pycom17g05670

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014778
Physical Location & Seq
Reverse (-)
4022514 .. 4024130
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1617 bp
ATGGAGCATGTGTGCAAGCACTGCAAAAAGAGCTTCTTGAGCGGCAGAGTTTTGGGAGGTCACATGAGGTGCCATGGAGCAAAGAAATCGGCTAAAACTGAGAAAAATATCGAAATGTGCAGAGCATATTCTGAGGTTGAAGACGATGATCACGCTGGTTATGGATTACGAGTGAACCCGAAAAAGTCCTGGAAATTTTCAGGGCACTCGAAGTTCGAAGCTTCTGCCGGGGAAGAAAAAGAGATCGTCTGCAGGTGCAGGGTTTGTGGCAAAGGGTTTGATTCGATGAGAGCGATGTTCGGGCACATGAGGCATCACTCAGGGAGGGAGAGGAAGGAGACGCAGTCCTGCGAAGTTTGTGGTAAAGGGTTCAAAACGTTGAGAGCTTTAGCTACTCATAGCAGATGCCACTCGAAAAGTATTAGGGGAACTGATGGATTGGAGACTGTTTCTTCAAGCAAGAAGCTTTCTGTGGATTGCTGTCAGTACAGCAGTGAGACAATGGGGCTGATTCGGAGGAAAAGATCGAAAAGATTGAGGTACAAGATTACTAATTCAAGTTGTTCTTTTTCTAGTTTCAGTGTTAATGAATCTAAGTATGTCGCTGAATTTGGGGAAGAAGTAGTAGAGGGGGCAATTTGTTTGATGATCATATCTGGTTGTGGAAGCAATTGGGGTCGAATTAGTTCGGTTACTGAGTCTTCGGATAATAATTCCTTGTCTTTAGAGGTTCAATCACCAGGCTTAAAGAATTGGATCATGGGAAATAAGGGTGGTGTATCTGTTTGTGATGATACTGTGAAATTGGTTGATTGCATTTCTGATTGTAAGAATGTCTCTGTTGAGAAGAAAGTATTTGAATTTAGCGAAAATAATTCTGGGTTTGCGAATGATGAGGAAAAGAATGTCGAAATGGAAGGTAGGTTCTTCAGGGGTGTAGGATATAAGAGGCCGAGACTGGATGAGGAATCTGTATTTGGGTTGTGTGATACTGAAATGGAAATGAACGTGGATATTATCGAGGAAGTAGAATCGGATGTAGCTGCATTCAGATCAATGAAGTCAGGTTTGAATAAACCCAAGTTATATGCTACTGAATCTGAAGTCTTTGCTGATTCCCAGAAGAAAAGAGAGCACAAGTGCAGGCTTTGCAACAAGGTTTTCGGCACGTATCAGGCACTTGGAGGCCACCAAAGAATTCACAAATCAACCAACACCACTTCTGTGGTAAATATTGAGGATTATGAAGATGGAATTCCGACTAACAAGTTTTCGAAGATGGGGTACAGTTGCAAGCTTGCCAAGACTGAATGCAGTGATAGTTCAGCAGCAGAAGAGGAGATGGAAAGAGTTATTGAGAATAAGGGTCACAAGTGCTCCATCTGCTTGAAGGTGTTTGCAACAGGCCAAGCTTTGGGTGGCCACAAGAGAGTTCATTTCGGCAAAGACCACGAGACAGGTGCAGAAGAGTCCAGAGTGCTGAAGCAGCAGATTTCCAACATCTGCGATGCATTTGATCTTAGCCGTCCAATCGAAAATGGTCATGTTGATTTTAAGTCCTGGTGGCCTGTAAATGAACATAAGCAGGAGCTGTTGATGGATCTGATGCCCAACTGA

Protein Analysis

539

Amino Acids

60.28

Weight (kDa)

8.17

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 379 - 403 3.9e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 457 - 479 4.6e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47240
malus_domestica MD00G1156100.v1.1 MD09G1062700.v1.1
prunus_persica Prupe.3G257500_v2.0.a1
pyrus_communis pycom111g05300 pycom111g05310 pycom17g05670
rosa_chinensis RchiOBHm_Chr2g0166281
rosa_laevigata RLG00000021603
rosa_multiflora Rmu_sc0024214.1_g000001
rosa_roxburghii Rroxscaffold_2G00085020
rosa_rugosa Rorug02G0521800
rosa_samantha Rh2AG587900 Rh2BG599900 Rh2CG570800 Rh2DG610100
rosa_wichuraiana Rw2G049000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 1414
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 377
AclWI GGATC 2 cut(s) 764, 1608
AcoI YGGCCR 1 cut(s) 1420
AcsI RAATTY 5 cut(s) 194, 608, 860, 1197, 1254
AcuI CTGAAG 3 cut(s) 913, 1122, 1502
AfaI GTAC 3 cut(s) 488, 542, 1286
AfiI CCNNNNNNNGG 1 cut(s) 1414
AgsI TTSAA 8 cut(s) 140, 373, 456, 558, 734, 860, 1072, 1390
AjnI CCWGG 3 cut(s) 188, 739, 1559
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AleI CACNNNNGTG 1 cut(s) 1223
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 9 cut(s) 33, 221, 386, 392, 466, 1043, 1297, 1412, 1591
AluI AGCT 9 cut(s) 33, 221, 386, 392, 466, 1043, 1297, 1412, 1591
Alw21I GWGCWC 2 cut(s) 1137, 1379
Alw26I GTCTC 6 cut(s) 332, 437, 491, 841, 949, 1448
AlwI GGATC 2 cut(s) 764, 1608
AlwNI CAGNNNCTG 1 cut(s) 1591
AoxI GGCC 5 cut(s) 950, 1186, 1405, 1420, 1565
ApeKI GCWGC 3 cut(s) 1043, 1328, 1486
ApoI RAATTY 5 cut(s) 194, 608, 860, 1197, 1254
Asp700I GAANNNNTTC 1 cut(s) 685
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 729
AsuII TTCGAA 2 cut(s) 216, 1274
BaeGI GKGCMC 2 cut(s) 207, 306
BalI TGGCCA 1 cut(s) 1422
BanI GGYRCC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 1268, 1300
BauI CACGAG 1 cut(s) 1451
BbsI GAAGAC 2 cut(s) 147, 693
Bbv12I GWGCWC 2 cut(s) 1137, 1379
BbvI GCAGC 3 cut(s) 1030, 1340, 1498
BccI CCATC 6 cut(s) 428, 1244, 1273, 1336, 1388, 1591
BceAI ACGGC 1 cut(s) 1509
BcgI CGANNNNNNTGC 6 cut(s) 69, 103, 206, 240, 1442, 1476
BciT130I CCWGG 3 cut(s) 190, 741, 1561
BclI TGATCA 2 cut(s) 148, 648
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 6 cut(s) 332, 437, 491, 841, 949, 1448
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 4 cut(s) 43, 1044, 1329, 1487
BlsI GCNGC 4 cut(s) 44, 1045, 1330, 1488
Bme1390I CCNGG 4 cut(s) 190, 229, 741, 1561
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 4 cut(s) 190, 229, 741, 1561
BmsI GCATC 4 cut(s) 322, 395, 1498, 1596
BpiI GAAGAC 2 cut(s) 147, 693
Bpu14I TTCGAA 2 cut(s) 216, 1274
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 1170
BsaJI CCNNGG 2 cut(s) 73, 228
BsaXI ACNNNNNCTCC 5 cut(s) 26, 329, 359, 1361, 1391
Bsc4I CCNNNNNNNGG 1 cut(s) 1414
Bse1I ACTGG 1 cut(s) 963
BseBI CCWGG 3 cut(s) 190, 741, 1561
BseDI CCNNGG 2 cut(s) 73, 228
BseGI GGATG 2 cut(s) 967, 1042
BseLI CCNNNNNNNGG 1 cut(s) 1414
BseMII CTCAG 4 cut(s) 90, 123, 333, 687
BseNI ACTGG 1 cut(s) 963
BseRI GAGGAG 1 cut(s) 1352
BseSI GKGCMC 2 cut(s) 207, 306
BseXI GCAGC 3 cut(s) 1030, 1340, 1498
BsgI GTGCAG 4 cut(s) 139, 277, 1162, 1482
BshFI GGCC 5 cut(s) 952, 1188, 1407, 1422, 1567
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 1137, 1379
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 1414
BsmAI GTCTC 6 cut(s) 332, 437, 491, 841, 949, 1448
BsmBI CGTCTC 1 cut(s) 332
BsmI GAATGC 2 cut(s) 1046, 1316
BsnI GGCC 5 cut(s) 952, 1188, 1407, 1422, 1567
Bsp119I TTCGAA 2 cut(s) 216, 1274
Bsp1286I GDGCHC 4 cut(s) 207, 306, 1137, 1379
Bsp143I GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 1 cut(s) 42
BspANI GGCC 5 cut(s) 952, 1188, 1407, 1422, 1567
BspCNI CTCAG 4 cut(s) 91, 124, 332, 688
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 764, 1608
BspT104I TTCGAA 2 cut(s) 216, 1274
BspT107I GGYRCC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 963
BssECI CCNNGG 2 cut(s) 73, 228
BssMI GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
BssSI CACGAG 1 cut(s) 1451
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 1451
Bst2UI CCWGG 3 cut(s) 190, 741, 1561
Bst4CI ACNGT 3 cut(s) 448, 799, 1289
Bst6I CTCTTC 2 cut(s) 1329, 1461
BstAPI GCANNNNNTGC 2 cut(s) 21, 1149
BstBAI YACGTR 1 cut(s) 1170
BstBI TTCGAA 2 cut(s) 216, 1274
BstC8I GCNNGC 4 cut(s) 17, 1145, 1295, 1299
BstDEI CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1520
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 967, 1042
BstKTI GATC 8 cut(s) 151, 246, 527, 651, 759, 1055, 1519, 1603
BstMAI GTCTC 6 cut(s) 332, 437, 491, 841, 949, 1448
BstMBI GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
BstMWI GCNNNNNNNGC 7 cut(s) 21, 30, 39, 310, 1149, 1383, 1486
BstNI CCWGG 3 cut(s) 190, 741, 1561
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 4 cut(s) 188, 227, 739, 1559
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 2 cut(s) 207, 306
BstV1I GCAGC 3 cut(s) 1030, 1340, 1498
BstV2I GAAGAC 2 cut(s) 147, 693
BstX2I RGATCY 1 cut(s) 1600
BstXI CCANNNNNNTGG 1 cut(s) 1225
BstYI RGATCY 1 cut(s) 1600
BsuRI GGCC 5 cut(s) 952, 1188, 1407, 1422, 1567
BtgI CCRYGG 1 cut(s) 73
BtgZI GCGATG 2 cut(s) 308, 1521
BtsCI GGATG 2 cut(s) 967, 1042
BtsI GCAGTG 3 cut(s) 19, 499, 1321
BtsIMutI CAGTG 4 cut(s) 19, 499, 586, 1321
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 4 cut(s) 17, 1145, 1295, 1299
CaiI CAGNNNCTG 1 cut(s) 1591
CseI GACGC 1 cut(s) 349
Csp6I GTAC 3 cut(s) 487, 541, 1285
CviAII CATG 6 cut(s) 8, 64, 74, 307, 760, 1544
CviQI GTAC 3 cut(s) 487, 541, 1285
DdeI CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1520
DpnI GATC 8 cut(s) 150, 245, 526, 650, 758, 1054, 1518, 1602
DpnII GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
EaeI YGGCCR 1 cut(s) 1420
Eam1104I CTCTTC 2 cut(s) 1329, 1461
EarI CTCTTC 2 cut(s) 1329, 1461
Eco130I CCWWGG 1 cut(s) 73
Eco57I CTGAAG 3 cut(s) 913, 1122, 1502
EcoRI GAATTC 2 cut(s) 1197, 1254
EcoRII CCWGG 3 cut(s) 188, 739, 1559
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 1513
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 6 cut(s) 11, 67, 77, 310, 763, 1547
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 550, 582
FatI CATG 6 cut(s) 7, 63, 73, 306, 759, 1543
FbaI TGATCA 2 cut(s) 148, 648
Fnu4HI GCNGC 4 cut(s) 43, 1044, 1329, 1487
FokI GGATG 2 cut(s) 974, 1049
Fsp4HI GCNGC 4 cut(s) 43, 1044, 1329, 1487
FspBI CTAG 1 cut(s) 573
GluI GCNGC 4 cut(s) 43, 1044, 1329, 1487
HaeIII GGCC 5 cut(s) 952, 1188, 1407, 1422, 1567
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 349
Hin1II CATG 6 cut(s) 11, 67, 77, 310, 763, 1547
HindIII AAGCTT 4 cut(s) 219, 464, 1295, 1410
HinfI GANTC 9 cut(s) 281, 511, 590, 698, 968, 1031, 1097, 1115, 1469
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 729
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 9 cut(s) 133, 516, 706, 823, 1036, 1052, 1102, 1260, 1605
Hpy188III TCNNGA 2 cut(s) 37, 1473
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 328, 911, 1384
HpyCH4III ACNGT 3 cut(s) 448, 799, 1289
HpyCH4IV ACGT 3 cut(s) 377, 1008, 1169
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 30, 39, 310, 1149, 1383, 1486
HpyF3I CTNAG 6 cut(s) 99, 132, 319, 594, 696, 1520
HpySE526I ACGT 3 cut(s) 377, 1008, 1169
Hsp92II CATG 6 cut(s) 11, 67, 77, 310, 763, 1547
Ksp22I TGATCA 2 cut(s) 148, 648
Kzo9I GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
LmnI GCTCC 4 cut(s) 4, 77, 1382, 1588
Lsp1109I GCAGC 3 cut(s) 1030, 1340, 1498
LweI GCATC 4 cut(s) 322, 395, 1498, 1596
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 377, 1008, 1169
MaeIII GTNAC 3 cut(s) 59, 691, 1367
MalI GATC 8 cut(s) 150, 245, 526, 650, 758, 1054, 1518, 1602
MbiI CCGCTC 1 cut(s) 42
MboI GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 1 cut(s) 1600
MhlI GDGCHC 4 cut(s) 207, 306, 1137, 1379
MlsI TGGCCA 1 cut(s) 1422
MluNI TGGCCA 1 cut(s) 1422
MlyI GAGTC 2 cut(s) 707, 1478
MmeI TCCRAC 2 cut(s) 1283, 1521
Mox20I TGGCCA 1 cut(s) 1422
Mph1103I ATGCAT 1 cut(s) 1513
MroXI GAANNNNTTC 1 cut(s) 685
MscI TGGCCA 1 cut(s) 1422
MseI TTAA 3 cut(s) 585, 746, 1554
MslI CAYNNNNRTG 1 cut(s) 1223
Msp20I TGGCCA 1 cut(s) 1422
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 4 cut(s) 190, 229, 741, 1561
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 2 cut(s) 1046, 1316
MvaI CCWGG 3 cut(s) 190, 741, 1561
MwoI GCNNNNNNNGC 7 cut(s) 21, 30, 39, 310, 1149, 1383, 1486
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 73
NdeII GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
NlaIII CATG 6 cut(s) 11, 67, 77, 310, 763, 1547
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 2 cut(s) 59, 1367
NsiI ATGCAT 1 cut(s) 1513
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 2 cut(s) 216, 1274
OliI CACNNNNGTG 1 cut(s) 1223
PaqCI CACCTGC 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PctI GAATGC 2 cut(s) 1046, 1316
PdmI GAANNNNTTC 1 cut(s) 685
PfeI GAWTC 7 cut(s) 281, 511, 590, 968, 1031, 1097, 1115
PflFI GACNNNGTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 1414
PfoI TCCNGGA 1 cut(s) 188
PkrI GCNGC 4 cut(s) 44, 1045, 1330, 1488
PleI GAGTC 2 cut(s) 706, 1477
PpsI GAGTC 2 cut(s) 706, 1477
Ppu21I YACGTR 1 cut(s) 1170
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 3 cut(s) 188, 739, 1559
PspGI CCWGG 3 cut(s) 188, 739, 1559
PspN4I GGNNCC 1 cut(s) 71
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 1591
PsuI RGATCY 1 cut(s) 1600
PsyI GACNNNGTC 1 cut(s) 343
RsaI GTAC 3 cut(s) 488, 542, 1286
RsaNI GTAC 3 cut(s) 487, 541, 1285
RseI CAYNNNNRTG 1 cut(s) 1223
SaqAI TTAA 3 cut(s) 585, 746, 1554
SatI GCNGC 4 cut(s) 43, 1044, 1329, 1487
Sau3AI GATC 8 cut(s) 148, 243, 524, 648, 756, 1052, 1516, 1600
SchI GAGTC 2 cut(s) 707, 1478
ScrFI CCNGG 4 cut(s) 190, 229, 741, 1561
SduI GDGCHC 4 cut(s) 207, 306, 1137, 1379
SfaNI GCATC 4 cut(s) 322, 395, 1498, 1596
SfcI CTRYAG 1 cut(s) 250
SfuI TTCGAA 2 cut(s) 216, 1274
SmiMI CAYNNNNRTG 1 cut(s) 1223
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SsiI CCGC 1 cut(s) 42
SspI AATATT 1 cut(s) 1234
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 188, 227, 739, 1559
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 448, 799, 1289
TaiI ACGT 3 cut(s) 380, 1011, 1172
TatI WGTACW 1 cut(s) 486
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 7 cut(s) 281, 511, 590, 968, 1031, 1097, 1115
Tru1I TTAA 3 cut(s) 585, 746, 1554
Tru9I TTAA 3 cut(s) 585, 746, 1554
TscAI CASTG 4 cut(s) 26, 499, 586, 1321
TseFI GTSAC 2 cut(s) 59, 1367
TseI GCWGC 3 cut(s) 1043, 1328, 1486
Tsp45I GTSAC 2 cut(s) 59, 1367
TspDTI ATGAA 6 cut(s) 603, 1019, 1073, 1260, 1424, 1590
TspRI CASTG 4 cut(s) 26, 499, 586, 1321
Tth111I GACNNNGTC 1 cut(s) 343
Van91I CCANNNNNTGG 1 cut(s) 1414
XapI RAATTY 5 cut(s) 194, 608, 860, 1197, 1254
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 1415
XmnI GAANNNNTTC 1 cut(s) 685
XspI CTAG 1 cut(s) 573
Zsp2I ATGCAT 1 cut(s) 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.