Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Reverse (-)

38230549 .. 38234611

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTTTGCAGATGCACTCAAGGATATTCAACAAGTCTTTGATGAAGAAAACAGAGAGACCACAGTTGAGGTTCTCAAGGGTCCAAATGCACCATTCTTAATGTCTGGTTGCAAAATAGCTGATGGAGTCGGTACCATGCTGGTAACGAGTGTTGGAAGCAATACAGGATGGGGATTGTTGATGGCAAGTATCTCTGAGGATACCGGTGAAGAAGCTCCTTTACAGGTGCACTTAAATGGACTTGCAACTTTTATAGGCATAATTGGATGCTTGTTAGGTTTGATGTTTTATGTTGGCCTCTTTGACAATTTTAGAATCATTCAGGTTACCATTCTAGTTGTTGCAGTGCCTGAATGCCTACCTTTGGTCATTACCTTGACGGAAGTAGCAGCTACCACTTTTTTCTTAGGTTGTAATAATACTGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

154

Amino Acids

16.59

Weight (kDa)

4.59

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	17, 62
AluBI	AGCT	3 cut(s)	152, 248, 425
AluI	AGCT	3 cut(s)	152, 248, 425
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	328
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	3 cut(s)	149, 195, 208
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	114, 166
BmsI	GCATC	2 cut(s)	34, 290
BpuEI	CTTGAG	2 cut(s)	35, 92
BsaI	GGTCTC	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	460
BseGI	GGATG	2 cut(s)	206, 305
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	114, 166
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	228, 439
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	206, 305
BstMAI	GTCTC	1 cut(s)	83
BstPI	GGTNACC	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	206, 305
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	4 cut(s)	152, 248, 330, 425
CviKI_1	RGCY	4 cut(s)	152, 248, 330, 425
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	228, 439
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	170, 287, 293, 324
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	213, 312
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	2 cut(s)	159, 348
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	41, 47, 122, 144, 262, 278, 377
HpyF3I	CTNAG	2 cut(s)	228, 439
Hsp92II	CATG	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	123, 158, 183, 242, 250, 341, 396, 441
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	34, 290
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	175, 358
MboII	GAAGA	2 cut(s)	89, 254
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	294, 340
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	94, 223, 341
MseI	TTAA	3 cut(s)	27, 131, 266
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	392
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	114, 166
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	114, 166
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	27, 131, 266
SatI	GCNGC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	34, 290
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	50, 107
SmoI	CTYRAG	2 cut(s)	50, 107
Sse9I	AATT	2 cut(s)	294, 340
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	2 cut(s)	294, 340
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	27, 131, 266
Tru9I	TTAA	3 cut(s)	27, 131, 266
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	17, 90
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	384
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	113
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.