pycom16g26000

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
28229766 .. 28231226
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1461 bp
ATGGGTCATAGTTTTCATTCAATGGATTCTCTCTTGTCCGCTACAAATCCCCTTTTGTTCCCTCATAGTTTTGCAAGAAGTGGCCGCCGGCTGGTTGCAGTGGCGCAGCGTTCTAACACAAGGACACGACTTCCCAAGAACCTTCGCTACCCGCGGCGCACCAAGCTTCCTCCGGACCTCCTTGGAATCGACCCCTTCTTGAACAACACAAGCACTTCCACAGACCCTTCATCTCGAACCGAAGAATTCGAGGCGGCAGCAGCAGCAGCAGATGAAGAAGGTAAAGAAGACGGCGTCATTGCGTGGGAATCAGATGAGATTGAAGCTATTTCATCCCTTTTCCAAGGGAGAATACCCCAGAAACCCGGAATGCTGAATCGACAGAGGCCTTTCCCGCTCCCACTTCCTCACAAGCTTCGACCTTTGAGACTTCCCACGCCCAAGAAACATGTTAAGGTGCCGCCCGTATGCGACCAAGTGTACAAAAACCCTAATGCGCTTGTTGGGTTAGCAAGGGAAATCAGAAACCTTGGAGCAGACGAAGACGTGGGACGAGTTCTGAACAATTGGGTTCAGTTTCTTAGAAAAGGCTCTCTTTCCATGACAATTAGGGAATTGGGTCATATGGGTCTCCCCGAGAGAGCTCTGCAGACCTTCTCTTGGGCTCAGAAACAGCCTCAACTCTTCCCCGATGACCGCCTTTTGGCTTCAACGGTTGAGGTCCTGGCAAGGCACCACGAGCTTAAACTGCCTTTCAATTTGGACAAGTTTGCTAGTTTGGCAAGTCGTGGAGTGATTGAGGCAATGGCAAGAGGGTTCATTAAAGGAGGAAGCTTGCATCTAGCTTGGAAGCTTGTATTGGTAGCTAAGAGTAGTGGAAGAAAGTTGGATCCGGGTTTATATGCTAAGCTGATACTCAAGCTTGGGAAGAACCCCGATAAGCACAGGCTTGTAATGACCTTACTCGACGAGCTTGGAGAAAGGGAAGACATGAAGTTAAGTCAGCAGGATTGTACTGCTATTATGAAAGTGTGCATTAGGCTTGGGAAATTTGAAGTTGTGGAGAGTGTTTATGACTGGTTTAGACAATCTGGGCATGATCCAAGTGTCGTTATGTATACAACTCTGATTCATAGCCGCTATTCGCAGAAGAAATACAGGGAGGCTCTAGCTTTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGATTTTCCAGCTTATCGTGTGGCAGTAAAGCTTTTTGTTGCTCTGAATGATCATCCAAGGGCAGTAAGATATTTCTCAAAGCTTAAGGAAGCAGGTTTCTCTCCAACATATGATGTATATTTAGACATGATTAAAATTTACATGGTTTCTGGGAGACTGGCTAAGTGCAGGGATGTATTCAAGGAGGTAGAAATAGCAGGATTGAAGTTAGATAAAGAAACAATGTCTCAGTTGTTGCAATTAGAAAGATAA

Protein Analysis

487

Amino Acids

55.14

Weight (kDa)

9.55

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013270)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1292
AccB1I GGYRCC 2 cut(s) 457, 732
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 1118
AccII CGCG 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 9 cut(s) 39, 85, 152, 154, 254, 395, 461, 697, 1138
AclWI GGATC 3 cut(s) 884, 897, 1094
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 3 cut(s) 245, 1049, 1344
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 482, 1015
AfiI CCNNNNNNNGG 3 cut(s) 91, 660, 703
AflII CTTAAG 1 cut(s) 1292
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 9 cut(s) 21, 202, 323, 711, 757, 1055, 1197, 1390, 1414
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 723
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 5 cut(s) 421, 635, 1208, 1357, 1440
AlwI GGATC 3 cut(s) 884, 897, 1094
Ama87I CYCGRG 1 cut(s) 635
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 82, 386
ApeKI GCWGC 5 cut(s) 106, 257, 260, 263, 266
ApoI RAATTY 3 cut(s) 245, 1049, 1344
AspLEI GCGC 3 cut(s) 106, 159, 499
AspS9I GGNCC 2 cut(s) 175, 721
AsuC2I CCSGG 2 cut(s) 366, 894
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 2 cut(s) 175, 721
BamHI GGATCC 1 cut(s) 889
BanI GGYRCC 2 cut(s) 457, 732
BanII GRGCYC 2 cut(s) 646, 667
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 3 cut(s) 294, 549, 993
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 5 cut(s) 118, 269, 272, 275, 278
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 725
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 2 cut(s) 366, 894
BcoDI GTCTC 5 cut(s) 421, 635, 1208, 1357, 1440
BfaI CTAG 3 cut(s) 774, 842, 1169
BfmI CTRYAG 1 cut(s) 647
BfrI CTTAAG 1 cut(s) 1292
BfuAI ACCTGC 1 cut(s) 1292
BlpI GCTNAGC 1 cut(s) 906
Bme1390I CCNGG 3 cut(s) 366, 725, 894
Bme18I GGWCC 2 cut(s) 175, 721
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 175, 721
BmiI GGNNCC 3 cut(s) 459, 734, 891
BmrFI CCNGG 3 cut(s) 366, 725, 894
BmsI GCATC 1 cut(s) 847
BpiI GAAGAC 3 cut(s) 294, 549, 993
Bpu1102I GCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 2 cut(s) 366, 894
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 5 cut(s) 152, 181, 343, 529, 1265
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 660, 703
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 1082, 1371
Bse3DI GCAATG 2 cut(s) 297, 810
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 5 cut(s) 152, 181, 343, 529, 1265
BseGI GGATG 3 cut(s) 332, 1261, 1387
BseLI CCNNNNNNNGG 3 cut(s) 91, 660, 703
BseMI GCAATG 2 cut(s) 297, 810
BseMII CTCAG 2 cut(s) 680, 1451
BseNI ACTGG 2 cut(s) 1082, 1371
BseXI GCAGC 5 cut(s) 118, 269, 272, 275, 278
BsgI GTGCAG 1 cut(s) 1396
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 84, 388
BshNI GGYRCC 2 cut(s) 457, 732
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 4 cut(s) 88, 173, 366, 893
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 3 cut(s) 91, 660, 703
BsmAI GTCTC 5 cut(s) 421, 635, 1208, 1357, 1440
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 2 cut(s) 84, 388
Bso31I GGTCTC 1 cut(s) 635
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 646, 667
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 889, 1099, 1258
Bsp1720I GCTNAGC 1 cut(s) 906
BspACI CCGC 9 cut(s) 39, 85, 152, 154, 254, 395, 461, 697, 1138
BspANI GGCC 2 cut(s) 84, 388
BspCNI CTCAG 2 cut(s) 679, 1450
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 459, 734, 891
BspMAI CTGCAG 1 cut(s) 651
BspMI ACCTGC 1 cut(s) 1292
BspPI GGATC 3 cut(s) 884, 897, 1094
BspT107I GGYRCC 2 cut(s) 457, 732
BspTI CTTAAG 1 cut(s) 1292
BspTNI GGTCTC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 397
BsrDI GCAATG 2 cut(s) 297, 810
BsrFI RCCGGY 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 1082, 1371
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 5 cut(s) 152, 181, 343, 529, 1265
BssMI GATC 3 cut(s) 889, 1099, 1258
BssNAI GTATAC 1 cut(s) 1119
BssNI GRCGYC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 4 cut(s) 181, 343, 529, 1265
Bst1107I GTATAC 1 cut(s) 1119
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 1 cut(s) 689
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 1292
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 89, 836
BstDEI CTNAG 6 cut(s) 581, 666, 867, 906, 1371, 1437
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 332, 1261, 1387
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 3 cut(s) 106, 159, 499
BstKTI GATC 3 cut(s) 892, 1102, 1261
BstMAI GTCTC 5 cut(s) 421, 635, 1208, 1357, 1440
BstMBI GATC 3 cut(s) 889, 1099, 1258
BstMWI GCNNNNNNNGC 8 cut(s) 163, 260, 263, 266, 394, 739, 748, 779
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 364, 723, 892
BstSFI CTRYAG 1 cut(s) 647
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 5 cut(s) 118, 269, 272, 275, 278
BstV2I GAAGAC 3 cut(s) 294, 549, 993
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BstZ17I GTATAC 1 cut(s) 1119
BsuRI GGCC 2 cut(s) 84, 388
BtgI CCRYGG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 3 cut(s) 332, 1261, 1387
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 1292
Cac8I GCNNGC 2 cut(s) 89, 836
CfoI GCGC 3 cut(s) 106, 159, 499
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 175, 721
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 481, 1014
CviAII CATG 6 cut(s) 449, 601, 991, 1097, 1336, 1351
CviQI GTAC 2 cut(s) 481, 1014
DdeI CTNAG 6 cut(s) 581, 666, 867, 906, 1371, 1437
DpnI GATC 3 cut(s) 891, 1101, 1260
DpnII GATC 3 cut(s) 889, 1099, 1258
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 4 cut(s) 181, 343, 529, 1265
Eco147I AGGCCT 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 646, 667
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 175, 721
Eco53kI GAGCTC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 723
EcoT14I CCWWGG 4 cut(s) 181, 343, 529, 1265
EcoT38I GRGCYC 2 cut(s) 646, 667
ErhI CCWWGG 4 cut(s) 181, 343, 529, 1265
FaeI CATG 6 cut(s) 452, 604, 994, 1100, 1339, 1354
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 564
FatI CATG 6 cut(s) 448, 600, 990, 1096, 1335, 1350
FauI CCCGC 2 cut(s) 159, 402
FauNDI CATATG 2 cut(s) 624, 1318
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 1118
FokI GGATG 3 cut(s) 319, 1248, 1394
FriOI GRGCYC 2 cut(s) 646, 667
FspBI CTAG 3 cut(s) 774, 842, 1169
GlaI GCGC 3 cut(s) 105, 158, 498
HaeIII GGCC 2 cut(s) 84, 388
HapII CCGG 4 cut(s) 88, 173, 366, 893
HgaI GACGC 1 cut(s) 283
HhaI GCGC 3 cut(s) 106, 159, 499
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 6 cut(s) 452, 604, 994, 1100, 1339, 1354
Hin6I GCGC 3 cut(s) 104, 157, 497
HinP1I GCGC 3 cut(s) 104, 157, 497
HindIII AAGCTT 7 cut(s) 164, 413, 832, 851, 920, 1238, 1289
HinfI GANTC 5 cut(s) 26, 186, 308, 376, 1129
HpaII CCGG 4 cut(s) 88, 173, 366, 893
Hpy166II GTNNAC 2 cut(s) 481, 1119
Hpy188I TCNGA 6 cut(s) 313, 524, 561, 669, 1128, 1254
Hpy188III TCNNGA 3 cut(s) 173, 199, 234
Hpy8I GTNNAC 2 cut(s) 481, 1119
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 5 cut(s) 152, 205, 237, 272, 664
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 7 cut(s) 74, 98, 649, 838, 1035, 1377, 1447
HpyF10VI GCNNNNNNNGC 8 cut(s) 163, 260, 263, 266, 394, 739, 748, 779
HpyF3I CTNAG 6 cut(s) 581, 666, 867, 906, 1371, 1437
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 6 cut(s) 452, 604, 994, 1100, 1339, 1354
HspAI GCGC 3 cut(s) 104, 157, 497
Kpn2I TCCGGA 1 cut(s) 172
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 1258
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 889, 1099, 1258
LmnI GCTCC 2 cut(s) 402, 533
Lsp1109I GCAGC 5 cut(s) 118, 269, 272, 275, 278
LweI GCATC 1 cut(s) 847
MaeI CTAG 3 cut(s) 774, 842, 1169
MaeII ACGT 1 cut(s) 546
MalI GATC 3 cut(s) 891, 1101, 1260
MbiI CCGCTC 1 cut(s) 397
MboI GATC 3 cut(s) 889, 1099, 1258
MboII GAAGA 9 cut(s) 254, 287, 299, 554, 676, 891, 940, 998, 1162
MfeI CAATTG 1 cut(s) 565
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 2 cut(s) 646, 667
MluCI AATT 9 cut(s) 245, 565, 606, 614, 757, 1049, 1198, 1344, 1448
MmeI TCCRAC 2 cut(s) 867, 1337
MroI TCCGGA 1 cut(s) 172
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 6 cut(s) 453, 744, 822, 998, 1293, 1341
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 1292
MspI CCGG 4 cut(s) 88, 173, 366, 893
MspR9I CCNGG 3 cut(s) 366, 725, 894
MunI CAATTG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 8 cut(s) 163, 260, 263, 266, 394, 739, 748, 779
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 366, 894
NdeI CATATG 2 cut(s) 624, 1318
NdeII GATC 3 cut(s) 889, 1099, 1258
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 6 cut(s) 452, 604, 994, 1100, 1339, 1354
NlaIV GGNNCC 3 cut(s) 459, 734, 891
NspI RCATGY 1 cut(s) 452
PceI AGGCCT 1 cut(s) 388
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 5 cut(s) 26, 186, 308, 376, 1129
PflFI GACNNNGTC 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 3 cut(s) 459, 734, 891
PspPI GGNCC 2 cut(s) 175, 721
PspPPI RGGWCCY 1 cut(s) 721
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstI CTGCAG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 889
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 2 cut(s) 482, 1015
RsaNI GTAC 2 cut(s) 481, 1014
SacI GAGCTC 1 cut(s) 646
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 6 cut(s) 453, 744, 822, 998, 1293, 1341
Sau3AI GATC 3 cut(s) 889, 1099, 1258
Sau96I GGNCC 2 cut(s) 175, 721
ScrFI CCNGG 3 cut(s) 366, 725, 894
SduI GDGCHC 2 cut(s) 646, 667
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 647
Sfr303I CCGCGG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 2 cut(s) 175, 721
SmlI CTYRAG 2 cut(s) 917, 1292
SmoI CTYRAG 2 cut(s) 917, 1292
Sse9I AATT 9 cut(s) 245, 565, 606, 614, 757, 1049, 1198, 1344, 1448
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 9 cut(s) 39, 85, 152, 154, 254, 395, 461, 697, 1138
SspMI CTAG 3 cut(s) 774, 842, 1169
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 364, 723, 892
StyI CCWWGG 4 cut(s) 181, 343, 529, 1265
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 549
TaqI TCGA 6 cut(s) 189, 235, 249, 379, 418, 966
TasI AATT 9 cut(s) 245, 565, 606, 614, 757, 1049, 1198, 1344, 1448
TatI WGTACW 2 cut(s) 480, 1013
TauI GCSGC 5 cut(s) 87, 157, 257, 463, 1140
TfiI GAWTC 5 cut(s) 26, 186, 308, 376, 1129
Tru1I TTAA 6 cut(s) 453, 744, 822, 998, 1293, 1341
Tru9I TTAA 6 cut(s) 453, 744, 822, 998, 1293, 1341
TscAI CASTG 1 cut(s) 105
TseI GCWGC 5 cut(s) 106, 257, 260, 263, 266
TspDTI ATGAA 8 cut(s) 5, 219, 288, 321, 808, 1007, 1040, 1121
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 293
Vha464I CTTAAG 1 cut(s) 1292
VpaK11BI GGWCC 2 cut(s) 175, 721
XapI RAATTY 3 cut(s) 245, 1049, 1344
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 1118
XspI CTAG 3 cut(s) 774, 842, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.