pycom17g14380

complex I intermediate-associated protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005050
Physical Location & Seq
Reverse (-)
11905867 .. 11907034
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGCGGTCCAAAAAGTTTGACGGCTTCATTGATTTGGACCCATACGATACCATAGCACTGAAAGTTAAAGGAGATGGAAGGTGCTACATATCTACGATCTATACAGAAAATTGGGTAAATTCGCCTGGGCAAGAAGAAGATAATTCGTGGCAGGCTTTTGTCTTTGTACCAAAAGACAACTGGTACATTGCAAAGATTCCTCTTGCTCGGTATCTACCAACATGGAGAGGAAATGTTATAGATGCAGAAATGGAAATGAATCCTTCTCGCGTCGTTGGGATGTCTCTATCGGTCAATGCAGAAGGTGGTCTCCCAGGTGCTAGAACCGGAGCGGGTGATTTCAAGCTCGAAATTGATTGGATCAAGGCGTTACGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CIA30

Protein Analysis

127

Amino Acids

14.24

Weight (kDa)

5.13

Isoelectric Point (pI)

24.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 1 - 118 5.4e-25 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 4, 332
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 2 cut(s) 168, 185
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 2 cut(s) 124, 313
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 288, 314
AlwI GGATC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 6, 37
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 6, 37
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 126, 315
BcoDI GTCTC 2 cut(s) 288, 314
BfaI CTAG 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 126, 315
Bme18I GGWCC 2 cut(s) 6, 37
BmgT120I GGNCC 2 cut(s) 6, 37
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 126, 315
BmsI GCATC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 125, 313
BsaWI WCCGGW 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 126, 315
BseDI CCNNGG 2 cut(s) 125, 313
BseGI GGATG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 288, 314
Bso31I GGTCTC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 96, 360
BspACI CCGC 2 cut(s) 4, 332
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 125, 313
BssMI GATC 2 cut(s) 96, 360
Bst2UI CCWGG 2 cut(s) 126, 315
BstC8I GCNNGC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 99, 363
BstMAI GTCTC 2 cut(s) 288, 314
BstMBI GATC 2 cut(s) 96, 360
BstNI CCWGG 2 cut(s) 126, 315
BstSCI CCNGG 2 cut(s) 124, 313
BstUI CGCG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 6, 37
CseI GACGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 167, 184
CviAII CATG 1 cut(s) 222
CviJI RGCY 3 cut(s) 24, 155, 346
CviKI_1 RGCY 3 cut(s) 24, 155, 346
CviQI GTAC 2 cut(s) 167, 184
DpnI GATC 2 cut(s) 98, 362
DpnII GATC 2 cut(s) 96, 360
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 6, 37
EcoRII CCWGG 2 cut(s) 124, 313
FaeI CATG 1 cut(s) 225
FaiI YATR 7 cut(s) 43, 53, 89, 102, 223, 239, 379
FatI CATG 1 cut(s) 221
FauI CCCGC 1 cut(s) 325
FokI GGATG 1 cut(s) 292
FspBI CTAG 1 cut(s) 321
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 225
HinfI GANTC 2 cut(s) 196, 259
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 72, 273, 296
HpyCH4V TGCA 3 cut(s) 191, 245, 299
Hsp92II CATG 1 cut(s) 225
Kzo9I GATC 2 cut(s) 96, 360
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 7 cut(s) 111, 137, 138, 166, 300, 327, 340
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 369
MalI GATC 2 cut(s) 98, 362
MbiI CCGCTC 1 cut(s) 332
MboI GATC 2 cut(s) 96, 360
MboII GAAGA 2 cut(s) 146, 149
MluCI AATT 4 cut(s) 109, 118, 142, 351
MnlI CCTC 2 cut(s) 210, 221
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 126, 315
MvaI CCWGG 2 cut(s) 126, 315
MvnI CGCG 1 cut(s) 270
NdeII GATC 2 cut(s) 96, 360
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 196, 259
Psp6I CCWGG 2 cut(s) 124, 313
PspGI CCWGG 2 cut(s) 124, 313
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 6, 37
RsaI GTAC 2 cut(s) 168, 185
RsaNI GTAC 2 cut(s) 167, 184
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 96, 360
Sau96I GGNCC 2 cut(s) 6, 37
ScrFI CCNGG 2 cut(s) 126, 315
SetI ASST 4 cut(s) 83, 307, 319, 348
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 2 cut(s) 6, 37
Sse9I AATT 4 cut(s) 109, 118, 142, 351
SsiI CCGC 2 cut(s) 4, 332
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 124, 313
TaqI TCGA 1 cut(s) 348
TaqII GACCGA 1 cut(s) 280
TasI AATT 4 cut(s) 109, 118, 142, 351
TfiI GAWTC 2 cut(s) 196, 259
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 16, 272
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 6, 37
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.