Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007856

Physical Location & Seq

Genomic Coordinates Reverse (-)

271785 .. 273843

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATTGCGATCCCTTATTTAACCGCGTTAACCACGTACTTCAGCTATGGATTGCTATTCGTTTTCGGCCAAGTCAGAGATTTCTTCCGCAAAATCATCGACTGGTGGAGTGCTAGCAATTTGCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTATATTCGCCGGCTTTATCTTCGAATTCAGGACTGTTTCAATAGACCTATTGCAAGTGCTCCTGATGCTTGGTTTGATGTGGTTGAACGCTACTCCAATGACTACAACAAAACACTCAAGCTGACGAAAAAAACTAGTCGATGCCTTAACTTAGGATCTTACAATTACCTTGGCTTTGCTGCATCCGATGAGTACTGCACGCCTCGCGCTATTGAGACGTTGAAAAAATATTCTCCCAGTACCTGTAGCAGCAGAGTTGACGGTGGCACCACCAATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTCGGGAAACCTGCTGCAATAGTTTTTGGAATGGGTTATGTCACAAACTCTGCTATCCTTCCTGTCCTGATGGGGAAGGGAGGCTTGATTGTTAGTGATTCTTTGAACCACAACTCTATTGTCAACGGCGCAAGAGGATCTGGAGCTAGAGTTTGTGTTTTCCAACACAATACTCCTGCTCACTTGGAGGAAGTTTTGAGAGAAAAAATCGCAGAGGGGCAGCCTAGGACCCGCAGACCCTGGAAGAAGATAATCGTCATTGTGGAGGGGATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCAATCTGCAAAAAATATAAGGCATATACATATTTGGATGAGGCCCACAGCATTGGAGCAGTAGGGAAAACAGGAAGAGGTGTTTGTGAGCTCTTAGGAGTCGATACAGCTGATGTAGATATCATGATGGGAACATTTACCAAATCATTTGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

316

Amino Acids

35.05

Weight (kDa)

8.43

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	102 - 314	6.6e-30	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48780 AT3G48780 AT3G48790 AT3G48790 AT5G23670 AT5G23670
fragaria_vesca	FvH4_6g54160
malus_domestica	MD09G1004800.v1.1 MD17G1008800.v1.1
prunus_persica	Prupe.3G312000_v2.0.a1 Prupe.5G144700_v2.0.a1
pyrus_communis	pycom111g00350 pycom17g00370
rosa_chinensis	RchiOBHm_Chr2g0176331
rosa_laevigata	RLG00000022404
rosa_multiflora	Rmu_sc0019886.1_g000001 Rmu_sc0027060.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076560
rosa_rugosa	Rorug02G0593300
rosa_samantha	Rh2AG671800 Rh2BG683300 Rh2CG646000 Rh2DG696800
rosa_wichuraiana	Rw2G055090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	2 cut(s)	26, 369
AciI	CCGC	3 cut(s)	24, 88, 706
AclWI	GGATC	3 cut(s)	4, 325, 619
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	186, 469
AcuI	CTGAAG	1 cut(s)	25
AfaI	GTAC	3 cut(s)	38, 356, 403
AgsI	TTSAA	5 cut(s)	155, 202, 248, 385, 580
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	713
AluBI	AGCT	7 cut(s)	45, 283, 451, 620, 766, 880, 899
AluI	AGCT	7 cut(s)	45, 283, 451, 620, 766, 880, 899
Alw21I	GWGCWC	2 cut(s)	223, 882
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	4, 325, 619
AlwNI	CAGNNNCTG	2 cut(s)	405, 714
AoxI	GGCC	2 cut(s)	67, 831
ApeKI	GCWGC	4 cut(s)	341, 411, 488, 694
ApoI	RAATTY	2 cut(s)	186, 469
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	371, 605
AspS9I	GGNCC	2 cut(s)	702, 832
AsuII	TTCGAA	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	702
AvrII	CCTAGG	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	882
Bbv12I	GWGCWC	2 cut(s)	223, 882
BbvI	GCAGC	4 cut(s)	328, 423, 475, 706
BccI	CCATC	2 cut(s)	538, 910
BceAI	ACGGC	1 cut(s)	616
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	4 cut(s)	114, 297, 621, 699
BfmI	CTRYAG	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	342, 412, 489, 695
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	4 cut(s)	343, 413, 490, 696
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	715
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	702, 832
BmiI	GGNNCC	2 cut(s)	430, 704
BmrFI	CCNGG	1 cut(s)	715
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	217, 293, 353
BmtI	GCTAGC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	331, 698, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	107, 399
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	715
BseDI	CCNNGG	3 cut(s)	331, 698, 713
BseGI	GGATG	2 cut(s)	344, 832
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	2 cut(s)	107, 399
BseXI	GCAGC	4 cut(s)	328, 423, 475, 706
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	2 cut(s)	26, 369
BshFI	GGCC	2 cut(s)	69, 833
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	223, 882
BsiSI	CCGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	69, 833
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	223, 882
Bsp143I	GATC	4 cut(s)	9, 317, 611, 941
BspACI	CCGC	3 cut(s)	24, 88, 706
BspANI	GGCC	2 cut(s)	69, 833
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	2 cut(s)	26, 369
BspHI	TCATGA	2 cut(s)	912, 944
BspLI	GGNNCC	2 cut(s)	430, 704
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	4, 325, 619
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	107, 399
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	331, 698, 713
BssMI	GATC	4 cut(s)	9, 317, 611, 941
BssT1I	CCWWGG	2 cut(s)	331, 698
Bst2UI	CCWGG	1 cut(s)	715
Bst4CI	ACNGT	2 cut(s)	197, 425
Bst6I	CTCTTC	2 cut(s)	450, 859
BstBAI	YACGTR	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	115, 173, 362
BstDEI	CTNAG	3 cut(s)	313, 780, 883
BstF5I	GGATG	2 cut(s)	344, 832
BstFNI	CGCG	2 cut(s)	26, 369
BstHHI	GCGC	2 cut(s)	371, 605
BstKTI	GATC	4 cut(s)	12, 320, 614, 944
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	9, 317, 611, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 366, 448
BstNI	CCWGG	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	713
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	2 cut(s)	26, 369
BstV1I	GCAGC	4 cut(s)	328, 423, 475, 706
BstX2I	RGATCY	2 cut(s)	317, 611
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	2 cut(s)	317, 611
BsuRI	GGCC	2 cut(s)	69, 833
BtsCI	GGATG	2 cut(s)	344, 832
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	115, 173, 362
CaiI	CAGNNNCTG	2 cut(s)	405, 714
CciI	TCATGA	2 cut(s)	912, 944
CfoI	GCGC	2 cut(s)	371, 605
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	702, 832
Csp6I	GTAC	3 cut(s)	37, 355, 402
CviAII	CATG	3 cut(s)	754, 913, 945
CviQI	GTAC	3 cut(s)	37, 355, 402
DdeI	CTNAG	3 cut(s)	313, 780, 883
DpnI	GATC	4 cut(s)	11, 319, 613, 943
DpnII	GATC	4 cut(s)	9, 317, 611, 941
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	450, 859
EarI	CTCTTC	2 cut(s)	450, 859
Ecl136II	GAGCTC	1 cut(s)	880
Eco130I	CCWWGG	2 cut(s)	331, 698
Eco24I	GRGCYC	1 cut(s)	882
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	880
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	713
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	2 cut(s)	331, 698
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	2 cut(s)	331, 698
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	757, 916, 948
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 750, 782
FatI	CATG	3 cut(s)	753, 912, 944
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	4 cut(s)	342, 412, 489, 695
FokI	GGATG	2 cut(s)	331, 839
FriOI	GRGCYC	1 cut(s)	882
Fsp4HI	GCNGC	4 cut(s)	342, 412, 489, 695
FspBI	CTAG	4 cut(s)	114, 297, 621, 699
GlaI	GCGC	2 cut(s)	370, 604
GluI	GCNGC	4 cut(s)	342, 412, 489, 695
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	69, 833
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	2 cut(s)	371, 605
Hin1II	CATG	3 cut(s)	757, 916, 948
Hin6I	GCGC	2 cut(s)	369, 603
HinP1I	GCGC	2 cut(s)	369, 603
HincII	GTYRAC	3 cut(s)	30, 421, 598
HindII	GTYRAC	3 cut(s)	30, 421, 598
HinfI	GANTC	2 cut(s)	572, 888
HpaI	GTTAAC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	30, 421, 598
Hpy188I	TCNGA	2 cut(s)	77, 349
Hpy188III	TCNNGA	8 cut(s)	191, 224, 478, 541, 615, 779, 913, 945
Hpy8I	GTNNAC	3 cut(s)	30, 421, 598
HpyAV	CCTTC	3 cut(s)	542, 544, 752
HpyCH4III	ACNGT	2 cut(s)	197, 425
HpyCH4IV	ACGT	2 cut(s)	35, 380
HpyCH4V	TGCA	9 cut(s)	124, 215, 344, 360, 442, 467, 491, 771, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 366, 448
HpyF3I	CTNAG	3 cut(s)	313, 780, 883
HpySE526I	ACGT	2 cut(s)	35, 380
Hsp92II	CATG	3 cut(s)	757, 916, 948
HspAI	GCGC	2 cut(s)	369, 603
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	9, 317, 611, 941
LmnI	GCTCC	5 cut(s)	139, 226, 617, 763, 845
Lsp1109I	GCAGC	4 cut(s)	328, 423, 475, 706
LweI	GCATC	3 cut(s)	217, 293, 353
MaeI	CTAG	4 cut(s)	114, 297, 621, 699
MaeII	ACGT	2 cut(s)	35, 380
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	4 cut(s)	11, 319, 613, 943
MboI	GATC	4 cut(s)	9, 317, 611, 941
MboII	GAAGA	7 cut(s)	76, 167, 173, 467, 730, 733, 876
MflI	RGATCY	2 cut(s)	317, 611
MhlI	GDGCHC	2 cut(s)	223, 882
MluCI	AATT	5 cut(s)	118, 186, 325, 436, 469
MlyI	GAGTC	1 cut(s)	897
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	8 cut(s)	375, 548, 602, 655, 682, 733, 823, 860
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	3 cut(s)	20, 29, 309
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	715
MvnI	CGCG	2 cut(s)	26, 369
MwoI	GCNNNNNNNGC	3 cut(s)	227, 366, 448
NaeI	GCCGGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	9, 317, 611, 941
NgoMIV	GCCGGC	1 cut(s)	171
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	757, 916, 948
NlaIV	GGNNCC	2 cut(s)	430, 704
NmuCI	GTSAC	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	184
PagI	TCATGA	2 cut(s)	912, 944
PdiI	GCCGGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	343, 413, 490, 696
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
Ppu21I	YACGTR	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	882
Psp5II	RGGWCCY	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	713
PspN4I	GGNNCC	2 cut(s)	430, 704
PspPI	GGNCC	2 cut(s)	702, 832
PspPPI	RGGWCCY	1 cut(s)	702
PstNI	CAGNNNCTG	2 cut(s)	405, 714
PsuI	RGATCY	2 cut(s)	317, 611
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	3 cut(s)	38, 356, 403
RsaNI	GTAC	3 cut(s)	37, 355, 402
SacI	GAGCTC	1 cut(s)	882
SaqAI	TTAA	3 cut(s)	20, 29, 309
SatI	GCNGC	4 cut(s)	342, 412, 489, 695
Sau3AI	GATC	4 cut(s)	9, 317, 611, 941
Sau96I	GGNCC	2 cut(s)	702, 832
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	897
ScrFI	CCNGG	1 cut(s)	715
SduI	GDGCHC	2 cut(s)	223, 882
SfaNI	GCATC	3 cut(s)	217, 293, 353
SfcI	CTRYAG	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	5 cut(s)	118, 186, 325, 436, 469
SsiI	CCGC	3 cut(s)	24, 88, 706
SspI	AATATT	1 cut(s)	392
SspMI	CTAG	4 cut(s)	114, 297, 621, 699
SstI	GAGCTC	1 cut(s)	882
StyD4I	CCNGG	1 cut(s)	713
StyI	CCWWGG	2 cut(s)	331, 698
TaaI	ACNGT	2 cut(s)	197, 425
TaiI	ACGT	2 cut(s)	38, 383
TaqI	TCGA	4 cut(s)	99, 184, 301, 891
TasI	AATT	5 cut(s)	118, 186, 325, 436, 469
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	20, 29, 309
Tru9I	TTAA	3 cut(s)	20, 29, 309
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	4 cut(s)	341, 411, 488, 694
Tsp45I	GTSAC	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	2 cut(s)	186, 469
XmaJI	CCTAGG	1 cut(s)	698
XspI	CTAG	4 cut(s)	114, 297, 621, 699
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.