pycom17g11120

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012729
Physical Location & Seq
Reverse (-)
8669368 .. 8670926
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGAAGGCATTGCCTGATCTTGAAAGGGGATACATTGGCGATTCTGTTCTGCAAAGGGATTGGCAGAAGGGAGATGAAAACCTGAAGAAACTTGAAGCTGGTCTTGCTGCTGCTAGAGCATTGATTGGGGAAGCAATAAAAAATCCTAACCATACAACACCTCTTAAAGATGCAGATTATATACCAAAAGGCGATATTTACAGGAATGCGTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAAAATGTTTAAAATATATGTCTACGAAGAGGGAGAGCTGCCTATATTTCATAACGGTCCTTGCAAGAACATTTACTCTACGGAGGGACTCTTCCTTAGCTTCATAGAAACTGATACCAAGTTCCGGACTCGAGAGCCTGAAAATGCTCACGTCTATTTTCTGCCATTCAGTGTTGTGATGATCGTCGAGTATTTGTTTCACCCGATTATCCGTGACAAAGCTGTTCTTGAGCGCACTGAGGTTGATTACGTTCGTATCATCTCTAATAGGTATCCATACTGGAACAGAAGCCTTGGAGCTGATCATGTCATGCTTTCTTGCCATGATTGGGGGCCAAGGGCTACATGGTATGTTAAACAACTGTACTTCGTTGCCATCCGCGTACTATGCAATGCGAATACATCCGAGCACTTTAACCCTAAGAAAGATGCATCATTTCCTGAAATCAATCTGGAAACTGGTGAAATAACAGGTCTAATTGGCGGCTTGCATCCATCCAAACGTACAATCCTAGCATTTTTTGCAGGACGAATGCACGGTCGAATTAGGCCATTTCTTTTCGAGCATTGGAAAGGAAAAGACAGAGATTTACTGGTCTATGAAAAACTCCCTGAAGAGCTTTCATACCATGACATGCTGAAGAAAAGCAAGTATTGCATTTGCCCTAGTGGACATGAAGTTGCCAGCCCAAGAATTGTGGAGGCAATTTATGCAGAGTGTGTTCCAGTTTTGATATCACAACACTATGTGCTGCCTTTCAGTGATGTGCTTAACTGGGACTCGTTTTCTGTTCAAGTTTCAGTGAGTGAAATTCCAAAACTTAAAGAAATCTTAATGGAAATACCTGAAGAGCAATATAGAAGAATGCAGGAAAGAGTGAAGCAGGTGCAAAGGCATTTTGTAGTGAATAATCCTCCCAAGAGATTTGATGTTTTCCATATGATTATTCATTCAATCTGGCTTAGAAGATTGAATGTACAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

410

Amino Acids

47.87

Weight (kDa)

8.08

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 81 - 361 5.9e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 624
AccIII TCCGGA 1 cut(s) 366
AciI CCGC 2 cut(s) 622, 726
AcsI RAATTY 1 cut(s) 1053
AcuI CTGAAG 4 cut(s) 104, 876, 902, 1110
AdeI CACNNNGTG 1 cut(s) 991
AfaI GTAC 4 cut(s) 608, 627, 748, 1221
AfiI CCNNNNNNNGG 4 cut(s) 222, 238, 366, 571
AgsI TTSAA 5 cut(s) 23, 95, 1037, 1197, 1216
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 7 cut(s) 98, 228, 280, 342, 464, 542, 862
AluI AGCT 7 cut(s) 98, 228, 280, 342, 464, 542, 862
Alw21I GWGCWC 1 cut(s) 654
Ama87I CYCGRG 1 cut(s) 372
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 2 cut(s) 575, 791
ApeKI GCWGC 4 cut(s) 107, 110, 280, 994
ApoI RAATTY 1 cut(s) 1053
ArsI GACNNNNNNTTYG 2 cut(s) 766, 798
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 299, 575
AsuHPI GGTGA 3 cut(s) 212, 434, 716
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 4 cut(s) 94, 97, 267, 981
BccI CCATC 2 cut(s) 626, 745
BciVI GTATCC 2 cut(s) 23, 525
BclI TGATCA 1 cut(s) 544
BfaI CTAG 3 cut(s) 114, 755, 909
BfuAI ACCTGC 1 cut(s) 1117
BfuI GTATCC 2 cut(s) 23, 525
BisI GCNGC 5 cut(s) 108, 111, 281, 727, 995
BlsI GCNGC 5 cut(s) 109, 112, 282, 728, 996
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 299, 575
BmiI GGNNCC 1 cut(s) 576
BmrI ACTGGG 1 cut(s) 1027
BmsI GCATC 4 cut(s) 160, 661, 683, 742
BmuI ACTGGG 1 cut(s) 1027
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 535, 578
BsaWI WCCGGW 2 cut(s) 222, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 238, 366, 571
Bse1I ACTGG 5 cut(s) 527, 706, 840, 968, 1022
Bse3DI GCAATG 2 cut(s) 8, 640
BseAI TCCGGA 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 535, 578
BseGI GGATG 4 cut(s) 618, 644, 733, 737
BseLI CCNNNNNNNGG 4 cut(s) 222, 238, 366, 571
BseMI GCAATG 2 cut(s) 8, 640
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 5 cut(s) 527, 706, 840, 968, 1022
BseXI GCAGC 4 cut(s) 94, 97, 267, 981
Bsh1236I CGCG 1 cut(s) 624
Bsh1285I CGRYCG 1 cut(s) 784
BshFI GGCC 2 cut(s) 577, 793
BsiEI CGRYCG 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 223, 367
BslFI GGGAC 2 cut(s) 342, 1034
BslI CCNNNNNNNGG 4 cut(s) 222, 238, 366, 571
BsmFI GGGAC 2 cut(s) 342, 1034
BsmI GAATGC 3 cut(s) 211, 780, 1113
BsnI GGCC 2 cut(s) 577, 793
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 654
Bsp13I TCCGGA 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 1219
Bsp143I GATC 3 cut(s) 16, 423, 544
BspACI CCGC 2 cut(s) 622, 726
BspANI GGCC 2 cut(s) 577, 793
BspCNI CTCAG 1 cut(s) 472
BspEI TCCGGA 1 cut(s) 366
BspFNI CGCG 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 576
BspMI ACCTGC 1 cut(s) 1117
BspQI GCTCTTC 2 cut(s) 852, 1086
BsrDI GCAATG 2 cut(s) 8, 640
BsrGI TGTACA 1 cut(s) 1219
BsrI ACTGG 5 cut(s) 527, 706, 840, 968, 1022
BssECI CCNNGG 2 cut(s) 535, 578
BssMI GATC 3 cut(s) 16, 423, 544
BssT1I CCWWGG 2 cut(s) 535, 578
Bst4CI ACNGT 3 cut(s) 299, 606, 782
Bst6I CTCTTC 4 cut(s) 264, 338, 852, 1086
BstAPI GCANNNNNTGC 3 cut(s) 764, 897, 953
BstAUI TGTACA 1 cut(s) 1219
BstC8I GCNNGC 2 cut(s) 731, 928
BstDEI CTNAG 4 cut(s) 338, 480, 663, 1205
BstF5I GGATG 4 cut(s) 618, 644, 733, 737
BstFNI CGCG 1 cut(s) 624
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 3 cut(s) 19, 426, 547
BstMBI GATC 3 cut(s) 16, 423, 544
BstMCI CGRYCG 1 cut(s) 784
BstMWI GCNNNNNNNGC 6 cut(s) 104, 116, 630, 764, 897, 953
BstNSI RCATGY 1 cut(s) 880
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 4 cut(s) 94, 97, 267, 981
BsuI GTATCC 2 cut(s) 23, 525
BsuRI GGCC 2 cut(s) 577, 793
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 4 cut(s) 618, 644, 733, 737
BtsIMutI CAGTG 4 cut(s) 418, 477, 1009, 1050
BveI ACCTGC 1 cut(s) 1117
Cac8I GCNNGC 2 cut(s) 731, 928
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 299, 575
Csp6I GTAC 4 cut(s) 607, 626, 747, 1220
CspCI CAANNNNNGTGG 2 cut(s) 921, 956
CviAII CATG 7 cut(s) 548, 553, 566, 588, 872, 877, 917
CviQI GTAC 4 cut(s) 607, 626, 747, 1220
DdeI CTNAG 4 cut(s) 338, 480, 663, 1205
DpnI GATC 3 cut(s) 18, 425, 546
DpnII GATC 3 cut(s) 16, 423, 544
DraI TTTAAA 1 cut(s) 253
DraIII CACNNNGTG 1 cut(s) 991
Eam1104I CTCTTC 4 cut(s) 264, 338, 852, 1086
EarI CTCTTC 4 cut(s) 264, 338, 852, 1086
Eco130I CCWWGG 2 cut(s) 535, 578
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 4 cut(s) 104, 876, 902, 1110
Eco88I CYCGRG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 978
EcoT14I CCWWGG 2 cut(s) 535, 578
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 535, 578
FaeI CATG 7 cut(s) 551, 556, 569, 591, 875, 880, 920
FalI AAGNNNNNCTT 4 cut(s) 87, 119, 453, 485
FaqI GGGAC 2 cut(s) 342, 1034
FatI CATG 7 cut(s) 547, 552, 565, 587, 871, 876, 916
FauNDI CATATG 1 cut(s) 1182
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 5 cut(s) 108, 111, 281, 727, 995
FokI GGATG 4 cut(s) 605, 631, 720, 724
Fsp4HI GCNGC 5 cut(s) 108, 111, 281, 727, 995
FspBI CTAG 3 cut(s) 114, 755, 909
GlaI GCGC 1 cut(s) 476
GluI GCNGC 5 cut(s) 108, 111, 281, 727, 995
HaeIII GGCC 2 cut(s) 577, 793
HapII CCGG 2 cut(s) 223, 367
HhaI GCGC 1 cut(s) 477
Hin1II CATG 7 cut(s) 551, 556, 569, 591, 875, 880, 920
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 4 cut(s) 41, 330, 370, 1022
HpaII CCGG 2 cut(s) 223, 367
HphI GGTGA 3 cut(s) 212, 434, 716
Hpy166II GTNNAC 2 cut(s) 265, 914
Hpy188I TCNGA 1 cut(s) 649
Hpy188III TCNNGA 6 cut(s) 20, 367, 374, 470, 683, 695
Hpy8I GTNNAC 2 cut(s) 265, 914
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 299, 606, 782
HpyCH4IV ACGT 3 cut(s) 393, 492, 745
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 116, 630, 764, 897, 953
HpyF3I CTNAG 4 cut(s) 338, 480, 663, 1205
HpySE526I ACGT 3 cut(s) 393, 492, 745
Hsp92II CATG 7 cut(s) 551, 556, 569, 591, 875, 880, 920
HspAI GCGC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 16, 423, 544
LguI GCTCTTC 2 cut(s) 852, 1086
LmnI GCTCC 2 cut(s) 225, 539
Lsp1109I GCAGC 4 cut(s) 94, 97, 267, 981
LweI GCATC 4 cut(s) 160, 661, 683, 742
MaeI CTAG 3 cut(s) 114, 755, 909
MaeII ACGT 3 cut(s) 393, 492, 745
MaeIII GTNAC 1 cut(s) 455
MalI GATC 3 cut(s) 18, 425, 546
MboI GATC 3 cut(s) 16, 423, 544
MboII GAAGA 8 cut(s) 97, 281, 325, 869, 895, 1103, 1116, 1221
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 5 cut(s) 720, 786, 936, 948, 1053
MlyI GAGTC 3 cut(s) 324, 364, 1016
MnlI CCTC 7 cut(s) 171, 242, 265, 319, 475, 937, 1167
Mph1103I ATGCAT 1 cut(s) 676
MroI TCCGGA 1 cut(s) 366
MseI TTAA 8 cut(s) 165, 236, 252, 597, 657, 1014, 1065, 1076
MspI CCGG 2 cut(s) 223, 367
Mva1269I GAATGC 3 cut(s) 211, 780, 1113
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 6 cut(s) 104, 116, 630, 764, 897, 953
NdeI CATATG 1 cut(s) 1182
NdeII GATC 3 cut(s) 16, 423, 544
NlaIII CATG 7 cut(s) 551, 556, 569, 591, 875, 880, 920
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 372
PaqCI CACCTGC 1 cut(s) 1117
PciSI GCTCTTC 2 cut(s) 852, 1086
PctI GAATGC 3 cut(s) 211, 780, 1113
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 5 cut(s) 109, 112, 282, 728, 996
PleI GAGTC 3 cut(s) 324, 364, 1016
PpsI GAGTC 3 cut(s) 324, 364, 1016
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 299, 575
RsaI GTAC 4 cut(s) 608, 627, 748, 1221
RsaNI GTAC 4 cut(s) 607, 626, 747, 1220
SapI GCTCTTC 2 cut(s) 852, 1086
SaqAI TTAA 8 cut(s) 165, 236, 252, 597, 657, 1014, 1065, 1076
SatI GCNGC 5 cut(s) 108, 111, 281, 727, 995
Sau3AI GATC 3 cut(s) 16, 423, 544
Sau96I GGNCC 2 cut(s) 299, 575
SchI GAGTC 3 cut(s) 324, 364, 1016
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 4 cut(s) 160, 661, 683, 742
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 372, 470
SmoI CTYRAG 2 cut(s) 372, 470
Sse9I AATT 5 cut(s) 720, 786, 936, 948, 1053
SsiI CCGC 2 cut(s) 622, 726
SspMI CTAG 3 cut(s) 114, 755, 909
StyI CCWWGG 2 cut(s) 535, 578
TaaI ACNGT 3 cut(s) 299, 606, 782
TaiI ACGT 3 cut(s) 396, 495, 748
TaqI TCGA 4 cut(s) 373, 429, 784, 804
TasI AATT 5 cut(s) 720, 786, 936, 948, 1053
TatI WGTACW 2 cut(s) 606, 1219
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 8 cut(s) 165, 236, 252, 597, 657, 1014, 1065, 1076
Tru9I TTAA 8 cut(s) 165, 236, 252, 597, 657, 1014, 1065, 1076
TscAI CASTG 4 cut(s) 418, 484, 1009, 1050
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 4 cut(s) 107, 110, 280, 994
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 8 cut(s) 17, 90, 281, 334, 855, 858, 933, 1181
TspGWI ACGGA 2 cut(s) 338, 443
TspRI CASTG 4 cut(s) 418, 484, 1009, 1050
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 1053
XceI RCATGY 1 cut(s) 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 3 cut(s) 114, 755, 909
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.