Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

6738791 .. 6742003

Gene Structure 3213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCATCATCATCAGGCCAACGAGACTGTGTGGCTTTTCGATCCTCTTGTGGATCAGATACTGTGATGCCAGGCATGAATGGTAGTGCAAACTGCTTACTAATGAATCCTACTTGTAGCAGAAGCATCAACCTTGGATTTCCTACCACGCAACAAGTTCATCCGAGCATGTCACTTTCACTGTCCAGCATCAGCAGGGAAAGCAATCCTGATTACCAAGATCGTGGATTGTCACCAGTCTTTCTGGCCGGAGAGCCTTGGGAGTCAACTTTGGAGGCTAGCAGTCCACAAGCAAGGGACAAAGCAAAGATGAGATACAAGGAGAAAAAGAAAACTCGCACGTACATGTTTGGTAAACAAATAAGATATGCCTCTAGGAAGGCCAGAGCTGATACTAGAAAACGCGTCAAAGGAAGATTTATTAAGGCTGGCGAAGAATATGATTACGATCCACTTGTGACAAGAATAGTTGCACCCTCCCTAATCCTCTGCACATGGTACACTGCATTGCCTGCCAACCATTGCAAGTTCCACAATTCCTACACTTCAAGACTGCAACTAAGAAATCATCCAACCTCAATACACTATGAACCTAGTAATGTCATCAAGTTCACCAAGAAAAAAAATTCACAGCTAAGATTTTCTTACACCAAATTTCGCAGCTCACAGAGCAACCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

228

Amino Acids

25.78

Weight (kDa)

9.99

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	99 - 143	1.7e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	405
AclWI	GGATC	3 cut(s)	36, 61, 443
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	625, 653
AfaI	GTAC	2 cut(s)	344, 500
AflIII	ACRYGT	2 cut(s)	345, 403
AgsI	TTSAA	1 cut(s)	549
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	389, 634, 663
AluI	AGCT	3 cut(s)	389, 634, 663
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	36, 61, 443
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	16, 246, 381
ApeKI	GCWGC	1 cut(s)	660
ApoI	RAATTY	2 cut(s)	625, 653
AsuHPI	GGTGA	2 cut(s)	225, 604
AsuNHI	GCTAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	672
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	4 cut(s)	279, 375, 396, 594
BisI	GCNGC	1 cut(s)	661
BlsI	GCNGC	1 cut(s)	662
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	4 cut(s)	14, 57, 135, 198
BmtI	GCTAGC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	133, 257
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	506, 520
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	133, 257
BseGI	GGATG	2 cut(s)	160, 568
BseJI	GATNNNNATC	1 cut(s)	447
BseMI	GCAATG	2 cut(s)	506, 520
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	672
BsgI	GTGCAG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	18, 248, 383
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	18, 248, 383
Bsp143I	GATC	4 cut(s)	41, 53, 220, 448
BspANI	GGCC	3 cut(s)	18, 248, 383
BspFNI	CGCG	1 cut(s)	405
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	36, 61, 443
BsrDI	GCAATG	2 cut(s)	506, 520
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	133, 257
BssMI	GATC	4 cut(s)	41, 53, 220, 448
BssT1I	CCWWGG	2 cut(s)	133, 257
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	29, 64, 183
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	280, 430, 513
BstDEI	CTNAG	2 cut(s)	560, 635
BstF5I	GGATG	2 cut(s)	160, 568
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	4 cut(s)	44, 56, 223, 451
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	4 cut(s)	41, 53, 220, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 512, 669
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	2 cut(s)	172, 349
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	672
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	18, 248, 383
BtsCI	GGATG	2 cut(s)	160, 568
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	179, 501
Cac8I	GCNNGC	3 cut(s)	280, 430, 513
CaiI	CAGNNNCTG	1 cut(s)	62
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	343, 499
CviAII	CATG	4 cut(s)	76, 169, 346, 495
CviQI	GTAC	2 cut(s)	343, 499
DdeI	CTNAG	2 cut(s)	560, 635
DpnI	GATC	4 cut(s)	43, 55, 222, 450
DpnII	GATC	4 cut(s)	41, 53, 220, 448
EaeI	YGGCCR	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	133, 257
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	133, 257
ErhI	CCWWGG	2 cut(s)	133, 257
FaeI	CATG	4 cut(s)	79, 172, 349, 498
FaiI	YATR	7 cut(s)	77, 170, 347, 369, 441, 496, 588
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	4 cut(s)	75, 168, 345, 494
Fnu4HI	GCNGC	1 cut(s)	661
FokI	GGATG	2 cut(s)	147, 555
Fsp4HI	GCNGC	1 cut(s)	661
FspBI	CTAG	4 cut(s)	279, 375, 396, 594
GluI	GCNGC	1 cut(s)	661
HaeIII	GGCC	3 cut(s)	18, 248, 383
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	79, 172, 349, 498
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	106, 263
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	225, 604
Hpy166II	GTNNAC	5 cut(s)	267, 287, 356, 501, 612
Hpy188I	TCNGA	2 cut(s)	58, 165
Hpy188III	TCNNGA	2 cut(s)	209, 549
Hpy8I	GTNNAC	5 cut(s)	267, 287, 356, 501, 612
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	29, 64, 183
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	6 cut(s)	89, 473, 492, 506, 525, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 512, 669
HpyF3I	CTNAG	2 cut(s)	560, 635
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	79, 172, 349, 498
Kzo9I	GATC	4 cut(s)	41, 53, 220, 448
Lsp1109I	GCAGC	1 cut(s)	672
LweI	GCATC	4 cut(s)	14, 57, 135, 198
MaeI	CTAG	4 cut(s)	279, 375, 396, 594
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	171, 231, 457
MalI	GATC	4 cut(s)	43, 55, 222, 450
MboI	GATC	4 cut(s)	41, 53, 220, 448
MboII	GAAGA	2 cut(s)	426, 446
MluCI	AATT	3 cut(s)	535, 625, 653
MluI	ACGCGT	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	6 cut(s)	55, 268, 382, 487, 497, 586
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	201, 512, 669
NdeII	GATC	4 cut(s)	41, 53, 220, 448
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	4 cut(s)	79, 172, 349, 498
NmuCI	GTSAC	3 cut(s)	171, 231, 457
NspI	RCATGY	2 cut(s)	172, 349
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	662
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	342
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	344, 500
RsaNI	GTAC	2 cut(s)	343, 499
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	661
Sau3AI	GATC	4 cut(s)	41, 53, 220, 448
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	7 cut(s)	135, 344, 391, 578, 595, 636, 665
SfaNI	GCATC	4 cut(s)	14, 57, 135, 198
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	535, 625, 653
SspMI	CTAG	4 cut(s)	279, 375, 396, 594
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	133, 257
TaaI	ACNGT	3 cut(s)	29, 64, 183
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	535, 625, 653
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	186, 508
TseFI	GTSAC	3 cut(s)	171, 231, 457
TseI	GCWGC	1 cut(s)	660
Tsp45I	GTSAC	3 cut(s)	171, 231, 457
TspDTI	ATGAA	4 cut(s)	92, 119, 149, 603
TspRI	CASTG	2 cut(s)	186, 508
XapI	RAATTY	2 cut(s)	625, 653
XceI	RCATGY	2 cut(s)	172, 349
XspI	CTAG	4 cut(s)	279, 375, 396, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.