Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Forward (+)

2888114 .. 2889454

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCTGAATCTCGAGCTTCTGGAATGGTCGATCAATACCATGGGATGGATAGAAGGTCAAGGCTACGAGTTGCTTCTTCATGCAATTGATACATTCAATGCCAATGTTGTCTTAGTTCTGGGCCAGGAAAAACTTTGGAGCATGATCAGAAATGTGCTAAAGAACAAGCCTGGTGTGGACGTTGTAAAACTTCAAAAATCTGGGGGTGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAATATTTCTATGGCCTTGCAAATGATCTGAGCCCACATTCTAACATCGCAAACTTTAGTGACTTTTCTGTCTTTCGAATTGGTGGCGGGCCACAGGCCCCACGTTCAGCTTTGCCAATTGGTGCAGAGCCTGCTGCAGACCCTCTAAGATTGGCACCTGTGAATATTAACCGGGATTTGCTGCATACCATTCTCGCTGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGTAATGTTGCTGGGTTTGTCTTTGTCACAGACATCGACATTCAGAGGAAGACAATTACATACCTTGCACCGTCGGCGGGTGAGCTTCCAAGCAAGTATTTGATCGCGGGAACCGTGACTTGGCTCGAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

210

Amino Acids

23.1

Weight (kDa)

8.86

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_P	PF16575	11 - 92	1.5e-23	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	97 - 208	5.1e-34	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccII	CGCG	1 cut(s)	602
AciI	CCGC	3 cut(s)	348, 572, 602
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	45, 572, 615
AgsI	TTSAA	2 cut(s)	97, 194
AjnI	CCWGG	4 cut(s)	123, 169, 215, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	3 cut(s)	16, 371, 580
AluI	AGCT	3 cut(s)	16, 371, 580
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	4 cut(s)	121, 274, 350, 357
ApeKI	GCWGC	2 cut(s)	395, 442
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	121, 350, 358
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	382, 429
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	4 cut(s)	125, 171, 217, 244
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	2 cut(s)	144, 481
BcnI	CCSGG	1 cut(s)	434
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	396, 443
BlsI	GCNGC	2 cut(s)	397, 444
Bme1390I	CCNGG	5 cut(s)	125, 171, 217, 244, 434
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	121, 350, 358
BmiI	GGNNCC	4 cut(s)	360, 417, 477, 607
BmrFI	CCNGG	5 cut(s)	125, 171, 217, 244, 434
BpiI	GAAGAC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	39, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 572, 615
BseBI	CCWGG	4 cut(s)	125, 171, 217, 244
BseDI	CCNNGG	2 cut(s)	39, 471
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	45, 572, 615
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	382, 429
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	4 cut(s)	123, 276, 352, 359
BshNI	GGYRCC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	45, 572, 615
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	123, 276, 352, 359
BsoBI	CYCGRG	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	30, 144, 286, 481, 597
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	348, 572, 602
BspANI	GGCC	4 cut(s)	123, 276, 352, 359
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	4 cut(s)	360, 417, 477, 607
BspMAI	CTGCAG	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	39, 471
BssMI	GATC	5 cut(s)	30, 144, 286, 481, 597
BssT1I	CCWWGG	2 cut(s)	39, 471
Bst2UI	CCWGG	4 cut(s)	125, 171, 217, 244
Bst4CI	ACNGT	2 cut(s)	567, 610
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	350, 393
BstDEI	CTNAG	3 cut(s)	112, 290, 407
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	602
BstKTI	GATC	5 cut(s)	33, 147, 289, 484, 600
BstMBI	GATC	5 cut(s)	30, 144, 286, 481, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 569
BstNI	CCWGG	4 cut(s)	125, 171, 217, 244
BstSCI	CCNGG	5 cut(s)	123, 169, 215, 242, 432
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	2 cut(s)	382, 429
BstV2I	GAAGAC	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	4 cut(s)	123, 276, 352, 359
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	350, 393
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	3 cut(s)	121, 350, 358
CviAII	CATG	3 cut(s)	40, 80, 142
DdeI	CTNAG	3 cut(s)	112, 290, 407
DpnI	GATC	5 cut(s)	32, 146, 288, 483, 599
DpnII	GATC	5 cut(s)	30, 144, 286, 481, 597
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	39, 471
Eco24I	GRGCYC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	4 cut(s)	123, 169, 215, 242
EcoT14I	CCWWGG	2 cut(s)	39, 471
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	39, 471
FaeI	CATG	3 cut(s)	43, 83, 145
FaiI	YATR	7 cut(s)	41, 81, 143, 252, 273, 447, 556
FatI	CATG	3 cut(s)	39, 79, 141
FauI	CCCGC	3 cut(s)	341, 565, 595
FbaI	TGATCA	2 cut(s)	144, 481
Fnu4HI	GCNGC	2 cut(s)	396, 443
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	396, 443
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	2 cut(s)	396, 443
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	123, 276, 352, 359
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	3 cut(s)	43, 83, 145
HinfI	GANTC	2 cut(s)	7, 247
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	149, 291, 540
Hpy188III	TCNNGA	2 cut(s)	11, 20
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	567, 610
HpyCH4IV	ACGT	3 cut(s)	180, 364, 626
HpyCH4V	TGCA	6 cut(s)	83, 281, 386, 398, 445, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 569
HpyF3I	CTNAG	3 cut(s)	112, 290, 407
HpySE526I	ACGT	3 cut(s)	180, 364, 626
Hsp92II	CATG	3 cut(s)	43, 83, 145
Ksp22I	TGATCA	2 cut(s)	144, 481
Kzo9I	GATC	5 cut(s)	30, 144, 286, 481, 597
LmnI	GCTCC	2 cut(s)	138, 475
Lsp1109I	GCAGC	2 cut(s)	382, 429
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	3 cut(s)	180, 364, 626
MaeIII	GTNAC	3 cut(s)	320, 520, 610
MalI	GATC	5 cut(s)	32, 146, 288, 483, 599
MboI	GATC	5 cut(s)	30, 144, 286, 481, 597
MboII	GAAGA	2 cut(s)	68, 556
MfeI	CAATTG	2 cut(s)	84, 378
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	6 cut(s)	84, 227, 339, 378, 486, 549
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	414, 534
MseI	TTAA	1 cut(s)	429
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	5 cut(s)	125, 171, 217, 244, 434
MunI	CAATTG	2 cut(s)	84, 378
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	4 cut(s)	125, 171, 217, 244
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	392, 569
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	30, 144, 286, 481, 597
NlaIII	CATG	3 cut(s)	43, 83, 145
NlaIV	GGNNCC	4 cut(s)	360, 417, 477, 607
NmuCI	GTSAC	3 cut(s)	320, 520, 610
NspV	TTCGAA	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	45
PfoI	TCCNGGA	2 cut(s)	215, 242
PkrI	GCNGC	2 cut(s)	397, 444
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp6I	CCWGG	4 cut(s)	123, 169, 215, 242
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	123, 169, 215, 242
PspN4I	GGNNCC	4 cut(s)	360, 417, 477, 607
PspPI	GGNCC	3 cut(s)	121, 350, 358
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	396, 443
Sau3AI	GATC	5 cut(s)	30, 144, 286, 481, 597
Sau96I	GGNCC	3 cut(s)	121, 350, 358
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	5 cut(s)	125, 171, 217, 244, 434
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	18, 58, 183, 367, 373, 421, 561, 582, 629
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	11
SfuI	TTCGAA	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	6 cut(s)	84, 227, 339, 378, 486, 549
SsiI	CCGC	3 cut(s)	348, 572, 602
SspI	AATATT	2 cut(s)	266, 427
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	5 cut(s)	123, 169, 215, 242, 432
StyI	CCWWGG	2 cut(s)	39, 471
TaaI	ACNGT	2 cut(s)	567, 610
TaiI	ACGT	3 cut(s)	183, 367, 629
TaqI	TCGA	5 cut(s)	12, 29, 337, 531, 621
TasI	AATT	6 cut(s)	84, 227, 339, 378, 486, 549
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	3 cut(s)	320, 520, 610
TseI	GCWGC	2 cut(s)	395, 442
Tsp45I	GTSAC	3 cut(s)	320, 520, 610
TspDTI	ATGAA	2 cut(s)	68, 453
TspGWI	ACGGA	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	11
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.