Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017763

Physical Location & Seq

Genomic Coordinates Reverse (-)

30254810 .. 30256552

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCTGGTTGCAAAATAGCTGATGGAGTCGGTACCATGCTGGTAACGAGTGTTGGAAGCAATACAGGATGGGGATTGTTGATGGCAAGTATCTCTGAGGATACCGGTGAAGAAGCTCCTTTACAGGTGCACTTAATTGGACTTGCAACTTTTATAGGCATAATTGGGCTTTCAGTAGCTGCTTTGGTGCTGATTATTTTGTTGATCAAATACTCTGCGAGATTAGAATTTGATGCGGACAAAACTAGCTTTCTTAAGGCTGTATATGGAGGTGTAAAGATTTTCACCATTGCTGTAAGTGAAGTTTCTGGATGCTTGTTAGGTTTGATGTTTTATGTTGGCCTCTTTGACAATTTTAGAATCATTCAGGTTACCATTCTAGTTGTTGCAGTGCCTGAATGCCTACCTTTGGTCATTACCTTGACGGAAGTAGCAGCTACCACTTTTTTCTTAGGTTGTAATAATACTGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

158

Amino Acids

16.64

Weight (kDa)

4.78

Isoelectric Point (pI)

26.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017763)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20660
rosa_chinensis	RchiOBHm_Chr2g0124791 RchiOBHm_Chr2g0133041
rosa_laevigata	RLG00000014296
rosa_roxburghii	Rroxscaffold_1G00004640 Rroxscaffold_6G00396430
rosa_samantha	Rh5BG519700 Rh5CG543700 Rh7BG392600 Rh7DG118800 Rh7DG442200
rosa_wichuraiana	Rw7G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	104
AluBI	AGCT	5 cut(s)	20, 116, 179, 249, 437
AluI	AGCT	5 cut(s)	20, 116, 179, 249, 437
Alw21I	GWGCWC	1 cut(s)	132
Alw44I	GTGCAC	1 cut(s)	128
AlwNI	CAGNNNCTG	2 cut(s)	179, 395
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	179, 434
ApoI	RAATTY	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	119, 277
BaeGI	GKGCMC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	166, 446
BccI	CCATC	3 cut(s)	17, 63, 76
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	2 cut(s)	246, 380
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	180, 435
BlsI	GCNGC	2 cut(s)	181, 436
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	223, 302
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	74, 317
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	166, 446
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	96, 451
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	74, 317
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	166, 446
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	74, 317
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
CaiI	CAGNNNCTG	2 cut(s)	179, 395
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	33
CspAI	ACCGGT	1 cut(s)	104
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	8 cut(s)	20, 116, 169, 179, 249, 260, 342, 437
CviKI_1	RGCY	8 cut(s)	20, 116, 169, 179, 249, 260, 342, 437
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	96, 451
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	38, 155, 161, 265, 267, 336
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	180, 435
FokI	GGATG	2 cut(s)	81, 324
Fsp4HI	GCNGC	2 cut(s)	180, 435
FspBI	CTAG	2 cut(s)	246, 380
GluI	GCNGC	2 cut(s)	180, 435
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	2 cut(s)	27, 360
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	119, 277
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	12, 130, 146, 389
HpyF3I	CTNAG	2 cut(s)	96, 451
Hsp92II	CATG	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	26, 51, 110, 118, 294, 353, 408, 453
Lsp1109I	GCAGC	2 cut(s)	166, 446
LweI	GCATC	2 cut(s)	223, 302
MaeI	CTAG	2 cut(s)	246, 380
MaeIII	GTNAC	2 cut(s)	43, 370
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	135, 162, 227, 352
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	91, 263, 353
MseI	TTAA	2 cut(s)	134, 255
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	181, 436
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	179, 395
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	134, 255
SatI	GCNGC	2 cut(s)	180, 435
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	223, 302
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	135, 162, 227, 352
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	246, 380
TasI	AATT	4 cut(s)	135, 162, 227, 352
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	134, 255
Tru9I	TTAA	2 cut(s)	134, 255
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	179, 434
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	396
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	227
XspI	CTAG	2 cut(s)	246, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.