Rh7BG392600

NifU-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017763
Physical Location & Seq
Reverse (-)
43292164 .. 43295452
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG392600.1

Sequence Viewer

Length: 285 bp
ATGGATAAGCTAATCAACGATGGTGGAAACGTCGACATTGTGTCCGTCGAAGACGGCGTCGTTTCTCTCAAGCTCCAAGGGGCTTGTGGAAGCTGTCCTAGCTCAACAACCACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGCAGATGCACTCAAGGATATTCAACAAGTCTTTGATGAAGAAAACAGAGAGACCACAGTTGAGGTGAGGCCTGATCACCATTTGAGTGGTAAGATGCAGAATGAACTTGAAGCACCTGTAATGCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NifU

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

4.94

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NifU PF01106 4 - 53 2.2e-19 NifU-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017763)

Species Orthologous Gene IDs
pyrus_communis pycom16g20660
rosa_chinensis RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata RLG00000014296
rosa_roxburghii Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana Rw7G024550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AccI GTMKAC 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 57
AgsI TTSAA 3 cut(s) 131, 176, 263
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 4 cut(s) 10, 73, 93, 102
AluI AGCT 4 cut(s) 10, 73, 93, 102
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 221, 229
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 70
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 99
BmeRI GACNNNNNGTC 1 cut(s) 40
BmsI GCATC 2 cut(s) 148, 237
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 53, 149
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 57
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 57
BstXI CCANNNNNNTGG 2 cut(s) 121, 239
BsuRI GGCC 1 cut(s) 223
CfoI GCGC 1 cut(s) 279
CseI GACGC 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 1 cut(s) 115
CviJI RGCY 6 cut(s) 10, 73, 83, 93, 102, 223
CviKI_1 RGCY 6 cut(s) 10, 73, 83, 93, 102, 223
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FatI CATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 33
FspBI CTAG 1 cut(s) 99
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 1 cut(s) 278
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HphI GGTGA 2 cut(s) 221, 229
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 3 cut(s) 35, 50, 62
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 155, 161, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 1 cut(s) 237
LweI GCATC 2 cut(s) 148, 237
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 62, 203
MnlI CCTC 2 cut(s) 208, 213
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 119, 237
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 278
PceI AGGCCT 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PflFI GACNNNGTC 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 56
RseI CAYNNNNRTG 2 cut(s) 119, 237
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 226
SetI ASST 7 cut(s) 12, 33, 75, 95, 104, 219, 271
SfaNI GCATC 2 cut(s) 148, 237
SmiMI CAYNNNNRTG 2 cut(s) 119, 237
SmlI CTYRAG 2 cut(s) 68, 164
SmoI CTYRAG 2 cut(s) 68, 164
SseBI AGGCCT 1 cut(s) 223
SspMI CTAG 1 cut(s) 99
StuI AGGCCT 1 cut(s) 223
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 33, 48
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 131, 204, 270
TspGWI ACGGA 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 118
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.