Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012671

Physical Location & Seq

Genomic Coordinates Reverse (-)

5890842 .. 5891694

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAATACTTGGAAGCTTTGCCTGAATCATATGATATTAACCTCAATGAGACTCTACTATTATGCCAAGGTGAGGAAGATGGGCTGTTAATCCAATCCCCATCAGCTATTGCATATGCTTTTATGAGGACAGGACGCAAGGAGTTTTTGTCCAAATTGAATTCTATTGTCCAAAAATGCGGGTTCTCGGTCTGCCGTCACCTGTACAAATTTCATAAGACTTTAAGACCTGGTTTGACCTGGTTTGGTACTGAGGTGATTCTGAAAAAAGCTGCTATCAAAAAAAGCTGGGAGCTGTTTTTGTGTTTGGTAAACACTCAGCTTCAGCTTTTTTTCACAGTTTTGGATGAAAAAAAAGCCAAAAACAATAAGCTGCAAAACCCAGCTTTGAAAAACCGGCTTTTTTTCACATCTGTTTTACATAAAAGTTTACCAAACACTCTAATACTGTTTTTTTTTTCAAAAGCACTTTTACAAAAAAGTTTACCAAACATTTTGCTGCTTTATTTCACAGCTGCTTATTCTCACAGCACAGCAGAAGCAGTTTTTTTTCAAAGCAGAGCAATACTAAACCAGCCCTTAACTATATATACACACACACGAGATATGTCTGAGTATACTATATTATTCTTTCAACTGTTAAACTGTTACGGAAAATATAAAAATAAAGATCTAACATTTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001101 GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031667 GO:0042221 GO:0042493 GO:0043207 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080013 GO:0080027 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

230

Amino Acids

26.55

Weight (kDa)

9.48

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012671)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g11840 pycom02g19230 pycom03g18770 pycom04g15630 pycom04g19590 pycom06g01140 pycom07g19170 pycom1146g00020 pycom12g13500 pycom12g15480 pycom12g15620 pycom13g24290 pycom14g04610 pycom16g10630 pycom17g07900 pycom17g17160
rosa_samantha	Rh7AG153500 Rh7BG154700 Rh7CG158800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	617
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	160, 209
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	206, 250
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	5 cut(s)	160, 391, 462, 554, 635
AjnI	CCWGG	2 cut(s)	229, 239
Alw26I	GTCTC	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	272, 373, 499, 515
ApoI	RAATTY	2 cut(s)	160, 209
AsuHPI	GGTGA	3 cut(s)	83, 191, 268
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BauI	CACGAG	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	259, 360, 486, 502
BccI	CCATC	2 cut(s)	74, 109
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	2 cut(s)	231, 241
BcoDI	GTCTC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	4 cut(s)	273, 374, 500, 516
BlsI	GCNGC	4 cut(s)	274, 375, 501, 517
Bme1390I	CCNGG	2 cut(s)	231, 241
BmrFI	CCNGG	2 cut(s)	231, 241
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	231, 241
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	243, 332, 603
BseXI	GCAGC	4 cut(s)	259, 360, 486, 502
BseYI	CCCAGC	2 cut(s)	288, 382
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	670
BspACI	CCGC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	244, 331, 604
BsrFI	RCCGGY	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	670
BssNAI	GTATAC	1 cut(s)	618
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	67
Bst1107I	GTATAC	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	2 cut(s)	231, 241
Bst4CI	ACNGT	4 cut(s)	340, 450, 639, 647
BstAUI	TGTACA	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	252, 318, 612
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	670
BstNI	CCWGG	2 cut(s)	231, 241
BstSCI	CCNGG	2 cut(s)	229, 239
BstV1I	GCAGC	4 cut(s)	259, 360, 486, 502
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BstZ17I	GTATAC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	396
CseI	GACGC	1 cut(s)	144
CsiI	ACCWGGT	2 cut(s)	229, 239
Csp6I	GTAC	2 cut(s)	205, 249
CviQI	GTAC	2 cut(s)	205, 249
DdeI	CTNAG	3 cut(s)	252, 318, 612
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraI	TTTAAA	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	229, 239
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	173
FauNDI	CATATG	2 cut(s)	31, 115
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	273, 374, 500, 516
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	273, 374, 500, 516
GluI	GCNGC	4 cut(s)	273, 374, 500, 516
GsaI	CCCAGC	2 cut(s)	292, 386
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	3 cut(s)	26, 52, 259
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	3 cut(s)	83, 191, 268
Hpy166II	GTNNAC	4 cut(s)	313, 431, 485, 618
Hpy188I	TCNGA	2 cut(s)	264, 613
Hpy8I	GTNNAC	4 cut(s)	313, 431, 485, 618
HpyCH4III	ACNGT	4 cut(s)	340, 450, 639, 647
HpyCH4V	TGCA	3 cut(s)	4, 113, 376
HpyF3I	CTNAG	3 cut(s)	252, 318, 612
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	4 cut(s)	259, 360, 486, 502
MabI	ACCWGGT	2 cut(s)	229, 239
MaeIII	GTNAC	2 cut(s)	197, 647
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	670
MluCI	AATT	4 cut(s)	155, 160, 209, 685
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	53, 67, 120, 247
MseI	TTAA	7 cut(s)	39, 89, 224, 581, 641, 681, 688
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	231, 241
MvaI	CCWGG	2 cut(s)	231, 241
NdeI	CATATG	2 cut(s)	31, 115
NdeII	GATC	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	26, 259
PkrI	GCNGC	4 cut(s)	274, 375, 501, 517
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	229, 239
PspFI	CCCAGC	2 cut(s)	288, 382
PspGI	CCWGG	2 cut(s)	229, 239
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	206, 250
RsaNI	GTAC	2 cut(s)	205, 249
SaqAI	TTAA	7 cut(s)	39, 89, 224, 581, 641, 681, 688
SatI	GCNGC	4 cut(s)	273, 374, 500, 516
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	231, 241
SexAI	ACCWGGT	2 cut(s)	229, 239
Sse9I	AATT	4 cut(s)	155, 160, 209, 685
SsiI	CCGC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	229, 239
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	4 cut(s)	340, 450, 639, 647
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	155, 160, 209, 685
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	26, 259
Tru1I	TTAA	7 cut(s)	39, 89, 224, 581, 641, 681, 688
Tru9I	TTAA	7 cut(s)	39, 89, 224, 581, 641, 681, 688
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	4 cut(s)	272, 373, 499, 515
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	203, 363
TspGWI	ACGGA	1 cut(s)	666
XapI	RAATTY	2 cut(s)	160, 209
XmiI	GTMKAC	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.