Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

3166648 .. 3167697

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATATAACCCCTCCCATCACCACCACCACCAACACCGCCAGCACCAAATCCCCGGAAGCAGACAGCGAAACTCCGACACGGATCCAGCAACCCATAAAGCCTCTGTCCTTCGGCAACGGCGTCCTCAAGCGTCACAACCCCACCCACCACCTCCACCACCACAACATCCCCATCACCCCTGTTGTAGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCACGCTGGGCGGCCATGCCCTCGACGGCTGCGGCGAGTTTATGCCGTCTCCCACCGCCAACTCCGCCGACCCCACCTCTCTAAAATGCGCTGCATGTGGCTGCCACCGTAATTTTCACCGCCGGGACCCCGAGGACCCCTTGCAGCCAAATACCCCCGCCGCTACAACGCATGTGATCGAGTATCAGCCACACCACCGCCACCACCCTCCGCCGCCGACTCACCCAGGCAACCGCAGCCCCAACTCAGCTTCTCCGCCGCCGATCTCGTCCTCGTACTACCCCTCCGCCCCCCACATGCTCCTGGCTCTGTCCACTGCTCACGAAAACGGCTTAGTGGGTGTGAATAACCACGCCGCCGTCATGCCCCCGATCGTGTCGCCGAGCACGAACGCAAGGAAGCGGTTCAGGACCAAGTTCACCCAGGACCAGAAAGATAAGATGCACCAATTCGCAGAGAGGGTCGGTTGGAAGATGCAGAAGAGAGACGAGGAAATCGTACAGGAGTTCTGCAATGAGGCCGGCGTCGAAAAAGGTGTTCTCAAAGTCTGGATGCACAACAACAAGAACACCTTCACCAAGCGAGACGTGCTAAATGGCGGCGGTGCTGGTGGTGGTCTAGGTAGACCCAACTTTCTACTGCAGCAGACCCACCACCACAATGGCACCAACGGCAACGGAAACGGAAACAACAACGATGACGAGGACGAGGACGATGATGATGATCAAAACGACAACGACGACAATAAAAACGGAGTTCCGAATCCGAATCATCATTACCAGGGTGCTGACGGTGGTGCCAACAATGGATCGTCGTCGTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

350

Amino Acids

38.01

Weight (kDa)

6.5

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	64 - 118	2.5e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	887, 1019
AccI	GTMKAC	1 cut(s)	847
AclWI	GGATC	3 cut(s)	79, 92, 1039
AcoI	YGGCCR	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	123, 747
AfaI	GTAC	2 cut(s)	500, 723
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	4 cut(s)	448, 525, 645, 1002
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	1 cut(s)	611
Alw26I	GTCTC	3 cut(s)	276, 702, 801
AlwI	GGATC	3 cut(s)	79, 92, 1039
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	235, 741
ApeKI	GCWGC	6 cut(s)	252, 314, 324, 367, 459, 865
Asp700I	GAANNNNTTC	2 cut(s)	626, 794
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	4 cut(s)	349, 358, 633, 649
AsuC2I	CCSGG	2 cut(s)	56, 347
AsuHPI	GGTGA	7 cut(s)	13, 169, 184, 332, 437, 634, 790
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	4 cut(s)	349, 358, 633, 649
BamHI	GGATCC	1 cut(s)	84
BanI	GGYRCC	2 cut(s)	887, 1019
BbsI	GAAGAC	1 cut(s)	1035
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	6 cut(s)	239, 301, 311, 379, 471, 877
BccI	CCATC	2 cut(s)	26, 182
BceAI	ACGGC	6 cut(s)	136, 253, 265, 566, 568, 910
BciT130I	CCWGG	4 cut(s)	450, 527, 647, 1004
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	2 cut(s)	56, 347
BcoDI	GTCTC	3 cut(s)	276, 702, 801
BfaI	CTAG	1 cut(s)	842
BfmI	CTRYAG	1 cut(s)	863
Bme1390I	CCNGG	6 cut(s)	56, 347, 450, 527, 647, 1004
Bme18I	GGWCC	4 cut(s)	349, 358, 633, 649
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	4 cut(s)	349, 358, 633, 649
BmiI	GGNNCC	6 cut(s)	86, 350, 351, 360, 889, 1021
BmrFI	CCNGG	6 cut(s)	56, 347, 450, 527, 647, 1004
BmsI	GCATC	3 cut(s)	654, 687, 765
BpiI	GAAGAC	1 cut(s)	1035
BpuEI	CTTGAG	2 cut(s)	113, 194
BpuMI	CCSGG	2 cut(s)	56, 347
BsaBI	GATNNNNATC	1 cut(s)	945
BsaHI	GRCGYC	2 cut(s)	123, 747
BsaJI	CCNNGG	5 cut(s)	54, 354, 448, 645, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bse118I	RCCGGY	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	742
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	4 cut(s)	450, 527, 647, 1004
BseDI	CCNNGG	5 cut(s)	54, 354, 448, 645, 1003
BseGI	GGATG	2 cut(s)	168, 780
BseJI	GATNNNNATC	1 cut(s)	945
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	1 cut(s)	483
BseXI	GCAGC	6 cut(s)	239, 301, 311, 379, 471, 877
BseYI	CCCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	237, 743
BshNI	GGYRCC	2 cut(s)	887, 1019
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	56, 346, 744
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	3 cut(s)	276, 702, 801
BsmBI	CGTCTC	3 cut(s)	276, 702, 801
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	237, 743
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
BspANI	GGCC	2 cut(s)	237, 743
BspCNI	CTCAG	1 cut(s)	482
BspLI	GGNNCC	6 cut(s)	86, 350, 351, 360, 889, 1021
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	3 cut(s)	79, 92, 1039
BspT107I	GGYRCC	2 cut(s)	887, 1019
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	1 cut(s)	743
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	5 cut(s)	54, 354, 448, 645, 1003
BssMI	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
BssNI	GRCGYC	2 cut(s)	123, 747
Bst2UI	CCWGG	4 cut(s)	450, 527, 647, 1004
Bst4CI	ACNGT	2 cut(s)	332, 1016
Bst6I	CTCTTC	1 cut(s)	698
BstACI	GRCGYC	2 cut(s)	123, 747
BstC8I	GCNNGC	2 cut(s)	43, 745
BstDEI	CTNAG	2 cut(s)	469, 556
BstF5I	GGATG	2 cut(s)	168, 780
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	6 cut(s)	87, 402, 489, 597, 949, 1034
BstMAI	GTCTC	3 cut(s)	276, 702, 801
BstMBI	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 459, 811, 894
BstNI	CCWGG	4 cut(s)	450, 527, 647, 1004
BstNSI	RCATGY	3 cut(s)	321, 398, 523
BstSCI	CCNGG	6 cut(s)	54, 345, 448, 525, 645, 1002
BstSFI	CTRYAG	1 cut(s)	863
BstV1I	GCAGC	6 cut(s)	239, 301, 311, 379, 471, 877
BstV2I	GAAGAC	1 cut(s)	1035
BstX2I	RGATCY	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	237, 743
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	2 cut(s)	168, 780
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	43, 745
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	4 cut(s)	349, 358, 633, 649
CseI	GACGC	3 cut(s)	112, 122, 736
Csp6I	GTAC	2 cut(s)	499, 722
CviAII	CATG	5 cut(s)	239, 318, 395, 520, 586
CviQI	GTAC	2 cut(s)	499, 722
DdeI	CTNAG	2 cut(s)	469, 556
DpnI	GATC	6 cut(s)	86, 401, 488, 596, 948, 1033
DpnII	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
EciI	GGCGGA	4 cut(s)	277, 423, 468, 499
Eco47I	GGWCC	4 cut(s)	349, 358, 633, 649
Eco88I	CYCGRG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	349, 358
EcoRII	CCWGG	4 cut(s)	448, 525, 645, 1002
Esp3I	CGTCTC	3 cut(s)	276, 702, 801
FaeI	CATG	5 cut(s)	242, 321, 398, 523, 589
FaiI	YATR	8 cut(s)	8, 98, 240, 266, 319, 396, 521, 587
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	5 cut(s)	238, 317, 394, 519, 585
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	847
FokI	GGATG	2 cut(s)	155, 787
FspBI	CTAG	1 cut(s)	842
GlaI	GCGC	1 cut(s)	313
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	237, 743
HapII	CCGG	3 cut(s)	56, 346, 744
HgaI	GACGC	3 cut(s)	112, 122, 736
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	2 cut(s)	123, 747
Hin1II	CATG	5 cut(s)	242, 321, 398, 523, 589
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	3 cut(s)	442, 985, 991
HpaII	CCGG	3 cut(s)	56, 346, 744
HphI	GGTGA	7 cut(s)	13, 169, 184, 332, 437, 634, 790
Hpy166II	GTNNAC	3 cut(s)	537, 642, 848
Hpy188I	TCNGA	3 cut(s)	78, 984, 990
Hpy188III	TCNNGA	5 cut(s)	211, 545, 631, 772, 1047
Hpy8I	GTNNAC	3 cut(s)	537, 642, 848
Hpy99I	CGWCG	5 cut(s)	251, 752, 965, 1039, 1042
HpyAV	CCTTC	2 cut(s)	121, 805
HpyCH4III	ACNGT	2 cut(s)	332, 1016
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	7 cut(s)	317, 367, 667, 700, 735, 778, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 459, 811, 894
HpyF3I	CTNAG	2 cut(s)	469, 556
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	2 cut(s)	123, 747
Hsp92II	CATG	5 cut(s)	242, 321, 398, 523, 589
HspAI	GCGC	1 cut(s)	312
KflI	GGGWCCC	1 cut(s)	349
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
LmnI	GCTCC	1 cut(s)	528
Lsp1109I	GCAGC	6 cut(s)	239, 301, 311, 379, 471, 877
LweI	GCATC	3 cut(s)	654, 687, 765
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	2 cut(s)	134, 190
MalI	GATC	6 cut(s)	86, 401, 488, 596, 948, 1033
MboI	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
MboII	GAAGA	3 cut(s)	706, 715, 1035
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	2 cut(s)	334, 671
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	101, 671
MroNI	GCCGGC	1 cut(s)	743
MroXI	GAANNNNTTC	2 cut(s)	626, 794
MslI	CAYNNNNRTG	1 cut(s)	882
MspI	CCGG	3 cut(s)	56, 346, 744
MspR9I	CCNGG	6 cut(s)	56, 347, 450, 527, 647, 1004
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	4 cut(s)	450, 527, 647, 1004
MwoI	GCNNNNNNNGC	4 cut(s)	287, 459, 811, 894
NaeI	GCCGGC	1 cut(s)	745
NciI	CCSGG	2 cut(s)	56, 347
NdeII	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	5 cut(s)	242, 321, 398, 523, 589
NlaIV	GGNNCC	6 cut(s)	86, 350, 351, 360, 889, 1021
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	2 cut(s)	134, 190
NspI	RCATGY	3 cut(s)	321, 398, 523
PcsI	WCGNNNNNNNCGW	5 cut(s)	120, 255, 608, 717, 960
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	745
PdmI	GAANNNNTTC	2 cut(s)	626, 794
PfeI	GAWTC	2 cut(s)	985, 991
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PpuMI	RGGWCCY	2 cut(s)	349, 358
Psp5II	RGGWCCY	2 cut(s)	349, 358
Psp6I	CCWGG	4 cut(s)	448, 525, 645, 1002
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	4 cut(s)	448, 525, 645, 1002
PspN4I	GGNNCC	6 cut(s)	86, 350, 351, 360, 889, 1021
PspPI	GGNCC	4 cut(s)	349, 358, 633, 649
PspPPI	RGGWCCY	2 cut(s)	349, 358
PstI	CTGCAG	1 cut(s)	867
PsuI	RGATCY	1 cut(s)	84
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	2 cut(s)	500, 723
RsaNI	GTAC	2 cut(s)	499, 722
RseI	CAYNNNNRTG	1 cut(s)	882
Sau3AI	GATC	6 cut(s)	84, 399, 486, 594, 946, 1031
Sau96I	GGNCC	4 cut(s)	349, 358, 633, 649
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	6 cut(s)	56, 347, 450, 527, 647, 1004
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	8 cut(s)	156, 197, 302, 475, 760, 797, 813, 847
SfaNI	GCATC	3 cut(s)	654, 687, 765
SfcI	CTRYAG	1 cut(s)	863
SinI	GGWCC	4 cut(s)	349, 358, 633, 649
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	2 cut(s)	128, 209
SmoI	CTYRAG	2 cut(s)	128, 209
Sse9I	AATT	2 cut(s)	334, 671
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	6 cut(s)	54, 345, 448, 525, 645, 1002
TaaI	ACNGT	2 cut(s)	332, 1016
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	246, 402, 750
TasI	AATT	2 cut(s)	334, 671
TauI	GCSGC	8 cut(s)	224, 237, 258, 386, 439, 484, 581, 825
TfiI	GAWTC	2 cut(s)	985, 991
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	134, 190
TseI	GCWGC	6 cut(s)	252, 314, 324, 367, 459, 865
Tsp45I	GTSAC	2 cut(s)	134, 190
TspGWI	ACGGA	4 cut(s)	97, 915, 921, 990
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	4 cut(s)	349, 358, 633, 649
XceI	RCATGY	3 cut(s)	321, 398, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	847
XmnI	GAANNNNTTC	2 cut(s)	626, 794
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.