Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Reverse (-)

11534506 .. 11537120

Gene Structure 2615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTACTTTTCGGCTGTGAAGAAAGCACTTCTGTCTGTTTCAGGTTGTCTTCAAGATAACCCTAAGGTAGATGTAGCTAACTCTGTTGACCCTATTGCTCATCGGGGCTTTGGGCCTGGCTTTAATGCATCAGATTATCACTCAAGGAATTATTCTTCTAATCCCGGGCCTGAAAATATTGGAAGTGGTAACATGATGGCTATGGAAGAAGAGGTGGTATTCAAGTTGCTATGTCATGTTGATAAGGTTGGTAGTCTGATAGGGAAGGGTGGCTCTGTTATTCGGACTATGCAAAATGAAACTGGTGCATCATTTAAGATAGCTGATTGTGCACCTGATTCAGATGAGCGGGTTATCATCATATCTGCACAAGAGTTTAATGTTGGAAGTTCATTGCAGAATCCAGAGCAAGAATATTCCCCAGCACAGGAAGCTGTTGTTCGCGCCCATCATCGAATTGCGGAGATTGGCTTTGAGCCTGGTGCTGCAGTGGTTGCTAGGCTTCTTGTACATCCACAGCAGATTGGTTGTTTATTGGGTAAAGGAGGTTTCATTATTACAGAAATGAGAAGAGCTACAGGTGCTAGTATACGGATTTTTCCAAAGGAACAAGTTGAGAAGGGTATAGGAATAATCTCCTGGTGCTTTAGAAGCTTGCTGTCTGTACAGGATGCACTCTTTCATATAACAAGTAGGATTTGGGAAACAATTTTCCCTATGAGACCTCCTTATGCTAATTTCAGTCGCCCGCCCTATATGTCTCCATTTCCTGAGATGCCTCCCCCCTCCTTCAGACCGAGATTCCATCATGGAGTTGATCATTCTGCTTTTCCATCACAAACTCCAGATCATCAGCCTTCATTATCTCATGGTACGGATCACAACGGTCCAGCTCACATGGACCGAGTTCCCTATTCTTTTGGTAATGAGCGACCAGGATATGGTCCAACATTTGAGAGTCCTTCTCCAAGAGCATGGACTCCGAAGGTGGTACTCTTACACTTTGAACAACCTAATAGTTTTATTTTTACCGACTTGGGTGCGATACTTATAGGGAGTAAGCTGATGTTGGTTCGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

361

Amino Acids

39.56

Weight (kDa)

6.73

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	74 - 124	2e-11	KH domain
KH_1	PF00013	166 - 203	1.2e-06	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	444
AciI	CCGC	3 cut(s)	349, 461, 749
AclWI	GGATC	1 cut(s)	885
AcuI	CTGAAG	1 cut(s)	775
AfaI	GTAC	5 cut(s)	5, 510, 666, 874, 993
AfiI	CCNNNNNNNGG	2 cut(s)	427, 941
AgsI	TTSAA	3 cut(s)	53, 223, 1007
AjnI	CCWGG	4 cut(s)	115, 478, 638, 934
AluBI	AGCT	7 cut(s)	77, 323, 434, 575, 654, 893, 1063
AluI	AGCT	7 cut(s)	77, 323, 434, 575, 654, 893, 1063
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	715, 765
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	885
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	113, 167
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	5 cut(s)	113, 167, 887, 901, 944
AsuC2I	CCSGG	2 cut(s)	165, 166
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	887, 901, 944
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	4 cut(s)	190, 456, 813, 841
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	4 cut(s)	117, 480, 640, 936
BclI	TGATCA	1 cut(s)	817
BcnI	CCSGG	2 cut(s)	165, 166
BcoDI	GTCTC	2 cut(s)	715, 765
BfaI	CTAG	2 cut(s)	498, 585
BfmI	CTRYAG	2 cut(s)	486, 576
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	6 cut(s)	117, 165, 166, 480, 640, 936
Bme18I	GGWCC	3 cut(s)	887, 901, 944
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	5 cut(s)	113, 167, 887, 901, 944
BmrFI	CCNGG	6 cut(s)	117, 165, 166, 480, 640, 936
BmsI	GCATC	4 cut(s)	137, 317, 661, 765
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	949, 981
BpmI	CTGGAG	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	2 cut(s)	165, 166
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 941
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	4 cut(s)	117, 480, 640, 936
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	511, 676
BseLI	CCNNNNNNNGG	2 cut(s)	427, 941
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	115, 169
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	427, 941
BsmAI	GTCTC	2 cut(s)	715, 765
BsnI	GGCC	2 cut(s)	115, 169
Bso31I	GGTCTC	1 cut(s)	715
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	2 cut(s)	508, 664
Bsp143I	GATC	3 cut(s)	817, 847, 877
BspACI	CCGC	3 cut(s)	349, 461, 749
BspANI	GGCC	2 cut(s)	115, 169
BspCNI	CTCAG	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	885
BspQI	GCTCTTC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	715
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	392
BsrGI	TGTACA	2 cut(s)	508, 664
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	817, 847, 877
BssNAI	GTATAC	1 cut(s)	590
Bst1107I	GTATAC	1 cut(s)	590
Bst2UI	CCWGG	4 cut(s)	117, 480, 640, 936
Bst4CI	ACNGT	1 cut(s)	887
Bst6I	CTCTTC	2 cut(s)	204, 565
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	2 cut(s)	508, 664
BstC8I	GCNNGC	2 cut(s)	656, 749
BstDEI	CTNAG	2 cut(s)	63, 771
BstF5I	GGATG	2 cut(s)	511, 676
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	820, 850, 880
BstMAI	GTCTC	2 cut(s)	715, 765
BstMBI	GATC	3 cut(s)	817, 847, 877
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 431, 494, 581, 651
BstNI	CCWGG	4 cut(s)	117, 480, 640, 936
BstSCI	CCNGG	6 cut(s)	115, 163, 164, 478, 638, 934
BstSFI	CTRYAG	2 cut(s)	486, 576
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	975
BstZ17I	GTATAC	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	115, 169
BtsCI	GGATG	2 cut(s)	511, 676
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	656, 749
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	5 cut(s)	113, 167, 887, 901, 944
Cfr9I	CCCGGG	1 cut(s)	164
Csp6I	GTAC	5 cut(s)	4, 509, 665, 873, 992
CviAII	CATG	6 cut(s)	193, 236, 809, 869, 898, 975
CviQI	GTAC	5 cut(s)	4, 509, 665, 873, 992
DdeI	CTNAG	2 cut(s)	63, 771
DpnI	GATC	3 cut(s)	819, 849, 879
DpnII	GATC	3 cut(s)	817, 847, 877
Eam1104I	CTCTTC	2 cut(s)	204, 565
EarI	CTCTTC	2 cut(s)	204, 565
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	3 cut(s)	887, 901, 944
Eco57I	CTGAAG	1 cut(s)	775
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	115, 478, 638, 934
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	6 cut(s)	196, 239, 812, 872, 901, 978
FatI	CATG	6 cut(s)	192, 235, 808, 868, 897, 974
FauI	CCCGC	2 cut(s)	342, 756
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	2 cut(s)	498, 683
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	498, 585
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	115, 169
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	6 cut(s)	196, 239, 812, 872, 901, 978
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	5 cut(s)	338, 400, 801, 958, 979
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	3 cut(s)	88, 332, 590
Hpy188I	TCNGA	6 cut(s)	133, 258, 285, 343, 794, 984
Hpy188III	TCNNGA	4 cut(s)	53, 404, 770, 845
Hpy8I	GTNNAC	3 cut(s)	88, 332, 590
HpyAV	CCTTC	6 cut(s)	259, 613, 799, 867, 972, 979
HpyCH4III	ACNGT	1 cut(s)	887
HpyCH4V	TGCA	8 cut(s)	128, 292, 308, 332, 368, 397, 488, 674
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 431, 494, 581, 651
HpyF3I	CTNAG	2 cut(s)	63, 771
Hsp92II	CATG	6 cut(s)	196, 239, 812, 872, 901, 978
HspAI	GCGC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	817, 847, 877
LguI	GCTCTTC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	4 cut(s)	137, 317, 661, 765
MaeI	CTAG	2 cut(s)	498, 585
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	819, 849, 879
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	3 cut(s)	817, 847, 877
MboII	GAAGA	6 cut(s)	31, 41, 147, 218, 221, 582
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	4 cut(s)	148, 456, 708, 736
MlyI	GAGTC	2 cut(s)	967, 973
MmeI	TCCRAC	2 cut(s)	364, 971
MnlI	CCTC	5 cut(s)	205, 539, 735, 789, 796
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	3 cut(s)	123, 315, 378
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	6 cut(s)	117, 165, 166, 480, 640, 936
MvaI	CCWGG	4 cut(s)	117, 480, 640, 936
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	329, 431, 494, 581, 651
NciI	CCSGG	2 cut(s)	165, 166
NdeII	GATC	3 cut(s)	817, 847, 877
NlaIII	CATG	6 cut(s)	196, 239, 812, 872, 901, 978
NsiI	ATGCAT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	338, 400, 801
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	966, 973
PpsI	GAGTC	2 cut(s)	966, 973
Psp6I	CCWGG	4 cut(s)	115, 478, 638, 934
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	4 cut(s)	115, 478, 638, 934
PspPI	GGNCC	5 cut(s)	113, 167, 887, 901, 944
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	5 cut(s)	5, 510, 666, 874, 993
RsaNI	GTAC	5 cut(s)	4, 509, 665, 873, 992
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	123, 315, 378
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	817, 847, 877
Sau96I	GGNCC	5 cut(s)	113, 167, 887, 901, 944
SchI	GAGTC	2 cut(s)	967, 973
ScrFI	CCNGG	6 cut(s)	117, 165, 166, 480, 640, 936
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	4 cut(s)	137, 317, 661, 765
SfcI	CTRYAG	2 cut(s)	486, 576
SinI	GGWCC	3 cut(s)	887, 901, 944
SmaI	CCCGGG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	4 cut(s)	148, 456, 708, 736
SsiI	CCGC	3 cut(s)	349, 461, 749
SspI	AATATT	2 cut(s)	178, 416
SspMI	CTAG	2 cut(s)	498, 585
StyD4I	CCNGG	6 cut(s)	115, 163, 164, 478, 638, 934
TaaI	ACNGT	1 cut(s)	887
TaqI	TCGA	1 cut(s)	454
TaqII	GACCGA	2 cut(s)	811, 918
TasI	AATT	4 cut(s)	148, 456, 708, 736
TatI	WGTACW	3 cut(s)	3, 508, 664
TfiI	GAWTC	3 cut(s)	338, 400, 801
Tru1I	TTAA	3 cut(s)	123, 315, 378
Tru9I	TTAA	3 cut(s)	123, 315, 378
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	5 cut(s)	312, 381, 541, 671, 849
TspGWI	ACGGA	2 cut(s)	607, 890
TspMI	CCCGGG	1 cut(s)	164
TspRI	CASTG	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	3 cut(s)	887, 901, 944
XmaI	CCCGGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	2 cut(s)	498, 585
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.