Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Reverse (-)

50870407 .. 50873063

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATAGTTCAGAGTCTACCAAATTTGTAGATCCATCTGTTTCTCTGCTACTCATTAAAGTAACGATTGTTGGAAGCAATACAGGATGGGGATTGTTGATGGCAAGTATCTCTGAGGATACCGGTGAAGAAACTCCTTTACAGGTGCACTTAAATGGACTTGCAACTTTTATATGCATAATTGGGCTTTCCGTAGCGGCTTTGGTGCTGATTATTTTGTTGATCAGATACTCTGCAAGATCAGAATTTGATGCGGATAAAACTAGCTTTCTTAAGGCTGTATATGGAGGTGTAAAGATTTTCACCATTGCTGTGCGAAGACTGTCGGCTTATGAAACTATGGGCTCAGTGACTACAATTTGCAGCGGAAAAAGTGGCATATTGACTTTGAATCAGATGACTCTGGTCGAGGCATATGCTGGGTTAAACAAGATATGTTTACCAGATGATTTGTGCAAGTTACCTGCAAGTATTTCCACTAGACTAAGTGAAGCCATTGCGCTGAATACCAGTGGGAATGTGTTTAAGACACAGGATGGTGAAGTAGAGATCTCTAGAAGTCCCACAGAAAAGGCTATACTTTCATGGGCGGTGAAGGTTCCATTTCAATTTGCTAAAGTTTGTACTATTAGTTTCCAATATTTGAATATTTACTTAGCAATGAAATCTACATTTCAGTTGGGAATGGAGTTCAATGCTATCAGATCCAAGTATGAGTTTCTTTTTGTGTTCCCTTTCAACTTAGAGAAAAAGTGCAATGGTCTTGCAGTGACATATCAGGATAAAAGTTTTATATATTGGATGGGCGCTGCAGAGATCGTTTTAGCTTCATGTACATGGTATCTTGACTCAGACGGGGAAAGAAAGGACATTAACCAAGGAAAGGAGTGTTTCAAAAATGTAATTAATGGCATGGCGGAACGCAGTTTGCGAACTGTTGCCATTGCAACCAGAGAAATTAAATCGACAGATATTCCTGAGGGAGAGAATTCAAGACAATGGGCTTTACTTGAAAATGAGCTACTGTTGCTTACTGTTGTGGGTATAAAGATCTCCCACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

355

Amino Acids

39.01

Weight (kDa)

5.9

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	162 - 349	2.6e-19	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	5 cut(s)	197, 254, 366, 590, 917
AclWI	GGATC	2 cut(s)	26, 699
AcsI	RAATTY	3 cut(s)	23, 245, 988
AfaI	GTAC	2 cut(s)	625, 835
AfiI	CCNNNNNNNGG	1 cut(s)	883
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	1059
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	8 cut(s)	391, 608, 646, 694, 739, 895, 993, 1013
AluBI	AGCT	3 cut(s)	267, 827, 1021
AluI	AGCT	3 cut(s)	267, 827, 1021
Alw21I	GWGCWC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	26, 699
ApaLI	GTGCAC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	363, 809
ApoI	RAATTY	3 cut(s)	23, 245, 988
AseI	ATTAAT	1 cut(s)	906
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	502, 809
AsuHPI	GGTGA	4 cut(s)	137, 295, 551, 604
AxyI	CCTNAGG	1 cut(s)	978
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	375, 796
BccI	CCATC	5 cut(s)	43, 81, 94, 530, 796
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	222
BfaI	CTAG	3 cut(s)	264, 480, 555
BfmI	CTRYAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	2 cut(s)	549, 1050
BisI	GCNGC	3 cut(s)	198, 364, 810
BlsI	GCNGC	3 cut(s)	199, 365, 811
BmiI	GGNNCC	1 cut(s)	600
BmsI	GCATC	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	1062
BsaJI	CCNNGG	1 cut(s)	877
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	510
Bse21I	CCTNAGG	1 cut(s)	978
Bse3DI	GCAATG	5 cut(s)	306, 495, 666, 763, 942
BseDI	CCNNGG	1 cut(s)	877
BseGI	GGATG	3 cut(s)	92, 541, 807
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	5 cut(s)	306, 495, 666, 763, 942
BseMII	CTCAG	4 cut(s)	105, 360, 864, 969
BseNI	ACTGG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	375, 796
BseYI	CCCAGC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	150, 347
Bsp1407I	TGTACA	1 cut(s)	833
Bsp143I	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
BspACI	CCGC	5 cut(s)	197, 254, 366, 590, 917
BspCNI	CTCAG	4 cut(s)	106, 359, 863, 970
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	2 cut(s)	26, 699
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	5 cut(s)	306, 495, 666, 763, 942
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	877
BssMI	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
BssT1I	CCWWGG	1 cut(s)	877
Bst4CI	ACNGT	4 cut(s)	324, 937, 1026, 1036
BstAFI	CTTAAG	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	1062
BstDEI	CTNAG	7 cut(s)	114, 346, 485, 655, 742, 850, 978
BstF5I	GGATG	3 cut(s)	92, 541, 807
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	2 cut(s)	502, 809
BstKTI	GATC	7 cut(s)	34, 225, 242, 552, 707, 819, 1053
BstMBI	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
BstMWI	GCNNNNNNNGC	1 cut(s)	1027
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	375, 796
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	4 cut(s)	31, 549, 704, 1050
BstYI	RGATCY	4 cut(s)	31, 549, 704, 1050
Bsu36I	CCTNAGG	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	92, 541, 807
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	3 cut(s)	354, 517, 774
BveI	ACCTGC	1 cut(s)	472
CfoI	GCGC	2 cut(s)	502, 809
Cfr10I	RCCGGY	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	624, 834
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	585, 831, 837, 913
CviQI	GTAC	2 cut(s)	624, 834
DdeI	CTNAG	7 cut(s)	114, 346, 485, 655, 742, 850, 978
DpnI	GATC	7 cut(s)	33, 224, 241, 551, 706, 818, 1052
DpnII	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
EciI	GGCGGA	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	978
EcoRI	GAATTC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	877
EcoT22I	ATGCAT	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	877
FaeI	CATG	4 cut(s)	588, 834, 840, 916
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	4 cut(s)	584, 830, 836, 912
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	198, 364, 810
FokI	GGATG	3 cut(s)	99, 548, 814
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	198, 364, 810
FspBI	CTAG	3 cut(s)	264, 480, 555
GlaI	GCGC	2 cut(s)	501, 808
GluI	GCNGC	3 cut(s)	198, 364, 810
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	810
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	2 cut(s)	502, 809
Hin1II	CATG	4 cut(s)	588, 834, 840, 916
Hin6I	GCGC	2 cut(s)	500, 807
HinP1I	GCGC	2 cut(s)	500, 807
HinfI	GANTC	4 cut(s)	14, 391, 400, 848
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	137, 295, 551, 604
Hpy166II	GTNNAC	3 cut(s)	18, 148, 440
Hpy188I	TCNGA	7 cut(s)	13, 115, 227, 244, 396, 704, 853
Hpy188III	TCNNGA	5 cut(s)	555, 779, 845, 977, 993
Hpy8I	GTNNAC	3 cut(s)	18, 148, 440
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	4 cut(s)	324, 937, 1026, 1036
HpyCH4IV	ACGT	1 cut(s)	1061
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1027
HpyF3I	CTNAG	7 cut(s)	114, 346, 485, 655, 742, 850, 978
HpySE526I	ACGT	1 cut(s)	1061
Hsp92II	CATG	4 cut(s)	588, 834, 840, 916
HspAI	GCGC	2 cut(s)	500, 807
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
Lsp1109I	GCAGC	2 cut(s)	375, 796
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	264, 480, 555
MaeII	ACGT	1 cut(s)	1061
MaeIII	GTNAC	4 cut(s)	61, 349, 459, 769
MalI	GATC	7 cut(s)	33, 224, 241, 551, 706, 818, 1052
MboI	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
MboII	GAAGA	2 cut(s)	140, 330
MflI	RGATCY	4 cut(s)	31, 549, 704, 1050
MhlI	GDGCHC	2 cut(s)	150, 347
MluCI	AATT	8 cut(s)	23, 180, 245, 357, 608, 903, 957, 988
MlyI	GAGTC	3 cut(s)	23, 394, 842
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	109, 281, 403, 973
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	8 cut(s)	57, 152, 273, 425, 525, 873, 906, 960
MslI	CAYNNNNRTG	3 cut(s)	153, 311, 835
MspA1I	CMGCKG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	1027
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
NlaIII	CATG	4 cut(s)	588, 834, 840, 916
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	349, 769
NsiI	ATGCAT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	928
PfeI	GAWTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	199, 365, 811
PleI	GAGTC	3 cut(s)	22, 394, 842
PpsI	GAGTC	3 cut(s)	22, 394, 842
Ppu21I	YACGTR	1 cut(s)	1062
PshAI	GACNNNNGTC	1 cut(s)	404
PshBI	ATTAAT	1 cut(s)	906
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	4 cut(s)	31, 549, 704, 1050
RsaI	GTAC	2 cut(s)	625, 835
RsaNI	GTAC	2 cut(s)	624, 834
RseI	CAYNNNNRTG	3 cut(s)	153, 311, 835
SaqAI	TTAA	8 cut(s)	57, 152, 273, 425, 525, 873, 906, 960
SatI	GCNGC	3 cut(s)	198, 364, 810
Sau3AI	GATC	7 cut(s)	31, 222, 239, 549, 704, 816, 1050
SchI	GAGTC	3 cut(s)	23, 394, 842
SduI	GDGCHC	2 cut(s)	150, 347
SetI	ASST	8 cut(s)	147, 269, 292, 466, 600, 829, 1023, 1064
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	810
SmiMI	CAYNNNNRTG	3 cut(s)	153, 311, 835
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	8 cut(s)	23, 180, 245, 357, 608, 903, 957, 988
SsiI	CCGC	5 cut(s)	197, 254, 366, 590, 917
SspI	AATATT	2 cut(s)	641, 649
SspMI	CTAG	3 cut(s)	264, 480, 555
StyI	CCWWGG	1 cut(s)	877
TaaI	ACNGT	4 cut(s)	324, 937, 1026, 1036
TaiI	ACGT	1 cut(s)	1064
TaqI	TCGA	2 cut(s)	408, 965
TasI	AATT	8 cut(s)	23, 180, 245, 357, 608, 903, 957, 988
TatI	WGTACW	2 cut(s)	623, 833
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	8 cut(s)	57, 152, 273, 425, 525, 873, 906, 960
Tru9I	TTAA	8 cut(s)	57, 152, 273, 425, 525, 873, 906, 960
TscAI	CASTG	3 cut(s)	354, 517, 774
TseFI	GTSAC	2 cut(s)	349, 769
TseI	GCWGC	2 cut(s)	363, 809
Tsp45I	GTSAC	2 cut(s)	349, 769
TspDTI	ATGAA	4 cut(s)	348, 573, 677, 819
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	3 cut(s)	354, 517, 774
Vha464I	CTTAAG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	3 cut(s)	23, 245, 988
XbaI	TCTAGA	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	3 cut(s)	264, 480, 555
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.