Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Forward (+)

521379 .. 523836

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGAGTCCTCCTGCGAAGAAAGTCCTGCTCACCTCCAATGGTGACGAGATTTCACAGAGCATTGCCTTCTCTCTGGCCCAACGCGGCTGCAGGTTGGTGTTGATGGGGAAGGAGAGCTGCCTACGGGGTAGTGTGCAGAAAATAACGGGCTCACTGGAGGGTGCGGTGGCGCCGGTGGAGGTGGTGGACGTGGACATCGAGGACGAGAGGGAGGGAACTTTTGATGAGGCGGTGGAGAAGGCATGCAACATCTTGGGCAATTTGGATGCCTTTGTGCATTGCTATGCTTACGAAGGAAAAATGCAAGACCACCTACAATTAGCTGAAGGTGAATTCAAAAAGATATTGAAGATTAACTTTATGTCTGCGTGGTTTCTGTTAAACGCTGTTAGCAGAAGAATGCGAGATCACAAGTCAGGAGGTTCGATCGTGTTCTTGACCTCGATAATTGGAGCCGAAAGAGGGCTTTATCCAGGAGCTGCTGCTTATAGTGCATGTTCTGCAGGCCTTCAGCAGTTAGCTAGGACGTCAGCCCTGGAGATTGGACGATACCAGATTAGGGTCAATGCTATTGCCCGTGGTTTGCATCTACAAGACGAATTTCCAATTTCTGTGGGAATAGAGAGAGCGAAGAAGCAGGTGATGGAGGCAGCTCCATTGGGGAGATGGCTTGATGTTAAAAACGATCTGGCTTCAACTGTCATATATTTAATCAGCGATGATTCACGGTACATGACAGGCACAACAATATTTGTGGATGGGGCACAGTCTCTAACAAGACCTCGGATGCGTTCTTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

269

Amino Acids

29.34

Weight (kDa)

6.91

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	7 - 196	2.3e-24	short chain dehydrogenase
adh_short_C2	PF13561	18 - 255	1.1e-40	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
AatII	GACGTC	1 cut(s)	533
Acc36I	ACCTGC	2 cut(s)	84, 631
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	87, 167, 233
AcsI	RAATTY	2 cut(s)	335, 602
AcuI	CTGAAG	2 cut(s)	348, 497
AcyI	GRCGYC	2 cut(s)	173, 530
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	2 cut(s)	465, 562
AgsI	TTSAA	3 cut(s)	340, 352, 699
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	475, 537
AluBI	AGCT	5 cut(s)	120, 326, 482, 524, 656
AluI	AGCT	5 cut(s)	120, 326, 482, 524, 656
Alw26I	GTCTC	1 cut(s)	777
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	78, 508
ApeKI	GCWGC	5 cut(s)	90, 120, 482, 485, 653
ApoI	RAATTY	2 cut(s)	335, 602
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	4 cut(s)	25, 56, 344, 655
BaeGI	GKGCMC	1 cut(s)	769
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	5 cut(s)	77, 107, 469, 472, 665
BccI	CCATC	4 cut(s)	100, 640, 663, 755
BciT130I	CCWGG	2 cut(s)	477, 539
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	91, 504
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	84, 631
BisI	GCNGC	6 cut(s)	88, 91, 121, 483, 486, 654
BlsI	GCNGC	6 cut(s)	89, 92, 122, 484, 487, 655
Bme1390I	CCNGG	2 cut(s)	477, 539
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	174, 457
BmrFI	CCNGG	2 cut(s)	477, 539
BmsI	GCATC	3 cut(s)	259, 598, 780
BpmI	CTGGAG	2 cut(s)	179, 560
BsaHI	GRCGYC	2 cut(s)	173, 530
BsaJI	CCNNGG	3 cut(s)	537, 580, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 562
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	63, 280
BseBI	CCWGG	2 cut(s)	477, 539
BseDI	CCNNGG	3 cut(s)	537, 580, 785
BseGI	GGATG	3 cut(s)	274, 766, 795
BseLI	CCNNNNNNNGG	2 cut(s)	465, 562
BseMI	GCAATG	2 cut(s)	63, 280
BseNI	ACTGG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	5 cut(s)	77, 107, 469, 472, 665
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	80, 510
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	465, 562
BsmAI	GTCTC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	80, 510
Bsp1286I	GDGCHC	2 cut(s)	155, 769
Bsp143I	GATC	3 cut(s)	409, 429, 688
BspACI	CCGC	3 cut(s)	87, 167, 233
BspANI	GGCC	2 cut(s)	80, 510
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	174, 457
BspMAI	CTGCAG	2 cut(s)	95, 508
BspMI	ACCTGC	2 cut(s)	84, 631
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	63, 280
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	537, 580, 785
BssMI	GATC	3 cut(s)	409, 429, 688
BssNI	GRCGYC	2 cut(s)	173, 530
Bst2UI	CCWGG	2 cut(s)	477, 539
Bst4CI	ACNGT	3 cut(s)	703, 732, 771
BstACI	GRCGYC	2 cut(s)	173, 530
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	247, 508
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	274, 766, 795
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	412, 432, 691
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	3 cut(s)	409, 429, 688
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 503
BstNI	CCWGG	2 cut(s)	477, 539
BstNSI	RCATGY	2 cut(s)	249, 501
BstSCI	CCNGG	2 cut(s)	475, 537
BstSFI	CTRYAG	2 cut(s)	91, 504
BstSLI	GKGCMC	1 cut(s)	769
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	77, 107, 469, 472, 665
BsuRI	GGCC	2 cut(s)	80, 510
BtgI	CCRYGG	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	735
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	274, 766, 795
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	2 cut(s)	84, 631
Cac8I	GCNNGC	2 cut(s)	247, 508
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	733
CspCI	CAANNNNNGTGG	4 cut(s)	597, 632, 738, 773
CviAII	CATG	3 cut(s)	246, 498, 736
CviQI	GTAC	1 cut(s)	733
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	3 cut(s)	411, 431, 690
DpnII	GATC	3 cut(s)	409, 429, 688
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	348, 497
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	475, 537
EcoT38I	GRGCYC	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaeI	CATG	3 cut(s)	249, 501, 739
FaiI	YATR	9 cut(s)	247, 288, 365, 492, 499, 707, 709, 737, 803
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	3 cut(s)	245, 497, 735
Fnu4HI	GCNGC	6 cut(s)	88, 91, 121, 483, 486, 654
FokI	GGATG	3 cut(s)	281, 773, 802
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	6 cut(s)	88, 91, 121, 483, 486, 654
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	6 cut(s)	88, 91, 121, 483, 486, 654
GsuI	CTGGAG	2 cut(s)	179, 560
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	80, 510
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	2 cut(s)	173, 530
Hin1II	CATG	3 cut(s)	249, 501, 739
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	7, 725
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	4 cut(s)	25, 56, 344, 655
Hpy166II	GTNNAC	2 cut(s)	190, 196
Hpy188I	TCNGA	1 cut(s)	789
Hpy188III	TCNNGA	2 cut(s)	420, 439
Hpy8I	GTNNAC	2 cut(s)	190, 196
HpyAV	CCTTC	6 cut(s)	79, 106, 235, 290, 323, 521
HpyCH4III	ACNGT	3 cut(s)	703, 732, 771
HpyCH4IV	ACGT	2 cut(s)	192, 530
HpyCH4V	TGCA	8 cut(s)	93, 139, 249, 280, 307, 497, 506, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 503
HpySE526I	ACGT	2 cut(s)	192, 530
Hsp92I	GRCGYC	2 cut(s)	173, 530
Hsp92II	CATG	3 cut(s)	249, 501, 739
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	409, 429, 688
LmnI	GCTCC	3 cut(s)	455, 479, 661
Lsp1109I	GCAGC	5 cut(s)	77, 107, 469, 472, 665
LweI	GCATC	3 cut(s)	259, 598, 780
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	2 cut(s)	192, 530
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	411, 431, 690
MboI	GATC	3 cut(s)	409, 429, 688
MboII	GAAGA	4 cut(s)	31, 364, 411, 646
MhlI	GDGCHC	2 cut(s)	155, 769
MluCI	AATT	6 cut(s)	262, 320, 335, 450, 602, 609
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	16
MseI	TTAA	4 cut(s)	357, 383, 681, 713
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	477, 539
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	2 cut(s)	477, 539
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	494, 503
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	3 cut(s)	409, 429, 688
NlaIII	CATG	3 cut(s)	249, 501, 739
NlaIV	GGNNCC	2 cut(s)	174, 457
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	2 cut(s)	249, 501
PaeI	GCATGC	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	6 cut(s)	89, 92, 122, 484, 487, 655
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	475, 537
PspGI	CCWGG	2 cut(s)	475, 537
PspN4I	GGNNCC	2 cut(s)	174, 457
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	2 cut(s)	95, 508
PstNI	CAGNNNCTG	1 cut(s)	482
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	357, 383, 681, 713
SatI	GCNGC	6 cut(s)	88, 91, 121, 483, 486, 654
Sau3AI	GATC	3 cut(s)	409, 429, 688
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	477, 539
SduI	GDGCHC	2 cut(s)	155, 769
SfaNI	GCATC	3 cut(s)	259, 598, 780
SfcI	CTRYAG	2 cut(s)	91, 504
SfoI	GGCGCC	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	285
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	6 cut(s)	262, 320, 335, 450, 602, 609
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	3 cut(s)	87, 167, 233
SspDI	GGCGCC	1 cut(s)	172
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	475, 537
TaaI	ACNGT	3 cut(s)	703, 732, 771
TaiI	ACGT	2 cut(s)	195, 533
TaqI	TCGA	3 cut(s)	201, 428, 446
TasI	AATT	6 cut(s)	262, 320, 335, 450, 602, 609
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	4 cut(s)	357, 383, 681, 713
Tru9I	TTAA	4 cut(s)	357, 383, 681, 713
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	5 cut(s)	90, 120, 482, 485, 653
Tsp45I	GTSAC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	335, 602
XceI	RCATGY	2 cut(s)	249, 501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	666
XspI	CTAG	1 cut(s)	525
ZraI	GACGTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.