pycom16g25010
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
26696358 .. 26701631
5274 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1212 bp
ATGGAGCTGTTCCCTGCACAACCGGACTTATCTCTACAAATTAGCCCTCCAAACAGCAAACCCTCGTCCTCCTCTTCATCAACTAGTTGGAGGAGAAGCAGTCATCATAGTCATCAGGAGGAGATGGATTTGGGGTTTTGGAAGAGAACCTTGGACTCCCGAAACTCCACCTCCGATGAGCTTTCGAACACCAATCATCGTCCCCACCACTGCAGTAATATTACAGCCAGTACTAGCTGTAATGGTGGTAATGGCAATCTTTTCCATCCCTTTCAGTTTCAGCAAAGCCATTACTTTCCACAAGTTCCCCAAGCAGATGTGCAACAACAATTACAGCAATCGGAAGAGCTGCTTGGGTGTTTGAGACCCATTAGAGGAATTCCACTCTATCAAAACCCTCATCCTCCTCGTCCTCCTAATAATTTCTTCCCATTTTCTTCTTCACAAAAGCCGGTTAATTCCGATAATAATTCGGCAACCTCTACCTCTATAATTTCTAGTTCAACCCCACTATTTCAGGCAGCTGCTTATCATCATCATCATCAAGGTCATCATGGTGGCCTTCTAAGATCCCGGATTTTCTCTCGGTTTCCGGCCAAACGAAGCATGAGGGCCCCTCGGATGCGTTGGACTACAAATCTTCATGCCCGCTTTGTTCACGCCGTTGAGCTTTTGGGTGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTAATGGATGTCAAAGATCTCACCTTGGCACATGTTAAATCTCACTTACAGATGTACCGGACGGTGAAAACCACTGATAAAGCAGCGGCCTCTTCAGGACAAAGTGATGTATATGAAAATGCTTCATCTGGTGACACCACTGAAGACATGATGTATGAACTTCAGAACCCAAGACGGTCTTGTGAGCAGCTGCCATCACCTCAGCAGGGTTCAAGATCGACAACTGTTCAAGATAATAAGGAGTACTACGGCCTCTGGAGCAATCCTTCAAGCAGAGAAGCTTGGTTGCATGCAAACTCAAATGATTCTGCATCTGCAAATATCATAACGTCTCTCGATGATCAGGAGAGGGAGGACCTGAACATGATGGATCCGAAAGGATTAAGCTATGAGAGAATATCGGATGTAAGCAGCTCCTCAACAAACATTTCAGGAGGAGGGACAAGCTTAAGCCCCAGGAAGCCCAATTTGGAGTTCACTTTGGGCAGGTCACATTGA

Protein Analysis

404

Amino Acids

45.05

Weight (kDa)

7.39

Isoelectric Point (pI)

66.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 207 - 258 6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1191
AciI CCGC 2 cut(s) 649, 800
AclWI GGATC 3 cut(s) 564, 1079, 1092
AcoI YGGCCR 2 cut(s) 594, 679
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 3 cut(s) 792, 860, 876
AfaI GTAC 3 cut(s) 232, 770, 959
AfiI CCNNNNNNNGG 2 cut(s) 374, 920
AflII CTTAAG 1 cut(s) 1162
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 4 cut(s) 504, 927, 944, 984
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 1169
AjuI GAANNNNNNNTTGG 8 cut(s) 134, 166, 336, 368, 1166, 1172, 1198, 1204
Alw26I GTCTC 2 cut(s) 358, 1050
AlwI GGATC 3 cut(s) 564, 1079, 1092
AoxI GGCC 6 cut(s) 559, 594, 612, 679, 801, 964
ApaI GGGCCC 1 cut(s) 616
ApeKI GCWGC 7 cut(s) 349, 521, 524, 797, 901, 904, 1125
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 612, 613, 1069
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 4 cut(s) 727, 790, 857, 903
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 1069
BaeGI GKGCMC 1 cut(s) 616
BaeI ACNNNNGTAYC 2 cut(s) 752, 785
BalI TGGCCA 1 cut(s) 681
BamHI GGATCC 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 7 cut(s) 336, 511, 533, 809, 891, 913, 1137
BccI CCATC 4 cut(s) 118, 273, 916, 1075
BceAI ACGGC 2 cut(s) 647, 979
BciT130I CCWGG 1 cut(s) 1171
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 358, 1050
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 84, 234, 498
BfmI CTRYAG 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 1162
BfuAI ACCTGC 1 cut(s) 1191
BglII AGATCT 1 cut(s) 730
BisI GCNGC 8 cut(s) 350, 522, 525, 798, 801, 902, 905, 1126
BlsI GCNGC 8 cut(s) 351, 523, 526, 799, 802, 903, 906, 1127
BmcAI AGTACT 2 cut(s) 232, 959
Bme1390I CCNGG 2 cut(s) 574, 1171
Bme18I GGWCC 1 cut(s) 1069
BmgT120I GGNCC 3 cut(s) 612, 613, 1069
BmiI GGNNCC 3 cut(s) 614, 615, 1086
BmrFI CCNGG 2 cut(s) 574, 1171
BmsI GCATC 2 cut(s) 612, 1034
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 601, 633
BpmI CTGGAG 1 cut(s) 991
Bpu10I CCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 4 cut(s) 150, 617, 738, 1169
BsaWI WCCGGW 2 cut(s) 22, 771
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 920
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 1171
BseDI CCNNGG 4 cut(s) 150, 617, 738, 1169
BseGI GGATG 5 cut(s) 265, 400, 627, 727, 1123
BseLI CCNNNNNNNGG 2 cut(s) 374, 920
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 6 cut(s) 61, 106, 134, 396, 1120, 1164
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 7 cut(s) 336, 511, 533, 809, 891, 913, 1137
BshFI GGCC 6 cut(s) 561, 596, 614, 681, 803, 966
BsiSI CCGG 5 cut(s) 23, 452, 574, 593, 772
BslFI GGGAC 2 cut(s) 186, 1168
BslI CCNNNNNNNGG 2 cut(s) 374, 920
BsmAI GTCTC 2 cut(s) 358, 1050
BsmBI CGTCTC 1 cut(s) 1050
BsmFI GGGAC 2 cut(s) 186, 1168
BsnI GGCC 6 cut(s) 561, 596, 614, 681, 803, 966
Bso31I GGTCTC 1 cut(s) 358
Bsp119I TTCGAA 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 5 cut(s) 569, 730, 929, 1054, 1084
BspACI CCGC 2 cut(s) 649, 800
BspANI GGCC 6 cut(s) 561, 596, 614, 681, 803, 966
BspCNI CTCAG 1 cut(s) 928
BspLI GGNNCC 3 cut(s) 614, 615, 1086
BspMAI CTGCAG 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 1191
BspPI GGATC 3 cut(s) 564, 1079, 1092
BspQI GCTCTTC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 1162
BspTNI GGTCTC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 4 cut(s) 150, 617, 738, 1169
BssMI GATC 5 cut(s) 569, 730, 929, 1054, 1084
BssT1I CCWWGG 2 cut(s) 150, 738
Bst2UI CCWGG 1 cut(s) 1171
Bst4CI ACNGT 3 cut(s) 778, 891, 940
Bst6I CTCTTC 4 cut(s) 79, 137, 339, 811
BstAFI CTTAAG 1 cut(s) 1162
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 649, 1005
BstDEI CTNAG 2 cut(s) 566, 915
BstF5I GGATG 5 cut(s) 265, 400, 627, 727, 1123
BstKTI GATC 5 cut(s) 572, 733, 932, 1057, 1087
BstMAI GTCTC 2 cut(s) 358, 1050
BstMBI GATC 5 cut(s) 569, 730, 929, 1054, 1084
BstMWI GCNNNNNNNGC 1 cut(s) 972
BstNI CCWGG 1 cut(s) 1171
BstNSI RCATGY 2 cut(s) 749, 1007
BstSCI CCNGG 2 cut(s) 572, 1169
BstSFI CTRYAG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 7 cut(s) 336, 511, 533, 809, 891, 913, 1137
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 3 cut(s) 569, 730, 1084
BstYI RGATCY 3 cut(s) 569, 730, 1084
BsuRI GGCC 6 cut(s) 561, 596, 614, 681, 803, 966
BtsCI GGATG 5 cut(s) 265, 400, 627, 727, 1123
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 3 cut(s) 208, 786, 852
BveI ACCTGC 1 cut(s) 1191
Cac8I GCNNGC 2 cut(s) 649, 1005
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 612, 613, 1069
Csp6I GTAC 3 cut(s) 231, 769, 958
CviAII CATG 8 cut(s) 554, 607, 644, 683, 746, 862, 1004, 1078
CviQI GTAC 3 cut(s) 231, 769, 958
DdeI CTNAG 2 cut(s) 566, 915
DpnI GATC 5 cut(s) 571, 732, 931, 1056, 1086
DpnII GATC 5 cut(s) 569, 730, 929, 1054, 1084
EaeI YGGCCR 2 cut(s) 594, 679
Eam1104I CTCTTC 4 cut(s) 79, 137, 339, 811
EarI CTCTTC 4 cut(s) 79, 137, 339, 811
Eco130I CCWWGG 2 cut(s) 150, 738
Eco24I GRGCYC 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 1069
Eco57I CTGAAG 3 cut(s) 792, 860, 876
EcoO109I RGGNCCY 3 cut(s) 612, 613, 1069
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 1169
EcoT14I CCWWGG 2 cut(s) 150, 738
EcoT38I GRGCYC 1 cut(s) 616
ErhI CCWWGG 2 cut(s) 150, 738
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 8 cut(s) 557, 610, 647, 686, 749, 865, 1007, 1081
FalI AAGNNNNNCTT 6 cut(s) 134, 166, 336, 368, 877, 909
FaqI GGGAC 2 cut(s) 186, 1168
FatI CATG 8 cut(s) 553, 606, 643, 682, 745, 861, 1003, 1077
FauI CCCGC 1 cut(s) 656
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 8 cut(s) 350, 522, 525, 798, 801, 902, 905, 1126
FokI GGATG 5 cut(s) 252, 387, 634, 734, 1130
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 8 cut(s) 350, 522, 525, 798, 801, 902, 905, 1126
FspBI CTAG 3 cut(s) 84, 234, 498
GluI GCNGC 8 cut(s) 350, 522, 525, 798, 801, 902, 905, 1126
GsuI CTGGAG 1 cut(s) 991
HaeIII GGCC 6 cut(s) 561, 596, 614, 681, 803, 966
HapII CCGG 5 cut(s) 23, 452, 574, 593, 772
Hin1II CATG 8 cut(s) 557, 610, 647, 686, 749, 865, 1007, 1081
HindIII AAGCTT 2 cut(s) 993, 1159
HinfI GANTC 2 cut(s) 155, 1019
HpaII CCGG 5 cut(s) 23, 452, 574, 593, 772
HphI GGTGA 4 cut(s) 727, 790, 857, 903
Hpy166II GTNNAC 2 cut(s) 658, 1191
Hpy188I TCNGA 7 cut(s) 175, 343, 463, 621, 879, 1089, 1117
Hpy8I GTNNAC 2 cut(s) 658, 1191
HpyAV CCTTC 2 cut(s) 572, 990
HpyCH4III ACNGT 3 cut(s) 778, 891, 940
HpyCH4IV ACGT 1 cut(s) 1043
HpyCH4V TGCA 7 cut(s) 17, 213, 322, 1003, 1007, 1025, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 972
HpyF3I CTNAG 2 cut(s) 566, 915
HpySE526I ACGT 1 cut(s) 1043
Hsp92II CATG 8 cut(s) 557, 610, 647, 686, 749, 865, 1007, 1081
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 5 cut(s) 569, 730, 929, 1054, 1084
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 4, 972, 1133
Lsp1109I GCAGC 7 cut(s) 336, 511, 533, 809, 891, 913, 1137
LweI GCATC 2 cut(s) 612, 1034
MaeI CTAG 3 cut(s) 84, 234, 498
MaeII ACGT 1 cut(s) 1043
MaeIII GTNAC 2 cut(s) 845, 1203
MalI GATC 5 cut(s) 571, 732, 931, 1056, 1086
MboI GATC 5 cut(s) 569, 730, 929, 1054, 1084
MboII GAAGA 9 cut(s) 66, 154, 356, 418, 429, 432, 632, 798, 869
MflI RGATCY 3 cut(s) 569, 730, 1084
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 8 cut(s) 39, 329, 378, 421, 457, 469, 492, 1180
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 68, 608
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
MseI TTAA 4 cut(s) 456, 750, 1097, 1163
MslI CAYNNNNRTG 1 cut(s) 555
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 3 cut(s) 524, 800, 904
MspCI CTTAAG 1 cut(s) 1162
MspI CCGG 5 cut(s) 23, 452, 574, 593, 772
MspR9I CCNGG 2 cut(s) 574, 1171
MvaI CCWGG 1 cut(s) 1171
MwoI GCNNNNNNNGC 1 cut(s) 972
NciI CCSGG 1 cut(s) 574
NdeII GATC 5 cut(s) 569, 730, 929, 1054, 1084
NlaIII CATG 8 cut(s) 557, 610, 647, 686, 749, 865, 1007, 1081
NlaIV GGNNCC 3 cut(s) 614, 615, 1086
NmuCI GTSAC 2 cut(s) 845, 1203
NspI RCATGY 2 cut(s) 749, 1007
NspV TTCGAA 1 cut(s) 185
PaeI GCATGC 1 cut(s) 1007
PciI ACATGT 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 1019
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 8 cut(s) 351, 523, 526, 799, 802, 903, 906, 1127
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 1069
PscI ACATGT 1 cut(s) 745
Psp5II RGGWCCY 1 cut(s) 1069
Psp6I CCWGG 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 1169
PspN4I GGNNCC 3 cut(s) 614, 615, 1086
PspOMI GGGCCC 1 cut(s) 612
PspPI GGNCC 3 cut(s) 612, 613, 1069
PspPPI RGGWCCY 1 cut(s) 1069
PstI CTGCAG 1 cut(s) 215
PsuI RGATCY 3 cut(s) 569, 730, 1084
PvuII CAGCTG 2 cut(s) 524, 904
RsaI GTAC 3 cut(s) 232, 770, 959
RsaNI GTAC 3 cut(s) 231, 769, 958
RseI CAYNNNNRTG 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 4 cut(s) 456, 750, 1097, 1163
SatI GCNGC 8 cut(s) 350, 522, 525, 798, 801, 902, 905, 1126
Sau3AI GATC 5 cut(s) 569, 730, 929, 1054, 1084
Sau96I GGNCC 3 cut(s) 612, 613, 1069
ScaI AGTACT 2 cut(s) 232, 959
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 574, 1171
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 2 cut(s) 612, 1034
SfcI CTRYAG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 1069
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 710, 1162
SmoI CTYRAG 2 cut(s) 710, 1162
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 8 cut(s) 39, 329, 378, 421, 457, 469, 492, 1180
SsiI CCGC 2 cut(s) 649, 800
SspI AATATT 1 cut(s) 220
SspMI CTAG 3 cut(s) 84, 234, 498
StyD4I CCNGG 2 cut(s) 572, 1169
StyI CCWWGG 2 cut(s) 150, 738
TaaI ACNGT 3 cut(s) 778, 891, 940
TaiI ACGT 1 cut(s) 1046
TaqI TCGA 3 cut(s) 185, 932, 1050
TasI AATT 8 cut(s) 39, 329, 378, 421, 457, 469, 492, 1180
TatI WGTACW 2 cut(s) 230, 957
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 1 cut(s) 1019
Tru1I TTAA 4 cut(s) 456, 750, 1097, 1163
Tru9I TTAA 4 cut(s) 456, 750, 1097, 1163
TscAI CASTG 3 cut(s) 215, 793, 859
TseFI GTSAC 2 cut(s) 845, 1203
TseI GCWGC 7 cut(s) 349, 521, 524, 797, 901, 904, 1125
Tsp45I GTSAC 2 cut(s) 845, 1203
TspDTI ATGAA 6 cut(s) 66, 632, 699, 828, 843, 885
TspRI CASTG 3 cut(s) 215, 793, 859
Vha464I CTTAAG 1 cut(s) 1162
VpaK11BI GGWCC 1 cut(s) 1069
XapI RAATTY 1 cut(s) 378
XceI RCATGY 2 cut(s) 749, 1007
XspI CTAG 3 cut(s) 84, 234, 498
ZrmI AGTACT 2 cut(s) 232, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.