Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Reverse (-)

11661357 .. 11662223

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTAGGCCCTCCGCGAAGCACACATCAGCTCGGCTGCTGCTGTTGATATGCGTTGGGCAGCTGGGGATTGCTCTGATTGCCGATTTCCTCTGGTCTTCCTCTCCTCGCTTCATCCATTCTTATAACGACATTGCATACAATTGGGCTCCTCCTGTCGATATCTCAAAACATAAAATCATCCCCTCCCCCAAAAAGACTAGCCAAGAAACCCCCCACCAAGGGGAGCATCAATTACAAAAACGATACTGCTCCTGGGAGAGTTTCATCAGCAACCTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

9.18

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	221, 222, 223
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	32, 64
AluI	AGCT	2 cut(s)	32, 64
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	37, 40, 61
AspS9I	GGNCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	24, 27, 73
BciT130I	CCWGG	1 cut(s)	256
BfaI	CTAG	2 cut(s)	6, 201
BisI	GCNGC	3 cut(s)	38, 41, 62
BlsI	GCNGC	3 cut(s)	39, 42, 63
Bme1390I	CCNGG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	220, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 222, 223
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	220, 255
BseGI	GGATG	2 cut(s)	114, 180
BseLI	CCNNNNNNNGG	3 cut(s)	221, 222, 223
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	96, 141
BseXI	GCAGC	3 cut(s)	24, 27, 73
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	221, 222, 223
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	220, 255
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	114, 180
BstFNI	CGCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 279
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	24, 27, 73
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	114, 180
Cfr13I	GGNCC	1 cut(s)	9
CviJI	RGCY	7 cut(s)	5, 10, 32, 37, 64, 149, 204
CviKI_1	RGCY	7 cut(s)	5, 10, 32, 37, 64, 149, 204
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	220
FaiI	YATR	4 cut(s)	52, 126, 139, 174
Fnu4HI	GCNGC	3 cut(s)	38, 41, 62
FokI	GGATG	2 cut(s)	101, 167
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	38, 41, 62
FspBI	CTAG	2 cut(s)	6, 201
GluI	GCNGC	3 cut(s)	38, 41, 62
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 279
LmnI	GCTCC	3 cut(s)	154, 226, 257
LpnPI	CCDG	5 cut(s)	50, 79, 168, 241, 268
Lsp1109I	GCAGC	3 cut(s)	24, 27, 73
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	6, 201
MboII	GAAGA	1 cut(s)	90
MfeI	CAATTG	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	142, 233
MnlI	CCTC	6 cut(s)	22, 101, 112, 117, 162, 196
MspA1I	CMGCKG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	80, 279
NlaIV	GGNNCC	1 cut(s)	150
NmeAIII	GCCGAG	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	39, 42, 63
PsiI	TTATAA	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	64
SatI	GCNGC	3 cut(s)	38, 41, 62
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	3 cut(s)	34, 66, 279
SfaNI	GCATC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	142, 233
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	2 cut(s)	6, 201
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	220
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	142, 233
TseI	GCWGC	3 cut(s)	37, 40, 61
TspDTI	ATGAA	2 cut(s)	103, 256
XspI	CTAG	2 cut(s)	6, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.