pycom16g20830

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004332
Physical Location & Seq
Forward (+)
18885226 .. 18888689
3464 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGTCAGAAAGTTCTGCACCTAATCTCGTTTATAAACGGAGGAAGTTACAAGGAAACCGTGTCACCGTGTTTCCAGGAGAGCGAGAAAACACTATAAGTGGTGATTTTTTTTCTTTTCTAAATTCTGAAGCTTCTACAGTTGCTGCTAAGGAAGAACTTGTATCTCAATTACACCATGAAACTGAAGCTACTCGAGCTCATTCTGTAGCTCCTCGTTTATGCAAGAGAGTTGGTCATGTTTTAAATTCAGAATCTTGTAATGGATGTTCTGCTGGTGAGGAATTAATTTTCAATGAAGCACCTAAAAATAACGTGCAAAAACTTTTAGAGGTAAGCAGCGTGAATGATAGTTGCTCATCATCAAAGTCAAATATGGAGCATGTTTCAACTTCCGCAAAGACTGAAGTAGATGAAACAGCTGAGTGCTCCTCTTCTAGTGCAATAGTTATGGAGGCTGTGGGAGACCTGTCTGAAAGGGATCTATGCATCTCTATTCTTAGAAGCCATGGACTGCTTGGGGATTCTCAGGTTACCATGATCGGTGGTTCTGCTGAAGACACTGACACCATTAGCGGTGAAATCCATCGCCGGTCATGCAAAATTTGTAGTCGTTCTGGAACCACTTTGAAAATGCTAATTTGTGATAATTGTGAAGAGGCATTTCACATGTCATGCTGCCACTCCCGTATGAAGAAACCACCTATTGATGAATGGTTCTGTCATTCTTGTTTGAAAAAGAAACATAAGATTTTACAGGAGAAAGTGACATCGCCCAATATCACGAGTGTCATGAGTAGGGAAGCATCATCCAAGGGCCAAATGAATCCCATAATCTTAATGTTGAGAGACATTGAGCCGTATACAACTAGTGTTCGGGTTGGTAAAGGGTTTCAAGCGGAAGTTCCTGAGTGGTCTGGCCCAACAAATGGGGTAAACGGTGATATCAGTGGCATTGGTGAACCTTTGGAACTAGATTCGTCGGAGTATGCTAGATTGCATGGGCTGAACTGCAATAAACCTTCTAGACATAGCTCTATAGGTAATTGGCTTCAATGTCGAGAAGTTGTAGATCGCACAAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTAATGACTGGGAGTGCTTCTGCTCTATCCTTTGGGATCCAAGCCATGCTGATTGTAATGTGCCTCAGGAACTGGAAACAGATCAAGTTCTAAAGCAACTGAAGTATATTGAGACGCTGAGGCCGCGGTTATCTGCTAAACAGCATACTTTGGATGGAACCAAGAGTGCCGGTGAATTGAAAAAGCCCATAGTAGGTACAAAAAGTATACAAACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0070063
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

450

Amino Acids

49.55

Weight (kDa)

6.23

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 199 - 243 1.9e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 2 cut(s) 860, 1336
AccII CGCG 1 cut(s) 1255
AciI CCGC 5 cut(s) 393, 573, 896, 1253, 1255
AclWI GGATC 3 cut(s) 486, 1160, 1173
AcsI RAATTY 3 cut(s) 121, 244, 600
AcuI CTGAAG 5 cut(s) 147, 204, 423, 573, 1250
AfaI GTAC 1 cut(s) 1327
AfiI CCNNNNNNNGG 2 cut(s) 926, 1322
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 8 cut(s) 292, 387, 628, 733, 893, 1052, 1121, 1309
AhlI ACTAGT 1 cut(s) 866
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 6 cut(s) 131, 188, 197, 209, 419, 1032
AluI AGCT 6 cut(s) 131, 188, 197, 209, 419, 1032
Alw21I GWGCWC 2 cut(s) 199, 428
Alw26I GTCTC 3 cut(s) 456, 840, 1235
AlwI GGATC 3 cut(s) 486, 1160, 1173
AlwNI CAGNNNCTG 2 cut(s) 143, 1201
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 3 cut(s) 814, 916, 1250
ApeKI GCWGC 3 cut(s) 143, 336, 675
ApoI RAATTY 3 cut(s) 121, 244, 600
AseI ATTAAT 1 cut(s) 284
AspLEI GCGC 1 cut(s) 1104
AspS9I GGNCC 2 cut(s) 814, 917
AsuHPI GGTGA 7 cut(s) 55, 113, 287, 587, 950, 968, 1313
AvaI CYCGRG 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 1194
BamHI GGATCC 1 cut(s) 1165
BanII GRGCYC 2 cut(s) 199, 1111
BauI CACGAG 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 199, 428
BbvCI CCTCAGC 1 cut(s) 1247
BbvI GCAGC 3 cut(s) 130, 348, 662
BccI CCATC 2 cut(s) 591, 1277
BceAI ACGGC 1 cut(s) 841
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 456, 840, 1235
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 5 cut(s) 435, 867, 971, 990, 1023
BfmI CTRYAG 3 cut(s) 135, 204, 1035
BisI GCNGC 4 cut(s) 144, 337, 676, 1253
BlsI GCNGC 4 cut(s) 145, 338, 677, 1254
Bme1390I CCNGG 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 814, 917
BmiI GGNNCC 4 cut(s) 619, 1110, 1167, 1288
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 2 cut(s) 495, 812
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 413, 445
Bpu10I CCTNAGC 2 cut(s) 147, 1247
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 505, 810, 1253
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 1322
Bse118I RCCGGY 2 cut(s) 588, 1298
Bse1I ACTGG 2 cut(s) 1142, 1206
Bse21I CCTNAGG 1 cut(s) 1194
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 505, 810, 1253
BseGI GGATG 3 cut(s) 269, 806, 1288
BseLI CCNNNNNNNGG 2 cut(s) 926, 1322
BseMII CTCAG 5 cut(s) 411, 539, 897, 1208, 1238
BseNI ACTGG 2 cut(s) 1142, 1206
BseRI GAGGAG 3 cut(s) 201, 418, 1101
BseXI GCAGC 3 cut(s) 130, 348, 662
Bsh1236I CGCG 1 cut(s) 1255
BshFI GGCC 3 cut(s) 816, 918, 1252
BsiHKAI GWGCWC 2 cut(s) 199, 428
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 589, 1299
BslI CCNNNNNNNGG 2 cut(s) 926, 1322
BsmAI GTCTC 3 cut(s) 456, 840, 1235
BsmBI CGTCTC 1 cut(s) 1235
BsnI GGCC 3 cut(s) 816, 918, 1252
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 199, 428, 1111
Bsp143I GATC 5 cut(s) 478, 537, 1069, 1165, 1210
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 5 cut(s) 393, 573, 896, 1253, 1255
BspANI GGCC 3 cut(s) 816, 918, 1252
BspCNI CTCAG 5 cut(s) 412, 538, 898, 1207, 1239
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 4 cut(s) 619, 1110, 1167, 1288
BspPI GGATC 3 cut(s) 486, 1160, 1173
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 2 cut(s) 588, 1298
BsrI ACTGG 2 cut(s) 1142, 1206
BssAI RCCGGY 2 cut(s) 588, 1298
BssECI CCNNGG 3 cut(s) 505, 810, 1253
BssMI GATC 5 cut(s) 478, 537, 1069, 1165, 1210
BssNAI GTATAC 2 cut(s) 861, 1337
BssSI CACGAG 1 cut(s) 781
BssT1I CCWWGG 2 cut(s) 505, 810
Bst1107I GTATAC 2 cut(s) 861, 1337
Bst2BI CACGAG 1 cut(s) 781
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 59, 67, 139, 938
Bst6I CTCTTC 2 cut(s) 436, 648
BstDEI CTNAG 7 cut(s) 147, 420, 497, 525, 906, 1194, 1247
BstDSI CCRYGG 2 cut(s) 505, 1253
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 3 cut(s) 269, 806, 1288
BstFNI CGCG 1 cut(s) 1255
BstHHI GCGC 1 cut(s) 1104
BstKTI GATC 5 cut(s) 481, 540, 1072, 1168, 1213
BstMAI GTCTC 3 cut(s) 456, 840, 1235
BstMBI GATC 5 cut(s) 478, 537, 1069, 1165, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 194, 594, 1252
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 2 cut(s) 383, 670
BstPI GGTNACC 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 3 cut(s) 135, 204, 1035
BstUI CGCG 1 cut(s) 1255
BstV1I GCAGC 3 cut(s) 130, 348, 662
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 2 cut(s) 478, 1165
BstYI RGATCY 2 cut(s) 478, 1165
BstZ17I GTATAC 2 cut(s) 861, 1337
Bsu36I CCTNAGG 1 cut(s) 1194
BsuRI GGCC 3 cut(s) 816, 918, 1252
BtgI CCRYGG 2 cut(s) 505, 1253
BtgZI GCGATG 2 cut(s) 569, 753
BtsCI GGATG 3 cut(s) 269, 806, 1288
BtsIMutI CAGTG 2 cut(s) 558, 952
CaiI CAGNNNCTG 2 cut(s) 143, 1201
CciI TCATGA 1 cut(s) 789
CfoI GCGC 1 cut(s) 1104
Cfr10I RCCGGY 2 cut(s) 588, 1298
Cfr13I GGNCC 2 cut(s) 814, 917
Cfr42I CCGCGG 1 cut(s) 1256
CseI GACGC 1 cut(s) 1252
Csp6I GTAC 1 cut(s) 1326
CviQI GTAC 1 cut(s) 1326
DdeI CTNAG 7 cut(s) 147, 420, 497, 525, 906, 1194, 1247
DpnI GATC 5 cut(s) 480, 539, 1071, 1167, 1212
DpnII GATC 5 cut(s) 478, 537, 1069, 1165, 1210
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 436, 648
EarI CTCTTC 2 cut(s) 436, 648
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 505, 810
Eco24I GRGCYC 2 cut(s) 199, 1111
Eco31I GGTCTC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 943
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 5 cut(s) 147, 204, 423, 573, 1250
Eco81I CCTNAGG 1 cut(s) 1194
Eco88I CYCGRG 1 cut(s) 192
Eco91I GGTNACC 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 505, 810
EcoT22I ATGCAT 1 cut(s) 488
EcoT38I GRGCYC 2 cut(s) 199, 1111
ErhI CCWWGG 2 cut(s) 505, 810
Esp3I CGTCTC 1 cut(s) 1235
FblI GTMKAC 2 cut(s) 860, 1336
Fnu4HI GCNGC 4 cut(s) 144, 337, 676, 1253
FokI GGATG 3 cut(s) 276, 793, 1295
FriOI GRGCYC 2 cut(s) 199, 1111
Fsp4HI GCNGC 4 cut(s) 144, 337, 676, 1253
FspBI CTAG 5 cut(s) 435, 867, 971, 990, 1023
GlaI GCGC 1 cut(s) 1103
GluI GCNGC 4 cut(s) 144, 337, 676, 1253
HaeIII GGCC 3 cut(s) 816, 918, 1252
HapII CCGG 2 cut(s) 589, 1299
HgaI GACGC 1 cut(s) 1252
HhaI GCGC 1 cut(s) 1104
Hin6I GCGC 1 cut(s) 1102
HinP1I GCGC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 4 cut(s) 251, 521, 823, 974
HpaII CCGG 2 cut(s) 589, 1299
HphI GGTGA 7 cut(s) 55, 113, 287, 587, 950, 968, 1313
Hpy166II GTNNAC 4 cut(s) 861, 934, 959, 1337
Hpy188I TCNGA 5 cut(s) 7, 127, 250, 472, 982
Hpy188III TCNNGA 7 cut(s) 615, 781, 790, 905, 1023, 1058, 1196
Hpy8I GTNNAC 4 cut(s) 861, 934, 959, 1337
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 1 cut(s) 1029
HpyCH4III ACNGT 4 cut(s) 59, 67, 139, 938
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 8 cut(s) 17, 222, 316, 440, 486, 597, 997, 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 594, 1252
HpyF3I CTNAG 7 cut(s) 147, 420, 497, 525, 906, 1194, 1247
HpySE526I ACGT 1 cut(s) 312
HspAI GCGC 1 cut(s) 1102
KspI CCGCGG 1 cut(s) 1256
Kzo9I GATC 5 cut(s) 478, 537, 1069, 1165, 1210
LmnI GCTCC 4 cut(s) 214, 376, 431, 1114
Lsp1109I GCAGC 3 cut(s) 130, 348, 662
LweI GCATC 2 cut(s) 495, 812
MaeI CTAG 5 cut(s) 435, 867, 971, 990, 1023
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 4 cut(s) 45, 61, 529, 763
MalI GATC 5 cut(s) 480, 539, 1071, 1167, 1212
MboI GATC 5 cut(s) 478, 537, 1069, 1165, 1210
MboII GAAGA 5 cut(s) 164, 423, 566, 665, 703
MflI RGATCY 2 cut(s) 478, 1165
MhlI GDGCHC 3 cut(s) 199, 428, 1111
MmeI TCCRAC 1 cut(s) 960
Mph1103I ATGCAT 1 cut(s) 488
MseI TTAA 3 cut(s) 242, 284, 836
MspA1I CMGCKG 2 cut(s) 419, 1255
MspI CCGG 2 cut(s) 589, 1299
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 3 cut(s) 194, 594, 1252
NcoI CCATGG 1 cut(s) 505
NdeII GATC 5 cut(s) 478, 537, 1069, 1165, 1210
NlaIV GGNNCC 4 cut(s) 619, 1110, 1167, 1288
NmuCI GTSAC 2 cut(s) 61, 763
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 2 cut(s) 383, 670
PaeR7I CTCGAG 1 cut(s) 192
PagI TCATGA 1 cut(s) 789
PciI ACATGT 1 cut(s) 666
PfeI GAWTC 4 cut(s) 251, 521, 823, 974
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 4 cut(s) 145, 338, 677, 1254
PscI ACATGT 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 284
PsiI TTATAA 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 619, 1110, 1167, 1288
PspPI GGNCC 2 cut(s) 814, 917
PspXI VCTCGAGB 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 250, 282
PstNI CAGNNNCTG 2 cut(s) 143, 1201
PsuI RGATCY 2 cut(s) 478, 1165
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 1 cut(s) 1327
RsaNI GTAC 1 cut(s) 1326
SacI GAGCTC 1 cut(s) 199
SacII CCGCGG 1 cut(s) 1256
SaqAI TTAA 3 cut(s) 242, 284, 836
SatI GCNGC 4 cut(s) 144, 337, 676, 1253
Sau3AI GATC 5 cut(s) 478, 537, 1069, 1165, 1210
Sau96I GGNCC 2 cut(s) 814, 917
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 3 cut(s) 199, 428, 1111
SfaNI GCATC 2 cut(s) 495, 812
SfcI CTRYAG 3 cut(s) 135, 204, 1035
Sfr274I CTCGAG 1 cut(s) 192
Sfr303I CCGCGG 1 cut(s) 1256
SgrBI CCGCGG 1 cut(s) 1256
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 866
SsiI CCGC 5 cut(s) 393, 573, 896, 1253, 1255
SspMI CTAG 5 cut(s) 435, 867, 971, 990, 1023
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 2 cut(s) 505, 810
TaaI ACNGT 4 cut(s) 59, 67, 139, 938
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 193, 1057
TauI GCSGC 1 cut(s) 1255
TfiI GAWTC 4 cut(s) 251, 521, 823, 974
Tru1I TTAA 3 cut(s) 242, 284, 836
Tru9I TTAA 3 cut(s) 242, 284, 836
TscAI CASTG 2 cut(s) 565, 952
TseFI GTSAC 2 cut(s) 61, 763
TseI GCWGC 3 cut(s) 143, 336, 675
Tsp45I GTSAC 2 cut(s) 61, 763
TspDTI ATGAA 6 cut(s) 192, 309, 426, 704, 723, 836
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 565, 952
Van91I CCANNNNNTGG 1 cut(s) 926
VspI ATTAAT 1 cut(s) 284
XapI RAATTY 3 cut(s) 121, 244, 600
XbaI TCTAGA 1 cut(s) 1022
XceI RCATGY 2 cut(s) 383, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 192
XmiI GTMKAC 2 cut(s) 860, 1336
XspI CTAG 5 cut(s) 435, 867, 971, 990, 1023
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.