pycom17g09530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006274
Physical Location & Seq
Reverse (-)
7262765 .. 7263775
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGTCCTCCGACTGGTTTCAAGATGATCTCTTGGGCGTTTCCAACTCTGGGTTTTCTGGAGGGCCTGAACGGTTGGAAATCCTTGCTGAGGTGAAGGGTGGAATAGCTGAAAATGTGAATAACTCTTTTCCTGATGGTGTTGATTGGGTTCAAAACAACCAATTGCAGATCCCTAGCAACAAGGATCTTGATAGTAAGACTACTGTGGAGAATGATGATTCGTTTGATGCTTGGAATGATTTCGCAAGATCGAGTAATGCACCAAATCTTGTGGATAGTTCTGTTAAACAAGGTGGTGTGGATTGGGTTCAAGACAACCAATTGCAGACCACTAGCAACAAGGCTCTTGATAATAAGACTGCTGATGAGGATGGTGATTCATTCAATGCTTGGAATGATTTTGCTAGCTCGAAGAATGCATCAAATCTTGCAGATAATTCTGTAAAACGAAGTATTAATCAGACGACATCTGTTGACCACACTTCAGAAATAAATTTGTGCAGCACTAGCAGCTCCGGTGACTTGGATTTTGGTAGCTTTTTGCAACCAGATTTCTCAGCAGGAGCATTGAACAGTTCCAACAGTTCAACTGTCGTGAATAGAGTGCAGCTAGAGCCTTCTGTATTAGACAGGTTGGGTGATGCAAGCATTAACGATGGAAAAAATTCTGAAGATGTGGTGGAGGGCGGAGATGCTTCCAGCGTAAGGGCAGGGTCAAAATCTGACGATGTGGAGAGAATAATGTCACAGATGCATGATCTCTCGTTCATGCTCGAAAGCACTCTTTCAATCCCTCCCAAGCAAGACGGAGTACATCCGCCCTCTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

29.72

Weight (kDa)

4.14

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 687, 818
AclWI GGATC 2 cut(s) 163, 192
AcsI RAATTY 2 cut(s) 493, 664
AcuI CTGAAG 2 cut(s) 468, 690
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 4 cut(s) 12, 48, 88, 705
AgsI TTSAA 7 cut(s) 20, 152, 311, 385, 571, 588, 789
AluBI AGCT 5 cut(s) 107, 408, 513, 537, 610
AluI AGCT 5 cut(s) 107, 408, 513, 537, 610
AlwI GGATC 2 cut(s) 163, 192
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 501, 510, 607
ApoI RAATTY 2 cut(s) 493, 664
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 2 cut(s) 239, 664
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 4 cut(s) 103, 386, 530, 650
AsuNHI GCTAGC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 513, 522, 619
BccI CCATC 3 cut(s) 128, 365, 650
BfaI CTAG 5 cut(s) 174, 333, 405, 507, 611
BisI GCNGC 3 cut(s) 502, 511, 608
BlsI GCNGC 3 cut(s) 503, 512, 609
BmgT120I GGNCC 1 cut(s) 62
BmsI GCATC 5 cut(s) 217, 428, 631, 682, 741
BmtI GCTAGC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 48, 88, 705
Bse1I ACTGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 376, 814
BseLI CCNNNNNNNGG 4 cut(s) 12, 48, 88, 705
BseMII CTCAG 2 cut(s) 78, 570
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 3 cut(s) 513, 522, 619
BsgI GTGCAG 2 cut(s) 520, 626
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 4 cut(s) 12, 48, 88, 705
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 5 cut(s) 25, 168, 184, 248, 757
BspACI CCGC 2 cut(s) 687, 818
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 79, 569
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 2 cut(s) 163, 192
BsrI ACTGG 1 cut(s) 17
BssMI GATC 5 cut(s) 25, 168, 184, 248, 757
Bst4CI ACNGT 5 cut(s) 72, 205, 575, 584, 592
BstC8I GCNNGC 2 cut(s) 406, 646
BstDEI CTNAG 2 cut(s) 87, 556
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 376, 814
BstKTI GATC 5 cut(s) 28, 171, 187, 251, 760
BstMBI GATC 5 cut(s) 25, 168, 184, 248, 757
BstMWI GCNNNNNNNGC 3 cut(s) 507, 510, 613
BstV1I GCAGC 3 cut(s) 513, 522, 619
BstX2I RGATCY 2 cut(s) 168, 184
BstYI RGATCY 2 cut(s) 168, 184
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 376, 814
Cac8I GCNNGC 2 cut(s) 406, 646
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 812
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 2 cut(s) 755, 769
CviJI RGCY 8 cut(s) 64, 107, 344, 408, 513, 537, 610, 616
CviKI_1 RGCY 8 cut(s) 64, 107, 344, 408, 513, 537, 610, 616
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 2 cut(s) 87, 556
DpnI GATC 5 cut(s) 27, 170, 186, 250, 759
DpnII GATC 5 cut(s) 25, 168, 184, 248, 757
EciI GGCGGA 2 cut(s) 702, 807
Eco57I CTGAAG 2 cut(s) 468, 690
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 62
EcoT22I ATGCAT 2 cut(s) 421, 756
FaeI CATG 2 cut(s) 758, 772
FaiI YATR 2 cut(s) 756, 770
FatI CATG 2 cut(s) 754, 768
Fnu4HI GCNGC 3 cut(s) 502, 511, 608
FokI GGATG 2 cut(s) 383, 801
Fsp4HI GCNGC 3 cut(s) 502, 511, 608
FspBI CTAG 5 cut(s) 174, 333, 405, 507, 611
GluI GCNGC 3 cut(s) 502, 511, 608
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 516
Hin1II CATG 2 cut(s) 758, 772
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 2 cut(s) 218, 377
HpaII CCGG 1 cut(s) 516
HphI GGTGA 4 cut(s) 103, 386, 530, 650
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 5 cut(s) 10, 462, 487, 670, 724
Hpy188III TCNNGA 7 cut(s) 20, 57, 131, 188, 311, 347, 595
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 88, 627
HpyCH4III ACNGT 5 cut(s) 72, 205, 575, 584, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 507, 510, 613
HpyF3I CTNAG 2 cut(s) 87, 556
Hsp92II CATG 2 cut(s) 758, 772
Kzo9I GATC 5 cut(s) 25, 168, 184, 248, 757
LmnI GCTCC 2 cut(s) 518, 563
Lsp1109I GCAGC 3 cut(s) 513, 522, 619
LweI GCATC 5 cut(s) 217, 428, 631, 682, 741
MaeI CTAG 5 cut(s) 174, 333, 405, 507, 611
MaeIII GTNAC 2 cut(s) 518, 744
MalI GATC 5 cut(s) 27, 170, 186, 250, 759
MboI GATC 5 cut(s) 25, 168, 184, 248, 757
MboII GAAGA 2 cut(s) 424, 683
MfeI CAATTG 2 cut(s) 161, 320
MflI RGATCY 2 cut(s) 168, 184
MluCI AATT 5 cut(s) 161, 320, 436, 493, 664
MmeI TCCRAC 4 cut(s) 33, 54, 66, 603
MnlI CCTC 7 cut(s) 16, 53, 82, 361, 676, 804, 832
Mph1103I ATGCAT 2 cut(s) 421, 756
MroXI GAANNNNTTC 2 cut(s) 239, 664
MseI TTAA 3 cut(s) 285, 456, 651
MspI CCGG 1 cut(s) 516
MunI CAATTG 2 cut(s) 161, 320
Mva1269I GAATGC 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 507, 510, 613
NdeII GATC 5 cut(s) 25, 168, 184, 248, 757
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 2 cut(s) 758, 772
NmuCI GTSAC 2 cut(s) 518, 744
NsiI ATGCAT 2 cut(s) 421, 756
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 239, 664
PfeI GAWTC 2 cut(s) 218, 377
PkrI GCNGC 3 cut(s) 503, 512, 609
PshBI ATTAAT 1 cut(s) 456
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 2 cut(s) 168, 184
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
SaqAI TTAA 3 cut(s) 285, 456, 651
SatI GCNGC 3 cut(s) 502, 511, 608
Sau3AI GATC 5 cut(s) 25, 168, 184, 248, 757
Sau96I GGNCC 1 cut(s) 62
SetI ASST 8 cut(s) 93, 109, 295, 410, 515, 539, 612, 635
SfaNI GCATC 5 cut(s) 217, 428, 631, 682, 741
Sse9I AATT 5 cut(s) 161, 320, 436, 493, 664
SsiI CCGC 2 cut(s) 687, 818
SspMI CTAG 5 cut(s) 174, 333, 405, 507, 611
TaaI ACNGT 5 cut(s) 72, 205, 575, 584, 592
TaqI TCGA 3 cut(s) 251, 410, 774
TasI AATT 5 cut(s) 161, 320, 436, 493, 664
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 2 cut(s) 218, 377
Tru1I TTAA 3 cut(s) 285, 456, 651
Tru9I TTAA 3 cut(s) 285, 456, 651
TseFI GTSAC 2 cut(s) 518, 744
TseI GCWGC 3 cut(s) 501, 510, 607
Tsp45I GTSAC 2 cut(s) 518, 744
TspDTI ATGAA 2 cut(s) 369, 757
TspGWI ACGGA 1 cut(s) 822
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 2 cut(s) 493, 664
XmnI GAANNNNTTC 2 cut(s) 239, 664
XspI CTAG 5 cut(s) 174, 333, 405, 507, 611
Zsp2I ATGCAT 2 cut(s) 421, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.