Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Reverse (-)

49692744 .. 49696554

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGCAGATGCACTCAAGGATATTCAACAAGTCTTTGATGAAGAAAACAGAGAGACCACAGTTGAGGTTCTCAAGGGTCCAAATGCACCATTCTTAATGTCTGGTTGCAAAATAGCTGATGGAGTCGGTACCATGCTGGTAATGAGTGTTGGAAGCAATACAGGATGGGGATTGTTGATGGCAAGTATCTCTGAGGATACCGGTGAAGAAGCTCCTTTACAGGTGCACTTAAATGGACTTGCAACTTTTATAGGCATAATTGGGCTTTCAGTAGCTGCTTTGGTGCTGATTATTTTGTTGATCAAATACTCTGCGAGATTAGAATTTGATACGGACAAAACTAGCTTTCTTAAGGCTGTATATGGAGGTGTAAAGATTTTCACCATTGCTGTAAGTGAAGTTTCTGGATGCTTGTTAGGTTTTATGTTTTATGTTGGCCTCTTTGACAATTTTAGAATCATTCAAGTTACCATTCTAGTTGTTGCAGTGCCTGAATGCCTACCTTTGGTCATTACCTTGAGGGAAGTAGCAGCTACCACTTTTTTCTTAGGTTGTAATAATACTGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

202

Amino Acids

21.85

Weight (kDa)

4.94

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflII	CTTAAG	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	17, 62, 500
AluBI	AGCT	5 cut(s)	152, 248, 311, 381, 569
AluI	AGCT	5 cut(s)	152, 248, 311, 381, 569
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	260
AlwNI	CAGNNNCTG	2 cut(s)	311, 527
AoxI	GGCC	1 cut(s)	472
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	311, 566
ApoI	RAATTY	1 cut(s)	359
AsiGI	ACCGGT	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	251, 409
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	298, 578
BccI	CCATC	3 cut(s)	149, 195, 208
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	378, 512
BfrI	CTTAAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	312, 567
BlsI	GCNGC	2 cut(s)	313, 568
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	114, 166
BmsI	GCATC	2 cut(s)	34, 434
BpuEI	CTTGAG	3 cut(s)	35, 92, 574
BsaI	GGTCTC	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	420
BseGI	GGATG	2 cut(s)	206, 449
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	298, 578
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	114, 166
BspT107I	GGYRCC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	228, 583
BstF5I	GGATG	2 cut(s)	206, 449
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	298, 578
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	206, 449
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
CaiI	CAGNNNCTG	2 cut(s)	311, 527
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	8 cut(s)	152, 248, 301, 311, 381, 392, 474, 569
CviKI_1	RGCY	8 cut(s)	152, 248, 301, 311, 381, 392, 474, 569
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	228, 583
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	113
FaeI	CATG	1 cut(s)	172
FaiI	YATR	7 cut(s)	170, 287, 293, 397, 399, 461, 468
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	312, 567
FokI	GGATG	2 cut(s)	213, 456
Fsp4HI	GCNGC	2 cut(s)	312, 567
FspBI	CTAG	2 cut(s)	378, 512
GluI	GCNGC	2 cut(s)	312, 567
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	2 cut(s)	159, 492
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	251, 409
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	41, 47, 122, 144, 262, 278, 521
HpyF3I	CTNAG	2 cut(s)	228, 583
Hsp92II	CATG	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	123, 158, 183, 242, 250, 426, 540, 585
Lsp1109I	GCAGC	2 cut(s)	298, 578
LweI	GCATC	2 cut(s)	34, 434
MaeI	CTAG	2 cut(s)	378, 512
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	2 cut(s)	89, 254
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	3 cut(s)	294, 359, 484
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	5 cut(s)	94, 223, 395, 485, 549
MseI	TTAA	4 cut(s)	27, 131, 266, 387
MslI	CAYNNNNRTG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	536
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	114, 166
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	492
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	313, 568
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	114, 166
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	311, 527
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	27, 131, 266, 387
SatI	GCNGC	2 cut(s)	312, 567
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	34, 434
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	4 cut(s)	50, 107, 386, 553
SmoI	CTYRAG	4 cut(s)	50, 107, 386, 553
Sse9I	AATT	3 cut(s)	294, 359, 484
SspMI	CTAG	2 cut(s)	378, 512
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	3 cut(s)	294, 359, 484
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	4 cut(s)	27, 131, 266, 387
Tru9I	TTAA	4 cut(s)	27, 131, 266, 387
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	2 cut(s)	311, 566
TspDTI	ATGAA	2 cut(s)	17, 90
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	386
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	2 cut(s)	378, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.