Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13450 AT1G13450 AT1G13450 |
| fragaria_vesca | FvH4_6g52740 |
| malus_domestica | MD06G1052100.v1.1 MD17G1017400.v1.1 |
| prunus_persica | Prupe.3G300500_v2.0.a1 |
| pyrus_communis | pycom06g06930 pycom16g09330 pycom17g01400 |
| rosa_chinensis | RchiOBHm_Chr2g0174361 |
| rosa_laevigata | RLG00000022260 |
| rosa_multiflora | Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00078270 |
| rosa_rugosa | Rorug02G0576400 |
| rosa_samantha | Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000 |
| rosa_wichuraiana | Rw2G053840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 848 |
| AccB1I | GGYRCC | 2 cut(s) | 224, 336 |
| AccI | GTMKAC | 1 cut(s) | 303 |
| AccII | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| AclI | AACGTT | 1 cut(s) | 1103 |
| AclWI | GGATC | 2 cut(s) | 723, 981 |
| AcuI | CTGAAG | 1 cut(s) | 1113 |
| AdeI | CACNNNGTG | 1 cut(s) | 399 |
| AfaI | GTAC | 4 cut(s) | 5, 403, 1109, 1223 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 355, 809 |
| AflIII | ACRYGT | 2 cut(s) | 318, 1183 |
| AgeI | ACCGGT | 1 cut(s) | 896 |
| AgsI | TTSAA | 3 cut(s) | 316, 436, 651 |
| AjiI | CACGTC | 2 cut(s) | 255, 321 |
| AjnI | CCWGG | 4 cut(s) | 217, 261, 501, 1224 |
| AluBI | AGCT | 2 cut(s) | 677, 712 |
| AluI | AGCT | 2 cut(s) | 677, 712 |
| Alw21I | GWGCWC | 1 cut(s) | 469 |
| Alw26I | GTCTC | 3 cut(s) | 59, 245, 263 |
| AlwI | GGATC | 2 cut(s) | 723, 981 |
| AoxI | GGCC | 2 cut(s) | 233, 665 |
| ApeKI | GCWGC | 6 cut(s) | 142, 145, 153, 198, 575, 709 |
| AsiGI | ACCGGT | 1 cut(s) | 896 |
| AspLEI | GCGC | 4 cut(s) | 26, 109, 361, 694 |
| AspS9I | GGNCC | 9 cut(s) | 215, 233, 259, 346, 496, 665, 800, 820, 894 |
| AsuC2I | CCSGG | 2 cut(s) | 232, 274 |
| AsuHPI | GGTGA | 4 cut(s) | 106, 107, 740, 911 |
| AsuII | TTCGAA | 2 cut(s) | 985, 1087 |
| AvaII | GGWCC | 7 cut(s) | 215, 259, 346, 496, 800, 820, 894 |
| BanI | GGYRCC | 2 cut(s) | 224, 336 |
| Bbv12I | GWGCWC | 1 cut(s) | 469 |
| BbvI | GCAGC | 6 cut(s) | 154, 157, 165, 210, 562, 721 |
| BccI | CCATC | 3 cut(s) | 73, 884, 1147 |
| BceAI | ACGGC | 2 cut(s) | 11, 572 |
| BciT130I | CCWGG | 4 cut(s) | 219, 263, 503, 1226 |
| BcnI | CCSGG | 2 cut(s) | 232, 274 |
| BcoDI | GTCTC | 3 cut(s) | 59, 245, 263 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfmI | CTRYAG | 1 cut(s) | 1177 |
| BfoI | RGCGCY | 2 cut(s) | 110, 695 |
| BglII | AGATCT | 1 cut(s) | 351 |
| Bme1390I | CCNGG | 6 cut(s) | 219, 232, 263, 274, 503, 1226 |
| Bme18I | GGWCC | 7 cut(s) | 215, 259, 346, 496, 800, 820, 894 |
| BmgBI | CACGTC | 2 cut(s) | 255, 321 |
| BmgT120I | GGNCC | 9 cut(s) | 215, 233, 259, 346, 496, 665, 800, 820, 894 |
| BmiI | GGNNCC | 8 cut(s) | 226, 260, 278, 338, 347, 777, 801, 895 |
| BmrFI | CCNGG | 6 cut(s) | 219, 232, 263, 274, 503, 1226 |
| BmsI | GCATC | 1 cut(s) | 745 |
| BoxI | GACNNNNGTC | 1 cut(s) | 257 |
| BpmI | CTGGAG | 2 cut(s) | 485, 811 |
| Bpu14I | TTCGAA | 2 cut(s) | 985, 1087 |
| BpuEI | CTTGAG | 2 cut(s) | 410, 662 |
| BpuMI | CCSGG | 2 cut(s) | 232, 274 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 4 cut(s) | 750, 782, 1144, 1225 |
| BsaWI | WCCGGW | 1 cut(s) | 896 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 784, 814 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 355, 809 |
| Bse118I | RCCGGY | 1 cut(s) | 896 |
| Bse1I | ACTGG | 1 cut(s) | 794 |
| Bse3DI | GCAATG | 1 cut(s) | 1224 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseBI | CCWGG | 4 cut(s) | 219, 263, 503, 1226 |
| BseDI | CCNNGG | 4 cut(s) | 750, 782, 1144, 1225 |
| BseGI | GGATG | 4 cut(s) | 369, 760, 973, 1123 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 355, 809 |
| BseMI | GCAATG | 1 cut(s) | 1224 |
| BseMII | CTCAG | 2 cut(s) | 526, 1104 |
| BseNI | ACTGG | 1 cut(s) | 794 |
| BseRI | GAGGAG | 4 cut(s) | 60, 185, 281, 588 |
| BseXI | GCAGC | 6 cut(s) | 154, 157, 165, 210, 562, 721 |
| Bsh1236I | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| Bsh1285I | CGRYCG | 3 cut(s) | 385, 389, 689 |
| BshFI | GGCC | 2 cut(s) | 235, 667 |
| BshNI | GGYRCC | 2 cut(s) | 224, 336 |
| BshTI | ACCGGT | 1 cut(s) | 896 |
| BsiEI | CGRYCG | 3 cut(s) | 385, 389, 689 |
| BsiHKAI | GWGCWC | 1 cut(s) | 469 |
| BsiSI | CCGG | 3 cut(s) | 231, 274, 897 |
| BslFI | GGGAC | 2 cut(s) | 359, 907 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 355, 809 |
| BsmAI | GTCTC | 3 cut(s) | 59, 245, 263 |
| BsmBI | CGTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 2 cut(s) | 359, 907 |
| BsnI | GGCC | 2 cut(s) | 235, 667 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp119I | TTCGAA | 2 cut(s) | 985, 1087 |
| Bsp1286I | GDGCHC | 1 cut(s) | 469 |
| Bsp1407I | TGTACA | 1 cut(s) | 1107 |
| Bsp143I | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| BspANI | GGCC | 2 cut(s) | 235, 667 |
| BspCNI | CTCAG | 2 cut(s) | 525, 1105 |
| BspFNI | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| BspLI | GGNNCC | 8 cut(s) | 226, 260, 278, 338, 347, 777, 801, 895 |
| BspPI | GGATC | 2 cut(s) | 723, 981 |
| BspT104I | TTCGAA | 2 cut(s) | 985, 1087 |
| BspT107I | GGYRCC | 2 cut(s) | 224, 336 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrDI | GCAATG | 1 cut(s) | 1224 |
| BsrFI | RCCGGY | 1 cut(s) | 896 |
| BsrGI | TGTACA | 1 cut(s) | 1107 |
| BsrI | ACTGG | 1 cut(s) | 794 |
| BssAI | RCCGGY | 1 cut(s) | 896 |
| BssECI | CCNNGG | 4 cut(s) | 750, 782, 1144, 1225 |
| BssMI | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| BssT1I | CCWWGG | 1 cut(s) | 782 |
| Bst2UI | CCWGG | 4 cut(s) | 219, 263, 503, 1226 |
| Bst4CI | ACNGT | 2 cut(s) | 836, 853 |
| BstAUI | TGTACA | 1 cut(s) | 1107 |
| BstBI | TTCGAA | 2 cut(s) | 985, 1087 |
| BstC8I | GCNNGC | 4 cut(s) | 445, 738, 951, 1141 |
| BstDEI | CTNAG | 4 cut(s) | 477, 512, 945, 1113 |
| BstDSI | CCRYGG | 1 cut(s) | 750 |
| BstEII | GGTNACC | 1 cut(s) | 728 |
| BstF5I | GGATG | 4 cut(s) | 369, 760, 973, 1123 |
| BstFNI | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| BstH2I | RGCGCY | 2 cut(s) | 110, 695 |
| BstHHI | GCGC | 4 cut(s) | 26, 109, 361, 694 |
| BstKTI | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| BstMAI | GTCTC | 3 cut(s) | 59, 245, 263 |
| BstMBI | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| BstMCI | CGRYCG | 3 cut(s) | 385, 389, 689 |
| BstNI | CCWGG | 4 cut(s) | 219, 263, 503, 1226 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 257 |
| BstPI | GGTNACC | 1 cut(s) | 728 |
| BstSCI | CCNGG | 6 cut(s) | 217, 230, 261, 272, 501, 1224 |
| BstSFI | CTRYAG | 1 cut(s) | 1177 |
| BstUI | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| BstV1I | GCAGC | 6 cut(s) | 154, 157, 165, 210, 562, 721 |
| BstX2I | RGATCY | 1 cut(s) | 351 |
| BstYI | RGATCY | 1 cut(s) | 351 |
| BsuRI | GGCC | 2 cut(s) | 235, 667 |
| BtgI | CCRYGG | 1 cut(s) | 750 |
| BtrI | CACGTC | 2 cut(s) | 255, 321 |
| BtsCI | GGATG | 4 cut(s) | 369, 760, 973, 1123 |
| BtsIMutI | CAGTG | 1 cut(s) | 1110 |
| Cac8I | GCNNGC | 4 cut(s) | 445, 738, 951, 1141 |
| CfoI | GCGC | 4 cut(s) | 26, 109, 361, 694 |
| Cfr10I | RCCGGY | 1 cut(s) | 896 |
| Cfr13I | GGNCC | 9 cut(s) | 215, 233, 259, 346, 496, 665, 800, 820, 894 |
| Cfr42I | CCGCGG | 1 cut(s) | 753 |
| CseI | GACGC | 1 cut(s) | 1191 |
| Csp6I | GTAC | 4 cut(s) | 4, 402, 1108, 1222 |
| CspAI | ACCGGT | 1 cut(s) | 896 |
| CviAII | CATG | 1 cut(s) | 397 |
| CviQI | GTAC | 4 cut(s) | 4, 402, 1108, 1222 |
| DdeI | CTNAG | 4 cut(s) | 477, 512, 945, 1113 |
| DpnI | GATC | 8 cut(s) | 353, 388, 519, 688, 717, 920, 975, 1203 |
| DpnII | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| DraIII | CACNNNGTG | 1 cut(s) | 399 |
| EciI | GGCGGA | 3 cut(s) | 263, 430, 529 |
| Eco130I | CCWWGG | 1 cut(s) | 782 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| Eco47I | GGWCC | 7 cut(s) | 215, 259, 346, 496, 800, 820, 894 |
| Eco57I | CTGAAG | 1 cut(s) | 1113 |
| Eco91I | GGTNACC | 1 cut(s) | 728 |
| EcoO109I | RGGNCCY | 2 cut(s) | 496, 800 |
| EcoO65I | GGTNACC | 1 cut(s) | 728 |
| EcoRII | CCWGG | 4 cut(s) | 217, 261, 501, 1224 |
| EcoT14I | CCWWGG | 1 cut(s) | 782 |
| ErhI | CCWWGG | 1 cut(s) | 782 |
| Esp3I | CGTCTC | 1 cut(s) | 245 |
| FaeI | CATG | 1 cut(s) | 400 |
| FaiI | YATR | 6 cut(s) | 37, 398, 671, 848, 1004, 1082 |
| FaqI | GGGAC | 2 cut(s) | 359, 907 |
| FatI | CATG | 1 cut(s) | 396 |
| FauI | CCCGC | 3 cut(s) | 29, 741, 942 |
| FblI | GTMKAC | 1 cut(s) | 303 |
| FokI | GGATG | 4 cut(s) | 376, 767, 980, 1130 |
| FspBI | CTAG | 1 cut(s) | 53 |
| GlaI | GCGC | 4 cut(s) | 25, 108, 360, 693 |
| GsuI | CTGGAG | 2 cut(s) | 485, 811 |
| HaeII | RGCGCY | 2 cut(s) | 110, 695 |
| HaeIII | GGCC | 2 cut(s) | 235, 667 |
| HapII | CCGG | 3 cut(s) | 231, 274, 897 |
| HgaI | GACGC | 1 cut(s) | 1191 |
| HhaI | GCGC | 4 cut(s) | 26, 109, 361, 694 |
| Hin1II | CATG | 1 cut(s) | 400 |
| Hin6I | GCGC | 4 cut(s) | 24, 107, 359, 692 |
| HinP1I | GCGC | 4 cut(s) | 24, 107, 359, 692 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HinfI | GANTC | 3 cut(s) | 611, 647, 1070 |
| HpaII | CCGG | 3 cut(s) | 231, 274, 897 |
| HphI | GGTGA | 4 cut(s) | 106, 107, 740, 911 |
| Hpy166II | GTNNAC | 5 cut(s) | 31, 304, 402, 1110, 1246 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 515, 631, 935, 1075 |
| Hpy188III | TCNNGA | 6 cut(s) | 436, 641, 719, 803, 992, 1127 |
| Hpy8I | GTNNAC | 5 cut(s) | 31, 304, 402, 1110, 1246 |
| HpyAV | CCTTC | 4 cut(s) | 433, 834, 870, 1031 |
| HpyCH4III | ACNGT | 2 cut(s) | 836, 853 |
| HpyCH4IV | ACGT | 3 cut(s) | 254, 320, 1103 |
| HpyCH4V | TGCA | 4 cut(s) | 758, 764, 1139, 1217 |
| HpyF3I | CTNAG | 4 cut(s) | 477, 512, 945, 1113 |
| HpySE526I | ACGT | 3 cut(s) | 254, 320, 1103 |
| Hsp92II | CATG | 1 cut(s) | 400 |
| HspAI | GCGC | 4 cut(s) | 24, 107, 359, 692 |
| KspI | CCGCGG | 1 cut(s) | 753 |
| Kzo9I | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| LmnI | GCTCC | 2 cut(s) | 172, 276 |
| Lsp1109I | GCAGC | 6 cut(s) | 154, 157, 165, 210, 562, 721 |
| LweI | GCATC | 1 cut(s) | 745 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MaeII | ACGT | 3 cut(s) | 254, 320, 1103 |
| MaeIII | GTNAC | 1 cut(s) | 728 |
| MalI | GATC | 8 cut(s) | 353, 388, 519, 688, 717, 920, 975, 1203 |
| MboI | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| MboII | GAAGA | 5 cut(s) | 68, 250, 819, 1106, 1196 |
| MflI | RGATCY | 1 cut(s) | 351 |
| MhlI | GDGCHC | 1 cut(s) | 469 |
| MluI | ACGCGT | 1 cut(s) | 1183 |
| MlyI | GAGTC | 1 cut(s) | 1064 |
| MmeI | TCCRAC | 3 cut(s) | 354, 558, 942 |
| MseI | TTAA | 5 cut(s) | 456, 855, 909, 1050, 1169 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1212 |
| MspA1I | CMGCKG | 4 cut(s) | 156, 712, 726, 752 |
| MspI | CCGG | 3 cut(s) | 231, 274, 897 |
| MspR9I | CCNGG | 6 cut(s) | 219, 232, 263, 274, 503, 1226 |
| MvaI | CCWGG | 4 cut(s) | 219, 263, 503, 1226 |
| MvnI | CGCG | 4 cut(s) | 24, 361, 752, 1185 |
| NciI | CCSGG | 2 cut(s) | 232, 274 |
| NdeII | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| NlaIII | CATG | 1 cut(s) | 400 |
| NlaIV | GGNNCC | 8 cut(s) | 226, 260, 278, 338, 347, 777, 801, 895 |
| NmeAIII | GCCGAG | 2 cut(s) | 335, 1169 |
| NmuCI | GTSAC | 1 cut(s) | 728 |
| NspV | TTCGAA | 2 cut(s) | 985, 1087 |
| PfeI | GAWTC | 2 cut(s) | 611, 647 |
| PfoI | TCCNGGA | 2 cut(s) | 261, 501 |
| PinAI | ACCGGT | 1 cut(s) | 896 |
| Ple19I | CGATCG | 2 cut(s) | 389, 689 |
| PleI | GAGTC | 1 cut(s) | 1064 |
| PpsI | GAGTC | 1 cut(s) | 1064 |
| PpuMI | RGGWCCY | 2 cut(s) | 496, 800 |
| PshAI | GACNNNNGTC | 1 cut(s) | 257 |
| PsiI | TTATAA | 1 cut(s) | 848 |
| Psp1406I | AACGTT | 1 cut(s) | 1103 |
| Psp5II | RGGWCCY | 2 cut(s) | 496, 800 |
| Psp6I | CCWGG | 4 cut(s) | 217, 261, 501, 1224 |
| PspEI | GGTNACC | 1 cut(s) | 728 |
| PspGI | CCWGG | 4 cut(s) | 217, 261, 501, 1224 |
| PspN4I | GGNNCC | 8 cut(s) | 226, 260, 278, 338, 347, 777, 801, 895 |
| PspPI | GGNCC | 9 cut(s) | 215, 233, 259, 346, 496, 665, 800, 820, 894 |
| PspPPI | RGGWCCY | 2 cut(s) | 496, 800 |
| PsuI | RGATCY | 1 cut(s) | 351 |
| PvuI | CGATCG | 2 cut(s) | 389, 689 |
| PvuII | CAGCTG | 1 cut(s) | 712 |
| RsaI | GTAC | 4 cut(s) | 5, 403, 1109, 1223 |
| RsaNI | GTAC | 4 cut(s) | 4, 402, 1108, 1222 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1212 |
| SacII | CCGCGG | 1 cut(s) | 753 |
| SaqAI | TTAA | 5 cut(s) | 456, 855, 909, 1050, 1169 |
| Sau3AI | GATC | 8 cut(s) | 351, 386, 517, 686, 715, 918, 973, 1201 |
| Sau96I | GGNCC | 9 cut(s) | 215, 233, 259, 346, 496, 665, 800, 820, 894 |
| SchI | GAGTC | 1 cut(s) | 1064 |
| ScrFI | CCNGG | 6 cut(s) | 219, 232, 263, 274, 503, 1226 |
| SduI | GDGCHC | 1 cut(s) | 469 |
| SfaNI | GCATC | 1 cut(s) | 745 |
| SfcI | CTRYAG | 1 cut(s) | 1177 |
| Sfr303I | CCGCGG | 1 cut(s) | 753 |
| SfuI | TTCGAA | 2 cut(s) | 985, 1087 |
| SgrBI | CCGCGG | 1 cut(s) | 753 |
| SinI | GGWCC | 7 cut(s) | 215, 259, 346, 496, 800, 820, 894 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1212 |
| SmlI | CTYRAG | 2 cut(s) | 425, 641 |
| SmoI | CTYRAG | 2 cut(s) | 425, 641 |
| SspMI | CTAG | 1 cut(s) | 53 |
| StyD4I | CCNGG | 6 cut(s) | 217, 230, 261, 272, 501, 1224 |
| StyI | CCWWGG | 1 cut(s) | 782 |
| TaaI | ACNGT | 2 cut(s) | 836, 853 |
| TaiI | ACGT | 3 cut(s) | 257, 323, 1106 |
| TaqI | TCGA | 4 cut(s) | 381, 622, 985, 1087 |
| TaqII | GACCGA | 2 cut(s) | 399, 699 |
| TatI | WGTACW | 1 cut(s) | 1107 |
| TauI | GCSGC | 7 cut(s) | 92, 191, 230, 581, 584, 587, 752 |
| TfiI | GAWTC | 2 cut(s) | 611, 647 |
| Tru1I | TTAA | 5 cut(s) | 456, 855, 909, 1050, 1169 |
| Tru9I | TTAA | 5 cut(s) | 456, 855, 909, 1050, 1169 |
| TscAI | CASTG | 1 cut(s) | 1117 |
| TseFI | GTSAC | 1 cut(s) | 728 |
| TseI | GCWGC | 6 cut(s) | 142, 145, 153, 198, 575, 709 |
| Tsp45I | GTSAC | 1 cut(s) | 728 |
| TspDTI | ATGAA | 1 cut(s) | 1196 |
| TspGWI | ACGGA | 2 cut(s) | 77, 419 |
| TspRI | CASTG | 1 cut(s) | 1117 |
| VpaK11BI | GGWCC | 7 cut(s) | 215, 259, 346, 496, 800, 820, 894 |
| XmiI | GTMKAC | 1 cut(s) | 303 |
| XspI | CTAG | 1 cut(s) | 53 |