Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

3304903 .. 3305989

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGTGGGGCTTGTGGGTATGGGAACCTCTACAGCCAGGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCATTGTTCAACAATGGCTTGACCTGTGGAGCACGCTATCAGATCAGGTGTGTGAATGACCCACAGTGGTGCCTCCCTGGCTCCATCATAGTCACTGCCACAAACTTTTGCCCACCAGGTGGCTGGTGCGACCCTCCCCAGCAACACTTCGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCCCAATACAAAGCTGGGGTTGTCCCAGTGTCCTACAGAAGGGTTAGATGCAGGAGAAGAGGAGGCATAAGGTTCACTGTGAATGGACACTCTTACTTCAACTTAGTCCTTGTGACAAACGTCGGTGGTGCTGGAGATGTGCAATCTGTGGCCATCAAGGGCTCCAGGACTCGGTGGCAAGCAATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTATTGTGACCACCAGTGATGGCCGCAGATTGGTTTCTTACAATGTTGCCCCTCCTAATTGGTCATTTGGTCAGACATATACTGGGAGACAGTTTCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

201

Amino Acids

22.1

Weight (kDa)

9.89

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	19 - 96	6.5e-23	Lytic transglycolase
Expansin_C	PF01357	107 - 184	7.1e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	2 cut(s)	247, 523
AcoI	YGGCCR	2 cut(s)	402, 520
AdeI	CACNNNGTG	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	191, 291, 423, 529
AgsI	TTSAA	2 cut(s)	82, 352
AjnI	CCWGG	4 cut(s)	36, 148, 187, 416
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	62, 266
AluI	AGCT	2 cut(s)	62, 266
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	580
AoxI	GGCC	3 cut(s)	402, 451, 520
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	164, 413, 512
BciT130I	CCWGG	4 cut(s)	38, 150, 189, 418
BcoDI	GTCTC	1 cut(s)	580
BfmI	CTRYAG	2 cut(s)	31, 286
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	60, 523
BlsI	GCNGC	2 cut(s)	61, 524
Bme1390I	CCNGG	4 cut(s)	38, 150, 189, 418
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	5 cut(s)	26, 143, 154, 415, 452
BmrFI	CCNGG	4 cut(s)	38, 150, 189, 418
BmrI	ACTGGG	3 cut(s)	272, 457, 591
BmsI	GCATC	1 cut(s)	290
BmuI	ACTGGG	3 cut(s)	272, 457, 591
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	2 cut(s)	400, 405
BsaJI	CCNNGG	2 cut(s)	37, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 291, 423, 529
Bse1I	ACTGG	5 cut(s)	278, 452, 464, 513, 586
Bse3DI	GCAATG	2 cut(s)	249, 441
BseBI	CCWGG	4 cut(s)	38, 150, 189, 418
BseDI	CCNNGG	2 cut(s)	37, 148
BseLI	CCNNNNNNNGG	4 cut(s)	191, 291, 423, 529
BseMI	GCAATG	2 cut(s)	249, 441
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	5 cut(s)	278, 452, 464, 513, 586
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	2 cut(s)	210, 266
BshFI	GGCC	3 cut(s)	404, 453, 522
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	61, 260
BslI	CCNNNNNNNGG	4 cut(s)	191, 291, 423, 529
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	2 cut(s)	61, 260
BsnI	GGCC	3 cut(s)	404, 453, 522
Bsp1286I	GDGCHC	2 cut(s)	106, 416
Bsp143I	GATC	2 cut(s)	114, 223
BspACI	CCGC	2 cut(s)	247, 523
BspANI	GGCC	3 cut(s)	404, 453, 522
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	5 cut(s)	26, 143, 154, 415, 452
BspT107I	GGYRCC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	249, 441
BsrI	ACTGG	5 cut(s)	278, 452, 464, 513, 586
BssECI	CCNNGG	2 cut(s)	37, 148
BssMI	GATC	2 cut(s)	114, 223
Bst2UI	CCWGG	4 cut(s)	38, 150, 189, 418
Bst4CI	ACNGT	3 cut(s)	138, 331, 591
Bst6I	CTCTTC	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	106, 432
BstDEI	CTNAG	3 cut(s)	65, 231, 355
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	117, 226
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	2 cut(s)	114, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	4 cut(s)	38, 150, 189, 418
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	36, 148, 187, 416
BstSFI	CTRYAG	2 cut(s)	31, 286
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	232
BstXI	CCANNNNNNTGG	2 cut(s)	44, 195
BsuRI	GGCC	3 cut(s)	404, 453, 522
BtsI	GCAGTG	2 cut(s)	69, 165
BtsIMutI	CAGTG	6 cut(s)	69, 143, 165, 285, 327, 520
Cac8I	GCNNGC	2 cut(s)	106, 432
Cfr13I	GGNCC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	65, 231, 355
DpnI	GATC	2 cut(s)	116, 225
DpnII	GATC	2 cut(s)	114, 223
DraIII	CACNNNGTG	1 cut(s)	191
EaeI	YGGCCR	2 cut(s)	402, 520
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoRII	CCWGG	4 cut(s)	36, 148, 187, 416
EcoT38I	GRGCYC	1 cut(s)	416
FaiI	YATR	6 cut(s)	21, 45, 161, 320, 577, 579
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FaqI	GGGAC	2 cut(s)	61, 260
Fnu4HI	GCNGC	2 cut(s)	60, 523
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	60, 523
GluI	GCNGC	2 cut(s)	60, 523
GsaI	CCCAGC	2 cut(s)	214, 270
GsuI	CTGGAG	2 cut(s)	400, 405
HaeIII	GGCC	3 cut(s)	404, 453, 522
HinfI	GANTC	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	114, 573
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	3 cut(s)	138, 331, 591
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	74, 303, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	3 cut(s)	65, 231, 355
HpySE526I	ACGT	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	114, 223
LmnI	GCTCC	3 cut(s)	101, 158, 419
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	290
MabI	ACCWGGT	1 cut(s)	187
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	163, 364, 505
MalI	GATC	2 cut(s)	116, 225
MboI	GATC	2 cut(s)	114, 223
MboII	GAAGA	2 cut(s)	232, 321
MhlI	GDGCHC	2 cut(s)	106, 416
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	2 cut(s)	469, 556
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	9 cut(s)	38, 155, 216, 254, 305, 308, 488, 503, 561
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	404
MspR9I	CCNGG	4 cut(s)	38, 150, 189, 418
MvaI	CCWGG	4 cut(s)	38, 150, 189, 418
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	114, 223
NlaIV	GGNNCC	5 cut(s)	26, 143, 154, 415, 452
NmuCI	GTSAC	3 cut(s)	163, 364, 505
OliI	CACNNNNGTG	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	61, 524
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	371
Psp6I	CCWGG	4 cut(s)	36, 148, 187, 416
PspFI	CCCAGC	2 cut(s)	210, 266
PspGI	CCWGG	4 cut(s)	36, 148, 187, 416
PspN4I	GGNNCC	5 cut(s)	26, 143, 154, 415, 452
PspPI	GGNCC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	139
SatI	GCNGC	2 cut(s)	60, 523
Sau3AI	GATC	2 cut(s)	114, 223
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	4 cut(s)	38, 150, 189, 418
SduI	GDGCHC	2 cut(s)	106, 416
SetI	ASST	9 cut(s)	30, 64, 98, 122, 193, 268, 326, 375, 480
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	290
SfcI	CTRYAG	2 cut(s)	31, 286
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	469, 556
SsiI	CCGC	2 cut(s)	247, 523
StyD4I	CCNGG	4 cut(s)	36, 148, 187, 416
TaaI	ACNGT	3 cut(s)	138, 331, 591
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	469, 556
TauI	GCSGC	1 cut(s)	525
TscAI	CASTG	6 cut(s)	76, 143, 172, 285, 334, 520
TseFI	GTSAC	3 cut(s)	163, 364, 505
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	3 cut(s)	163, 364, 505
TspRI	CASTG	6 cut(s)	76, 143, 172, 285, 334, 520
Van91I	CCANNNNNTGG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	192, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.