Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003542

Physical Location & Seq

Genomic Coordinates Reverse (-)

15111405 .. 15113491

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCCAGACGCTTGGTACTTACGACCTGATAATACAACAGATATGTATAGCCCAAAAAAGCCTGCCTTGTCCGGCCTTATCCATTTGATTACTGCTCTCATCCTTTATGGATATCTAATACCCATCTCTCTCTATGTTTCAATTGAGGTTGTGAAGGTTTTGCAAGCAAGCTTCATTAACCAAGACTTACTCATGTATGATGAAGAGACTGGGAATCCTGCTCAAGCACGGACATCAAATTTGAATGAAGAGTTAGGCCAGGTAGACACAATCCTTTCTGATAAAACTGGCACGTTAACCTGCAACCAGATGGACTTTCTGAAGTGTTCCATTGCTGGTACTGCATATGGTGTCCGTTCCAGTGAAGTTGAACTTGCAGCAGCAAAACAGATGGCTAGTGACCTTGAAGACCATGATGATGAGCTTGCCAATTTTCCCATGCGAAAACATAATACACGTTTTTCATGGGAGAAAGGAATAGGATCAGAAATTGAGCTAGAGACAGTAGTTACGTCCAATGAAGAAAAGGATCTGAAACGTGCCATAAAGGGGTTTAGCTTTGAGGACAGCCGCCTCATGGTGGGAAATTGGTTGAATGAGTCCAGCCCTGATGTGATTTCATTGTTTTTACGGATATTAGCAGTTTGCCACACTGCAATTCCCGAGCTAAATGAAGAAACCGGCAATTATACATATGAAGCAGAGTCACCTGATGAAGCAGCTTTTCTTGTTGCAGCAAGAGAGTTAGGATTTGAATTTTGTAAAAGAAATCAGTCAGGTGTAATTGTCCGTGAAAGGTATCATCATTCCGGACAACCAGTGGAAAGGGAGTACAAAATCTTAAATCTATTGGAATTCACTAGCAAAAGGAAGCGTATGTCTGTAATTGTGAGAGATGAAGATGGACAGCTTTCACTTATGTGCAAAGGTGCTGACAGCATAATTTTTGATCGACTTTCAAAGAATGGAAGAATGTATGAGGAAGCTACTACTAAGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACATTGGCACTTGCTTATAGAAAGCTTGAGGAGTCTGAGTACTCTGCTTGGAGCAGTGAGTTTCAGAAAGCAAAAACGTCTATTGGGGCTGATAGGGACGGAATGCTTGAGCGAGTAGCAGATAAGATGGAAAGAGACTTGATCCTTGTTGGTGCTACAGCTGTTGAGGACAAATTGCAAAAAGGGGTGCCGCAGTGCATAGACAATCTCGCACAAGCTGGTCTTAAGATCTGGGTTTTGACGGGAGACAAGATGGAAACTGCAATCAACATAGGATTTGCATGTAGTTTGCTCCGACAGGGCATGAAGCAGATCTGTATATCAACAGCAAATTTAGACACGTTGGGACAAGATAGCAAAGAGACTGTCTTTTCACTAATGAGCAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

474

Amino Acids

53.02

Weight (kDa)

4.99

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	209 - 404	3e-23	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17500 AT1G17500 AT1G54280 AT1G54280 AT1G54280 AT1G72700 AT1G72700 AT1G72700 AT3G13900 AT3G13900 AT3G13900
fragaria_vesca	FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000
malus_domestica	MD09G1190200.v1.1 MD17G1173300.v1.1
prunus_persica	Prupe.3G046100_v2.0.a1 Prupe.3G046100_v2.0.a1
pyrus_communis	pycom09g10670 pycom17g17330
rosa_chinensis	RchiOBHm_Chr2g0143971
rosa_laevigata	RLG00000020069
rosa_multiflora	Rmu_ssc0000393.1_g000036
rosa_roxburghii	Rroxscaffold_2G00101430
rosa_rugosa	Rorug02G0385400 Rorug02G0385500
rosa_samantha	Rh2AG438000 Rh2BG446400
rosa_wichuraiana	Rw2G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	1216
AccI	GTMKAC	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	2 cut(s)	571, 1220
AclWI	GGATC	3 cut(s)	490, 537, 1165
AcsI	RAATTY	4 cut(s)	238, 755, 854, 1360
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	5 cut(s)	17, 340, 833, 1030, 1070
AfiI	CCNNNNNNNGG	3 cut(s)	549, 577, 580
AflII	CTTAAG	1 cut(s)	1253
AflIII	ACRYGT	2 cut(s)	455, 1368
AgsI	TTSAA	8 cut(s)	141, 244, 371, 407, 595, 755, 960, 1003
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	919
Alw26I	GTCTC	5 cut(s)	200, 494, 1158, 1269, 1385
AlwI	GGATC	3 cut(s)	490, 537, 1165
Ama87I	CYCGRG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	809
AoxI	GGCC	2 cut(s)	73, 256
ApeKI	GCWGC	4 cut(s)	377, 380, 719, 734
ApoI	RAATTY	4 cut(s)	238, 755, 854, 1360
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 255, 1380, 1412
AsuHPI	GGTGA	1 cut(s)	699
AvaI	CYCGRG	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	1216
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	389, 392, 731, 746
BccI	CCATC	6 cut(s)	131, 304, 385, 896, 1150, 1276
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	5 cut(s)	200, 494, 1158, 1269, 1385
BfaI	CTAG	3 cut(s)	396, 497, 861
BfmI	CTRYAG	1 cut(s)	1185
BfrI	CTTAAG	1 cut(s)	1253
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	2 cut(s)	1257, 1341
BisI	GCNGC	6 cut(s)	378, 381, 571, 720, 735, 1220
BlsI	GCNGC	6 cut(s)	379, 382, 572, 721, 736, 1221
BmcAI	AGTACT	1 cut(s)	1070
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	662
BmiI	GGNNCC	1 cut(s)	1218
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	3 cut(s)	207, 1076, 1157
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 577, 580
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	4 cut(s)	214, 292, 360, 818
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	549, 577, 580
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	1056
BseNI	ACTGG	4 cut(s)	214, 292, 360, 818
BseRI	GAGGAG	1 cut(s)	1073
BseXI	GCAGC	4 cut(s)	389, 392, 731, 746
BseYI	CCCAGC	1 cut(s)	1019
BshFI	GGCC	2 cut(s)	75, 258
BshNI	GGYRCC	1 cut(s)	1216
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	3 cut(s)	72, 681, 810
BslFI	GGGAC	2 cut(s)	1139, 1389
BslI	CCNNNNNNNGG	3 cut(s)	549, 577, 580
BsmAI	GTCTC	5 cut(s)	200, 494, 1158, 1269, 1385
BsmFI	GGGAC	2 cut(s)	1139, 1389
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	2 cut(s)	75, 258
BsoBI	CYCGRG	1 cut(s)	662
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
BspACI	CCGC	2 cut(s)	571, 1220
BspANI	GGCC	2 cut(s)	75, 258
BspCNI	CTCAG	1 cut(s)	1057
BspEI	TCCGGA	1 cut(s)	809
BspLI	GGNNCC	1 cut(s)	1218
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	3 cut(s)	490, 537, 1165
BspT107I	GGYRCC	1 cut(s)	1216
BspTI	CTTAAG	1 cut(s)	1253
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	4 cut(s)	214, 292, 360, 818
BssAI	RCCGGY	1 cut(s)	680
BssMI	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	505, 1396
Bst6I	CTCTTC	2 cut(s)	198, 243
BstAFI	CTTAAG	1 cut(s)	1253
BstC8I	GCNNGC	5 cut(s)	63, 165, 169, 426, 1415
BstDEI	CTNAG	2 cut(s)	993, 1065
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	6 cut(s)	485, 532, 952, 1173, 1260, 1344
BstMAI	GTCTC	5 cut(s)	200, 494, 1158, 1269, 1385
BstMBI	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	1314
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	1185
BstV1I	GCAGC	4 cut(s)	389, 392, 731, 746
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	3 cut(s)	529, 1257, 1341
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	3 cut(s)	529, 1257, 1341
BsuRI	GGCC	2 cut(s)	75, 258
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	3 cut(s)	651, 1090, 1229
BtsIMutI	CAGTG	5 cut(s)	367, 651, 825, 1090, 1229
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	5 cut(s)	63, 165, 169, 426, 1415
Cfr10I	RCCGGY	1 cut(s)	680
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	5 cut(s)	16, 339, 832, 1029, 1069
CviAII	CATG	7 cut(s)	193, 413, 439, 465, 577, 1311, 1333
CviQI	GTAC	5 cut(s)	16, 339, 832, 1029, 1069
DdeI	CTNAG	2 cut(s)	993, 1065
DpnI	GATC	6 cut(s)	484, 531, 951, 1172, 1259, 1343
DpnII	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
Eam1104I	CTCTTC	2 cut(s)	198, 243
EarI	CTCTTC	2 cut(s)	198, 243
Eco32I	GATATC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	113
FaeI	CATG	7 cut(s)	196, 416, 442, 468, 580, 1314, 1336
FalI	AAGNNNNNCTT	6 cut(s)	50, 82, 357, 389, 1236, 1268
FaqI	GGGAC	2 cut(s)	1139, 1389
FatI	CATG	7 cut(s)	192, 412, 438, 464, 576, 1310, 1332
FauNDI	CATATG	2 cut(s)	346, 694
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	6 cut(s)	378, 381, 571, 720, 735, 1220
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	6 cut(s)	378, 381, 571, 720, 735, 1220
FspBI	CTAG	3 cut(s)	396, 497, 861
GluI	GCNGC	6 cut(s)	378, 381, 571, 720, 735, 1220
GsaI	CCCAGC	1 cut(s)	1023
HaeIII	GGCC	2 cut(s)	75, 258
HapII	CCGG	3 cut(s)	72, 681, 810
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	7 cut(s)	196, 416, 442, 468, 580, 1314, 1336
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	2 cut(s)	169, 1052
HinfI	GANTC	4 cut(s)	214, 599, 704, 1061
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	3 cut(s)	72, 681, 810
HphI	GGTGA	1 cut(s)	699
Hpy166II	GTNNAC	2 cut(s)	265, 297
Hpy188I	TCNGA	7 cut(s)	280, 321, 487, 534, 1066, 1095, 1325
Hpy188III	TCNNGA	2 cut(s)	662, 810
Hpy8I	GTNNAC	2 cut(s)	265, 297
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	505, 1396
HpyCH4IV	ACGT	6 cut(s)	293, 457, 512, 538, 1106, 1370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	993, 1065
HpySE526I	ACGT	6 cut(s)	293, 457, 512, 538, 1106, 1370
Hsp92II	CATG	7 cut(s)	196, 416, 442, 468, 580, 1314, 1336
Kpn2I	TCCGGA	1 cut(s)	809
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
LmnI	GCTCC	2 cut(s)	1080, 1326
Lsp1109I	GCAGC	4 cut(s)	389, 392, 731, 746
MaeI	CTAG	3 cut(s)	396, 497, 861
MaeII	ACGT	6 cut(s)	293, 457, 512, 538, 1106, 1370
MaeIII	GTNAC	3 cut(s)	398, 508, 705
MalI	GATC	6 cut(s)	484, 531, 951, 1172, 1259, 1343
MboI	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
MboII	GAAGA	7 cut(s)	215, 260, 419, 533, 686, 911, 981
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	3 cut(s)	529, 1257, 1341
MlyI	GAGTC	3 cut(s)	608, 713, 1070
MmeI	TCCRAC	1 cut(s)	1348
MnlI	CCTC	6 cut(s)	139, 556, 584, 973, 1051, 1189
MroI	TCCGGA	1 cut(s)	809
MseI	TTAA	4 cut(s)	177, 296, 842, 1254
MslI	CAYNNNNRTG	3 cut(s)	417, 919, 1002
MspA1I	CMGCKG	1 cut(s)	1190
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	3 cut(s)	72, 681, 810
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeI	CATATG	2 cut(s)	346, 694
NdeII	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
NlaIII	CATG	7 cut(s)	196, 416, 442, 468, 580, 1314, 1336
NlaIV	GGNNCC	1 cut(s)	1218
NmuCI	GTSAC	2 cut(s)	398, 705
NspI	RCATGY	1 cut(s)	1314
OliI	CACNNNNGTG	1 cut(s)	919
PctI	GAATGC	1 cut(s)	1137
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	6 cut(s)	379, 382, 572, 721, 736, 1221
PleI	GAGTC	3 cut(s)	607, 712, 1069
PpsI	GAGTC	3 cut(s)	607, 712, 1069
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	1218
PsuI	RGATCY	3 cut(s)	529, 1257, 1341
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	5 cut(s)	17, 340, 833, 1030, 1070
RsaNI	GTAC	5 cut(s)	16, 339, 832, 1029, 1069
RseI	CAYNNNNRTG	3 cut(s)	417, 919, 1002
SaqAI	TTAA	4 cut(s)	177, 296, 842, 1254
SatI	GCNGC	6 cut(s)	378, 381, 571, 720, 735, 1220
Sau3AI	GATC	6 cut(s)	482, 529, 949, 1170, 1257, 1341
ScaI	AGTACT	1 cut(s)	1070
SchI	GAGTC	3 cut(s)	608, 713, 1070
ScrFI	CCNGG	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	1185
SmiMI	CAYNNNNRTG	3 cut(s)	417, 919, 1002
SmlI	CTYRAG	4 cut(s)	222, 1055, 1136, 1253
SmoI	CTYRAG	4 cut(s)	222, 1055, 1136, 1253
SsiI	CCGC	2 cut(s)	571, 1220
SspMI	CTAG	3 cut(s)	396, 497, 861
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	505, 1396
TaiI	ACGT	6 cut(s)	296, 460, 515, 541, 1109, 1373
TaqI	TCGA	1 cut(s)	952
TatI	WGTACW	2 cut(s)	831, 1068
TauI	GCSGC	2 cut(s)	573, 1222
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	4 cut(s)	177, 296, 842, 1254
Tru9I	TTAA	4 cut(s)	177, 296, 842, 1254
TscAI	CASTG	5 cut(s)	367, 658, 825, 1090, 1229
TseFI	GTSAC	2 cut(s)	398, 705
TseI	GCWGC	4 cut(s)	377, 380, 719, 734
Tsp45I	GTSAC	2 cut(s)	398, 705
TspGWI	ACGGA	5 cut(s)	244, 344, 646, 779, 1143
TspRI	CASTG	5 cut(s)	367, 658, 825, 1090, 1229
Vha464I	CTTAAG	1 cut(s)	1253
XapI	RAATTY	4 cut(s)	238, 755, 854, 1360
XceI	RCATGY	1 cut(s)	1314
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	3 cut(s)	396, 497, 861
ZrmI	AGTACT	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.