pycom16g24140

RNA-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
25398870 .. 25402105
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1542 bp
ATGGGAGGACAAAAAGGGTTTCGAATTCCTTCAAACCAAAATACAATGGGTAGGAAGAAACCCAAGGAGCCAGAAAGCGACGCCGTTTCAGCAGCTCAGTCCGACGTCTTCAAGACCCTGTTCGGCGACGCCGTCAGCCACGACGCCGCCACTGCCATCTTCTCTGACAGCAACCCCTTCAGGAGGACGAACAGGGAACCCGACCAAGGGTTTGTTGCCCCTTCGGCTGAACCTGCTGAAAGCATCAATTATGTCGAGCCTGAAAACAATGATGATGACGGTGACGGTGACGTGAAGAAGCGGAAGAGGAGGAGCAAAGAGAAAGCGGCTTCCGGTTCGCTGAACGAAGAAGCTTCAGAGGGTCCTGTGGAGTTGGAGGGCAAAAAAAGGAAGAAAAAGAAGCTGCCGGAAACTCCCGATTCTGAAAACCCTAATTTGGGTTCTGAGTTTGAAGGGGTGTCAAGACGGGAAAGTGATGAAGCCTCGGAGAAAGGGAATGCCCCGGCGCAGAAGAAGGATGGGAAGAAGAGGAAAAGGGATGAAATTGAGAGGGAATATGAGGTGAAGAAGTATGGGGTGAAGGAGGGCGAGGAGGATGGGGACAAGGAGGAGAAGAGGACTGTTGGGGAGAAGAGGAAGACAGTGGATAACCCAGCTGATATGTTGGTTTCGACCGAAGGTTTTGATGACGAGAGCAAGCTATTGAGGACTGTTTTTGTTGGAAATTTGCCCTTGAAGGTCAAGAAGAAGGCTTTGATGAAGGAGTTCACTAAGTTTGGAGAGGTAGAGTCAGTGAGGATTCGCTCCGTGCCAATCTTGGATACGAAAAGACCCAGAAAGGGAGCAATACACACGAAGCAAATCCACGATAAAGCTGACAGTGTTAATGCCTACGTTGTTTTCAAAATGGAGGAATCGGCACAGACTTCCTTGTCCCATAACATGGCTGTGGATGAGGAAGTTTATCAGCTGTTTTGCGGTATCAACAATCTTGGTTCCAGTGTTGAAGCTATTCGCATAATCAGGGATCCTAACTATGGTATCGGAAAGGGCATTGCTTATGTTTTGTTTAGAACAAGGGAAGCTGCAAATTTGGTTGTTAAGAGGCGAAACTTGAAGCTTGGGGATCGGGAGCTCAGGCTGTCTCGTGCAAAACCAGAGTCAACCCCAACGAAGAGAAAGAACCCCTCATCTGCACCGGAAGCTAAGTCTTCAGCCAAAAAGCGAGCTGTGGACTCAAGGAGTCCAGATTTTAACAAGTCGAGTTCAAAAGCATCTTACCAGGGCCTGCGTGCTGGTAAGCCTGGTGTCCAAAAGAAGTTTAATGCAAAAGGCAGTAGACCGGATAAGTTTGAATCAAGATTCCCTAGTGGAGTGAAGCCGAAAGAGCGTAAAGATAAAAGACCTTCTGTTGCTGCGAGAAAGGCTAAAGAAGCACTGAAAGGTGGTGCTGCATCAAAACAAACAGGTACAAAGCGTAAGCTGGATAGCCGGAGTCCAGATAGCTCCCAGCAGAAAAAGAAATTCAAGAAATTTAGGTAG

Protein Analysis

514

Amino Acids

57.05

Weight (kDa)

9.82

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 931
AatII GACGTC 1 cut(s) 108
Acc36I ACCTGC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 943
AccI GTMKAC 1 cut(s) 1339
AciI CCGC 4 cut(s) 147, 301, 326, 978
AclWI GGATC 3 cut(s) 1022, 1035, 1134
AcsI RAATTY 5 cut(s) 24, 724, 1090, 1523, 1532
AcuI CTGAAG 3 cut(s) 163, 339, 1197
AcyI GRCGYC 4 cut(s) 81, 105, 129, 144
AfaI GTAC 1 cut(s) 1471
AfiI CCNNNNNNNGG 8 cut(s) 183, 206, 207, 436, 437, 839, 943, 1037
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 1281, 1303
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 1 cut(s) 1149
AlwI GGATC 3 cut(s) 1022, 1035, 1134
AlwNI CAGNNNCTG 1 cut(s) 1288
AoxI GGCC 1 cut(s) 1285
ApeKI GCWGC 5 cut(s) 92, 403, 1085, 1415, 1451
ApoI RAATTY 5 cut(s) 24, 724, 1090, 1523, 1532
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 1145, 1177
Asp700I GAANNNNTTC 3 cut(s) 28, 764, 1011
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 362, 1285
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 4 cut(s) 293, 299, 574, 589
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 1024, 1057
BamHI GGATCC 1 cut(s) 1027
BanII GRGCYC 1 cut(s) 1137
BauI CACGAG 1 cut(s) 1146
BbsI GAAGAC 3 cut(s) 100, 644, 1203
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 5 cut(s) 104, 390, 1072, 1402, 1438
BccI CCATC 3 cut(s) 164, 512, 590
BceAI ACGGC 2 cut(s) 68, 116
BciT130I CCWGG 2 cut(s) 1283, 1305
BciVI GTATCC 1 cut(s) 814
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 1149
BfaI CTAG 1 cut(s) 1368
BfuAI ACCTGC 1 cut(s) 241
BfuI GTATCC 1 cut(s) 814
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 7 cut(s) 93, 147, 327, 404, 1086, 1416, 1452
BlsI GCNGC 7 cut(s) 94, 148, 328, 405, 1087, 1417, 1453
Bme1390I CCNGG 3 cut(s) 503, 1283, 1305
Bme18I GGWCC 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 362, 1285
BmiI GGNNCC 5 cut(s) 69, 198, 363, 997, 1029
BmrFI CCNGG 3 cut(s) 503, 1283, 1305
BmsI GCATC 3 cut(s) 252, 1283, 1463
BpiI GAAGAC 3 cut(s) 100, 644, 1203
Bpu10I CCTNAGC 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 1222
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 4 cut(s) 81, 105, 129, 144
BsaJI CCNNGG 5 cut(s) 63, 205, 483, 501, 1282
BsaWI WCCGGW 3 cut(s) 332, 1198, 1342
Bsc4I CCNNNNNNNGG 8 cut(s) 183, 206, 207, 436, 437, 839, 943, 1037
Bse1I ACTGG 1 cut(s) 999
Bse3DI GCAATG 1 cut(s) 1053
BseBI CCWGG 2 cut(s) 1283, 1305
BseDI CCNNGG 5 cut(s) 63, 205, 483, 501, 1282
BseGI GGATG 4 cut(s) 523, 544, 601, 958
BseLI CCNNNNNNNGG 8 cut(s) 183, 206, 207, 436, 437, 839, 943, 1037
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 3 cut(s) 110, 435, 1150
BseNI ACTGG 1 cut(s) 999
BseRI GAGGAG 4 cut(s) 322, 325, 605, 623
BseXI GCAGC 5 cut(s) 104, 390, 1072, 1402, 1438
BseYI CCCAGC 2 cut(s) 652, 1509
BsgI GTGCAG 1 cut(s) 1179
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 1287
BsiEI CGRYCG 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 1137
BsiSI CCGG 6 cut(s) 333, 407, 503, 1199, 1343, 1492
BslFI GGGAC 2 cut(s) 614, 919
BslI CCNNNNNNNGG 8 cut(s) 183, 206, 207, 436, 437, 839, 943, 1037
BsmAI GTCTC 1 cut(s) 1149
BsmFI GGGAC 2 cut(s) 614, 919
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 1287
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 1137
Bsp143I GATC 2 cut(s) 1027, 1126
BspACI CCGC 4 cut(s) 147, 301, 326, 978
BspANI GGCC 1 cut(s) 1287
BspCNI CTCAG 3 cut(s) 109, 436, 1149
BspLI GGNNCC 5 cut(s) 69, 198, 363, 997, 1029
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 3 cut(s) 1022, 1035, 1134
BspT104I TTCGAA 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 1053
BsrI ACTGG 1 cut(s) 999
BssECI CCNNGG 5 cut(s) 63, 205, 483, 501, 1282
BssMI GATC 2 cut(s) 1027, 1126
BssNI GRCGYC 4 cut(s) 81, 105, 129, 144
BssSI CACGAG 1 cut(s) 1146
BssT1I CCWWGG 2 cut(s) 63, 205
Bst2BI CACGAG 1 cut(s) 1146
Bst2UI CCWGG 2 cut(s) 1283, 1305
Bst4CI ACNGT 6 cut(s) 281, 287, 622, 643, 712, 881
Bst6I CTCTTC 5 cut(s) 299, 521, 608, 626, 1169
BstACI GRCGYC 4 cut(s) 81, 105, 129, 144
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 4 cut(s) 698, 1227, 1289, 1293
BstDEI CTNAG 5 cut(s) 96, 444, 771, 1136, 1206
BstENI CCTNNNNNAGG 1 cut(s) 181
BstF5I GGATG 4 cut(s) 523, 544, 601, 958
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 2 cut(s) 1030, 1129
BstMAI GTCTC 1 cut(s) 1149
BstMBI GATC 2 cut(s) 1027, 1126
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 8 cut(s) 89, 152, 224, 233, 1202, 1387, 1424, 1433
BstNI CCWGG 2 cut(s) 1283, 1305
BstSCI CCNGG 3 cut(s) 501, 1281, 1303
BstV1I GCAGC 5 cut(s) 104, 390, 1072, 1402, 1438
BstV2I GAAGAC 3 cut(s) 100, 644, 1203
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 1 cut(s) 1287
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 4 cut(s) 523, 544, 601, 958
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 6 cut(s) 150, 648, 798, 886, 1006, 1436
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 4 cut(s) 698, 1227, 1289, 1293
CaiI CAGNNNCTG 1 cut(s) 1288
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 362, 1285
CseI GACGC 3 cut(s) 89, 137, 152
Csp6I GTAC 1 cut(s) 1470
CviAII CATG 1 cut(s) 943
CviQI GTAC 1 cut(s) 1470
DdeI CTNAG 5 cut(s) 96, 444, 771, 1136, 1206
DpnI GATC 2 cut(s) 1029, 1128
DpnII GATC 2 cut(s) 1027, 1126
DrdI GACNNNNNNGTC 1 cut(s) 931
DseDI GACNNNNNNGTC 1 cut(s) 931
Eam1104I CTCTTC 5 cut(s) 299, 521, 608, 626, 1169
EarI CTCTTC 5 cut(s) 299, 521, 608, 626, 1169
Ecl136II GAGCTC 1 cut(s) 1135
Eco130I CCWWGG 2 cut(s) 63, 205
Eco24I GRGCYC 1 cut(s) 1137
Eco47I GGWCC 1 cut(s) 362
Eco53kI GAGCTC 1 cut(s) 1135
Eco57I CTGAAG 3 cut(s) 163, 339, 1197
EcoICRI GAGCTC 1 cut(s) 1135
EcoNI CCTNNNNNAGG 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 362, 1285
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 1281, 1303
EcoT14I CCWWGG 2 cut(s) 63, 205
EcoT38I GRGCYC 1 cut(s) 1137
ErhI CCWWGG 2 cut(s) 63, 205
FaeI CATG 1 cut(s) 946
FaiI YATR 9 cut(s) 252, 558, 573, 662, 939, 944, 1019, 1038, 1062
FaqI GGGAC 2 cut(s) 614, 919
FatI CATG 1 cut(s) 942
FblI GTMKAC 1 cut(s) 1339
Fnu4HI GCNGC 7 cut(s) 93, 147, 327, 404, 1086, 1416, 1452
FokI GGATG 4 cut(s) 530, 551, 608, 965
FriOI GRGCYC 1 cut(s) 1137
Fsp4HI GCNGC 7 cut(s) 93, 147, 327, 404, 1086, 1416, 1452
FspBI CTAG 1 cut(s) 1368
GlaI GCGC 1 cut(s) 507
GluI GCNGC 7 cut(s) 93, 147, 327, 404, 1086, 1416, 1452
GsaI CCCAGC 2 cut(s) 656, 1513
HaeIII GGCC 1 cut(s) 1287
HapII CCGG 6 cut(s) 333, 407, 503, 1199, 1343, 1492
HgaI GACGC 3 cut(s) 89, 137, 152
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 4 cut(s) 81, 105, 129, 144
Hin1II CATG 1 cut(s) 946
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 2 cut(s) 351, 1118
HpaII CCGG 6 cut(s) 333, 407, 503, 1199, 1343, 1492
HphI GGTGA 4 cut(s) 293, 299, 574, 589
Hpy166II GTNNAC 4 cut(s) 768, 1164, 1234, 1340
Hpy188I TCNGA 7 cut(s) 103, 166, 358, 424, 445, 487, 1046
Hpy8I GTNNAC 4 cut(s) 768, 1164, 1234, 1340
Hpy99I CGWCG 4 cut(s) 83, 107, 131, 146
HpyCH4III ACNGT 6 cut(s) 281, 287, 622, 643, 712, 881
HpyCH4IV ACGT 3 cut(s) 105, 291, 894
HpyCH4V TGCA 5 cut(s) 1088, 1151, 1196, 1328, 1454
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 152, 224, 233, 1202, 1387, 1424, 1433
HpyF3I CTNAG 5 cut(s) 96, 444, 771, 1136, 1206
HpySE526I ACGT 3 cut(s) 105, 291, 894
Hsp92I GRCGYC 4 cut(s) 81, 105, 129, 144
Hsp92II CATG 1 cut(s) 946
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 1027, 1126
LmnI GCTCC 6 cut(s) 67, 312, 809, 842, 1132, 1511
Lsp1109I GCAGC 5 cut(s) 104, 390, 1072, 1402, 1438
LweI GCATC 3 cut(s) 252, 1283, 1463
MaeI CTAG 1 cut(s) 1368
MaeII ACGT 3 cut(s) 105, 291, 894
MaeIII GTNAC 2 cut(s) 281, 287
MalI GATC 2 cut(s) 1029, 1128
MboI GATC 2 cut(s) 1027, 1126
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 1 cut(s) 1137
MluCI AATT 8 cut(s) 24, 247, 433, 543, 724, 1090, 1523, 1532
MlyI GAGTC 5 cut(s) 797, 1169, 1229, 1252, 1504
MmeI TCCRAC 3 cut(s) 126, 354, 700
MroXI GAANNNNTTC 3 cut(s) 28, 764, 1011
MseI TTAA 4 cut(s) 885, 1101, 1254, 1323
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 2 cut(s) 656, 970
MspI CCGG 6 cut(s) 333, 407, 503, 1199, 1343, 1492
MspR9I CCNGG 3 cut(s) 503, 1283, 1305
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 2 cut(s) 1283, 1305
MwoI GCNNNNNNNGC 8 cut(s) 89, 152, 224, 233, 1202, 1387, 1424, 1433
NciI CCSGG 1 cut(s) 503
NdeII GATC 2 cut(s) 1027, 1126
NlaIII CATG 1 cut(s) 946
NlaIV GGNNCC 5 cut(s) 69, 198, 363, 997, 1029
NmuCI GTSAC 2 cut(s) 281, 287
NspV TTCGAA 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 502
PdmI GAANNNNTTC 3 cut(s) 28, 764, 1011
PfeI GAWTC 5 cut(s) 419, 799, 914, 1355, 1362
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 943
PkrI GCNGC 7 cut(s) 94, 148, 328, 405, 1087, 1417, 1453
PleI GAGTC 5 cut(s) 796, 1168, 1229, 1251, 1503
PpsI GAGTC 5 cut(s) 796, 1168, 1229, 1251, 1503
PpuMI RGGWCCY 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 1137
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 1281, 1303
PspFI CCCAGC 2 cut(s) 652, 1509
PspGI CCWGG 2 cut(s) 1281, 1303
PspN4I GGNNCC 5 cut(s) 69, 198, 363, 997, 1029
PspPI GGNCC 2 cut(s) 362, 1285
PspPPI RGGWCCY 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 1288
PsuI RGATCY 1 cut(s) 1027
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 656, 970
RsaI GTAC 1 cut(s) 1471
RsaNI GTAC 1 cut(s) 1470
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 885, 1101, 1254, 1323
SatI GCNGC 7 cut(s) 93, 147, 327, 404, 1086, 1416, 1452
Sau3AI GATC 2 cut(s) 1027, 1126
Sau96I GGNCC 2 cut(s) 362, 1285
SchI GAGTC 5 cut(s) 797, 1169, 1229, 1252, 1504
ScrFI CCNGG 3 cut(s) 503, 1283, 1305
SduI GDGCHC 1 cut(s) 1137
SfaNI GCATC 3 cut(s) 252, 1283, 1463
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 1237
SmoI CTYRAG 1 cut(s) 1237
Sse9I AATT 8 cut(s) 24, 247, 433, 543, 724, 1090, 1523, 1532
SsiI CCGC 4 cut(s) 147, 301, 326, 978
SspMI CTAG 1 cut(s) 1368
SstI GAGCTC 1 cut(s) 1137
StyD4I CCNGG 3 cut(s) 501, 1281, 1303
StyI CCWWGG 2 cut(s) 63, 205
TaaI ACNGT 6 cut(s) 281, 287, 622, 643, 712, 881
TaiI ACGT 3 cut(s) 108, 294, 897
TaqI TCGA 4 cut(s) 22, 255, 671, 1262
TaqII GACCGA 1 cut(s) 689
TasI AATT 8 cut(s) 24, 247, 433, 543, 724, 1090, 1523, 1532
TauI GCSGC 2 cut(s) 149, 329
TfiI GAWTC 5 cut(s) 419, 799, 914, 1355, 1362
Tru1I TTAA 4 cut(s) 885, 1101, 1254, 1323
Tru9I TTAA 4 cut(s) 885, 1101, 1254, 1323
TscAI CASTG 6 cut(s) 157, 648, 798, 886, 1006, 1443
TseFI GTSAC 2 cut(s) 281, 287
TseI GCWGC 5 cut(s) 92, 403, 1085, 1415, 1451
Tsp45I GTSAC 2 cut(s) 281, 287
TspDTI ATGAA 3 cut(s) 492, 555, 773
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 6 cut(s) 157, 648, 798, 886, 1006, 1443
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 943
VpaK11BI GGWCC 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 181
XapI RAATTY 5 cut(s) 24, 724, 1090, 1523, 1532
XmiI GTMKAC 1 cut(s) 1339
XmnI GAANNNNTTC 3 cut(s) 28, 764, 1011
XspI CTAG 1 cut(s) 1368
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.