCTTTCAGTAGCTGCTTTGGTGCTGATTATTTTGTTGATCAAATACTCTGCGAGATTAGAATTTGATGCGGACAAAACTAGCTTTCTTAAGGCTGTATATGGAGGTGTAAAGATTTTCACCATTGCTGTAAGTGAAGTTTCTGGATGGTTGTTAGGTTTGATGTTTTATGTTGGCCTCTTTGACAATTTTAGAATCATTCAGGTTACCATTCTAGTTGTTGCAGTGCCTGAATGCCTACCTTTGGTCATTACCTTGACGGAAGTAGCAGCTACCACTTTTTTCTTAGGTTGTAATAATACTGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

158

Amino Acids

16.72

Weight (kDa)

4.78

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	104
AluBI	AGCT	5 cut(s)	20, 116, 179, 249, 437
AluI	AGCT	5 cut(s)	20, 116, 179, 249, 437
Alw21I	GWGCWC	1 cut(s)	132
Alw44I	GTGCAC	1 cut(s)	128
AlwNI	CAGNNNCTG	2 cut(s)	179, 395
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	179, 434
ApoI	RAATTY	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	119, 277
BaeGI	GKGCMC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	166, 446
BccI	CCATC	4 cut(s)	17, 63, 76, 306
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	2 cut(s)	246, 380
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	180, 435
BlsI	GCNGC	2 cut(s)	181, 436
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	74, 317
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	166, 446
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	96, 451
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	74, 317
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	166, 446
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	74, 317
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
CaiI	CAGNNNCTG	2 cut(s)	179, 395
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	33
CspAI	ACCGGT	1 cut(s)	104
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	8 cut(s)	20, 116, 169, 179, 249, 260, 342, 437
CviKI_1	RGCY	8 cut(s)	20, 116, 169, 179, 249, 260, 342, 437
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	96, 451
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	38, 155, 161, 265, 267, 336
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	180, 435
FokI	GGATG	2 cut(s)	81, 324
Fsp4HI	GCNGC	2 cut(s)	180, 435
FspBI	CTAG	2 cut(s)	246, 380
GluI	GCNGC	2 cut(s)	180, 435
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	2 cut(s)	27, 360
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	119, 277
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	12, 130, 146, 389
HpyF3I	CTNAG	2 cut(s)	96, 451
Hsp92II	CATG	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	26, 51, 110, 118, 294, 353, 408, 453
Lsp1109I	GCAGC	2 cut(s)	166, 446
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	246, 380
MaeIII	GTNAC	2 cut(s)	43, 370
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	162, 227, 352
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	91, 263, 353
MseI	TTAA	2 cut(s)	134, 255
MslI	CAYNNNNRTG	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	181, 436
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	179, 395
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	134, 255
SatI	GCNGC	2 cut(s)	180, 435
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	162, 227, 352
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	246, 380
TasI	AATT	3 cut(s)	162, 227, 352
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	134, 255
Tru9I	TTAA	2 cut(s)	134, 255
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	179, 434
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	227
XspI	CTAG	2 cut(s)	246, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.