Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005825

Physical Location & Seq

Genomic Coordinates Forward (+)

16493727 .. 16495805

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18960.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAAGCCGTTTCTTGAGCGCAGCTTTTGGTTTGGTTTTGGCTTTTGCGTTTGTGATTGGAGGAAATTATGCACAAGAGTCAACTACACTTGTTCCGGCAATCATGACTTTTGGAGACTCAGCAGTTGATGTGGGCAACAATAACTACCTCCCTACCATTTTCAAGGCCGATTACCCTCCTTATGGAAGGGACTATGTGAACCATCAGCCTACTGGGAGGTTTTGCAATGGCAAACTGGCCACTGACATCACTGCTGACACTCTAGGGTTCACTACTTATCCGCCGGCGTACTTTAGCCCACAAGCATCAGGGAAGAACCTTCTGATCGGAGCCAACTTCGCTTCAGCTGCATCCGGTTACGATGATAAAGCAGCAACCTTAAGTCATGCAATCCCATTGTCCCAGCAGCTGCAATATTACAAGGAGTACCAGACGAAGCTTGCCACGGTAGCAGGCAGCATGAAAGCCGCATCGATCATCAAGGATGCTCTCTATTTACTGAGTGCCGGAAACAGTGACTTTCTTCAGAATTACTACGTCAACCCTTTTGTTAACAAAGTCTACACTCCCGATCAGTATGGTTCCATCCTTGTTGGTGTCTTCCAAGGCTTCATTACGGATTTGTATCACTTGGGAGCCAGGAAGATCGGTGTGACCTCACTCCCTCCATTGGGTTGCCTCCCGGCTGCAATCACCTTATTTGGAAACCATGAGCAAGGATGCGTTGCTAGAATCAACTCCGACGCCCAAGGGTTTAACAAGAAGATAACCTCTGCCGCAGGCAATCTCCAAAAGCAACTTTCAGGCCTTAAAATCGTCATCTTCGACATTTACAAGCCTCTCTACGATGTCATTAAAGCCCCAGCAAATTACGGATTCGCCGAAGCAAGAAGAGGTTGCTGTGGAACAGGAATCGTAGAGACAACGTCATTGCTGTGCAATCCACACTCAGTTGGAACTTGTTCTAACGCGACTCAATACGTGTTTTGGGATAGCGTCCATCCATCTCAAGCCGCTAACCAAGTTCTTGCCGATGCATTGATCATCCAAGGCATCTCCCTCATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

358

Amino Acids

38.24

Weight (kDa)

6.98

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16370
fragaria_vesca	FvH4_6g32640
malus_domestica	MD09G1199700.v1.1 MD17G1180300.v1.1
prunus_persica	Prupe.3G056200_v2.0.a1 Prupe.3G056200_v2.0.a1
pyrus_communis	pycom09g11690 pycom17g18960
rosa_chinensis	RchiOBHm_Chr2g0141141 RchiOBHm_Chr2g0141171
rosa_laevigata	RLG00000019916 RLG00000019917
rosa_multiflora	Rmu_sc0005507.1_g000049 Rmu_sc0006556.1_g000002 Rmu_sc0006556.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104160 Rroxscaffold_2G00104180
rosa_rugosa	Rorug02G0367500 Rorug02G0367500
rosa_samantha	Rh2AG418400 Rh2AG418500 Rh2BG428300 Rh2CG404800 Rh2CG404900
rosa_wichuraiana	Rw0G019760 Rw0G019770 Rw2G034310 Rw2G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	974
AciI	CCGC	4 cut(s)	284, 471, 780, 1017
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	330, 512
AcyI	GRCGYC	1 cut(s)	747
AfaI	GTAC	2 cut(s)	293, 431
AfiI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
AflII	CTTAAG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	4 cut(s)	26, 350, 412, 442
AluI	AGCT	4 cut(s)	26, 350, 412, 442
Alw26I	GTCTC	2 cut(s)	111, 917
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	3 cut(s)	168, 240, 808
ApeKI	GCWGC	7 cut(s)	23, 350, 374, 409, 412, 459, 689
Asp700I	GAANNNNTTC	1 cut(s)	964
AspLEI	GCGC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	7 cut(s)	35, 337, 386, 399, 421, 471, 676
BccI	CCATC	4 cut(s)	213, 596, 1011, 1015
BciT130I	CCWGG	1 cut(s)	643
BclI	TGATCA	1 cut(s)	1044
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	111, 917
BfaI	CTAG	2 cut(s)	266, 732
BfrI	CTTAAG	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	643, 686
BmiI	GGNNCC	3 cut(s)	334, 586, 640
BmrFI	CCNGG	2 cut(s)	643, 686
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	7 cut(s)	317, 362, 478, 482, 713, 1027, 1065
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	595
BpuEI	CTTGAG	2 cut(s)	37, 996
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	985
BsaBI	GATNNNNATC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	4 cut(s)	447, 607, 751, 1051
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 673, 674
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	220, 243
Bse3DI	GCAATG	2 cut(s)	235, 932
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	643
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	4 cut(s)	447, 607, 751, 1051
BseGI	GGATG	6 cut(s)	353, 493, 588, 728, 1003, 1047
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
BseMI	GCAATG	2 cut(s)	235, 932
BseMII	CTCAG	3 cut(s)	135, 494, 966
BseNI	ACTGG	2 cut(s)	220, 243
BseXI	GCAGC	7 cut(s)	35, 337, 386, 399, 421, 471, 676
BseYI	CCCAGC	2 cut(s)	405, 865
Bsh1236I	CGCG	1 cut(s)	974
BshFI	GGCC	3 cut(s)	170, 242, 810
BshVI	ATCGAT	1 cut(s)	476
BsiSI	CCGG	5 cut(s)	98, 287, 357, 510, 686
BslFI	GGGAC	2 cut(s)	206, 388
BslI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
BsmAI	GTCTC	2 cut(s)	111, 917
BsmFI	GGGAC	2 cut(s)	206, 388
BsnI	GGCC	3 cut(s)	170, 242, 810
Bsp143I	GATC	5 cut(s)	327, 477, 574, 648, 1044
BspACI	CCGC	4 cut(s)	284, 471, 780, 1017
BspANI	GGCC	3 cut(s)	170, 242, 810
BspCNI	CTCAG	3 cut(s)	134, 495, 965
BspDI	ATCGAT	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	974
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	334, 586, 640
BspTI	CTTAAG	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	235, 932
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	220, 243
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	447, 607, 751, 1051
BssMI	GATC	5 cut(s)	327, 477, 574, 648, 1044
BssNI	GRCGYC	1 cut(s)	747
BssT1I	CCWWGG	3 cut(s)	607, 751, 1051
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	451, 518
Bst6I	CTCTTC	1 cut(s)	889
BstACI	GRCGYC	1 cut(s)	747
BstAFI	CTTAAG	1 cut(s)	382
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	4 cut(s)	288, 444, 457, 784
BstDEI	CTNAG	3 cut(s)	121, 503, 952
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	6 cut(s)	353, 493, 588, 728, 1003, 1047
BstFNI	CGCG	1 cut(s)	974
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	5 cut(s)	330, 480, 577, 651, 1047
BstMAI	GTCTC	2 cut(s)	111, 917
BstMBI	GATC	5 cut(s)	327, 477, 574, 648, 1044
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 350, 452
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	2 cut(s)	641, 684
BstUI	CGCG	1 cut(s)	974
BstV1I	GCAGC	7 cut(s)	35, 337, 386, 399, 421, 471, 676
BstV2I	GAAGAC	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	170, 242, 810
BsuTUI	ATCGAT	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	6 cut(s)	353, 493, 588, 728, 1003, 1047
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	243, 252, 523
Cac8I	GCNNGC	4 cut(s)	288, 444, 457, 784
CaiI	CAGNNNCTG	1 cut(s)	412
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	476
CseI	GACGC	2 cut(s)	755, 988
Csp6I	GTAC	2 cut(s)	292, 430
CviAII	CATG	4 cut(s)	106, 389, 463, 713
CviQI	GTAC	2 cut(s)	292, 430
DdeI	CTNAG	3 cut(s)	121, 503, 952
DpnI	GATC	5 cut(s)	329, 479, 576, 650, 1046
DpnII	GATC	5 cut(s)	327, 477, 574, 648, 1044
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	889
EarI	CTCTTC	1 cut(s)	889
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	607, 751, 1051
Eco147I	AGGCCT	1 cut(s)	810
Eco57I	CTGAAG	2 cut(s)	330, 512
EcoRII	CCWGG	1 cut(s)	641
EcoT14I	CCWWGG	3 cut(s)	607, 751, 1051
EcoT22I	ATGCAT	1 cut(s)	1042
ErhI	CCWWGG	3 cut(s)	607, 751, 1051
FaeI	CATG	4 cut(s)	109, 392, 466, 716
FaiI	YATR	8 cut(s)	72, 107, 186, 198, 390, 464, 582, 714
FaqI	GGGAC	2 cut(s)	206, 388
FatI	CATG	4 cut(s)	105, 388, 462, 712
FbaI	TGATCA	1 cut(s)	1044
FblI	GTMKAC	1 cut(s)	564
FokI	GGATG	6 cut(s)	340, 500, 575, 735, 990, 1034
FspBI	CTAG	2 cut(s)	266, 732
GlaI	GCGC	1 cut(s)	22
GsaI	CCCAGC	2 cut(s)	409, 869
HaeIII	GGCC	3 cut(s)	170, 242, 810
HapII	CCGG	5 cut(s)	98, 287, 357, 510, 686
HgaI	GACGC	2 cut(s)	755, 988
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	4 cut(s)	109, 392, 466, 716
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	3 cut(s)	84, 544, 556
HindII	GTYRAC	3 cut(s)	84, 544, 556
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	6 cut(s)	80, 119, 735, 879, 915, 976
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	5 cut(s)	98, 287, 357, 510, 686
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	6 cut(s)	84, 202, 273, 544, 556, 565
Hpy188I	TCNGA	4 cut(s)	327, 332, 531, 745
Hpy188III	TCNNGA	3 cut(s)	16, 106, 572
Hpy8I	GTNNAC	6 cut(s)	84, 202, 273, 544, 556, 565
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	2 cut(s)	183, 332
HpyCH4III	ACNGT	2 cut(s)	451, 518
HpyCH4IV	ACGT	3 cut(s)	540, 929, 984
HpyCH4V	TGCA	8 cut(s)	74, 228, 353, 392, 415, 692, 942, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 350, 452
HpyF3I	CTNAG	3 cut(s)	121, 503, 952
HpySE526I	ACGT	3 cut(s)	540, 929, 984
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	4 cut(s)	109, 392, 466, 716
HspAI	GCGC	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	1044
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	327, 477, 574, 648, 1044
LmnI	GCTCC	2 cut(s)	332, 638
Lsp1109I	GCAGC	7 cut(s)	35, 337, 386, 399, 421, 471, 676
LweI	GCATC	7 cut(s)	317, 362, 478, 482, 713, 1027, 1065
MaeI	CTAG	2 cut(s)	266, 732
MaeII	ACGT	3 cut(s)	540, 929, 984
MaeIII	GTNAC	3 cut(s)	359, 518, 655
MalI	GATC	5 cut(s)	329, 479, 576, 650, 1046
MboI	GATC	5 cut(s)	327, 477, 574, 648, 1044
MboII	GAAGA	7 cut(s)	328, 518, 595, 658, 778, 817, 906
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	3 cut(s)	67, 532, 871
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	3 cut(s)	89, 113, 970
MmeI	TCCRAC	2 cut(s)	768, 937
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	1042
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	964
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	5 cut(s)	383, 555, 759, 813, 858
MslI	CAYNNNNRTG	1 cut(s)	937
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	350, 412
MspCI	CTTAAG	1 cut(s)	382
MspI	CCGG	5 cut(s)	98, 287, 357, 510, 686
MspR9I	CCNGG	2 cut(s)	643, 686
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	974
MwoI	GCNNNNNNNGC	3 cut(s)	341, 350, 452
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	5 cut(s)	327, 477, 574, 648, 1044
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	109, 392, 466, 716
NlaIV	GGNNCC	3 cut(s)	334, 586, 640
NmuCI	GTSAC	2 cut(s)	518, 655
NsiI	ATGCAT	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	2 cut(s)	825, 882
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	3 cut(s)	735, 879, 915
PflFI	GACNNNGTC	1 cut(s)	928
PleI	GAGTC	3 cut(s)	88, 113, 970
PpsI	GAGTC	3 cut(s)	88, 113, 970
Ppu21I	YACGTR	1 cut(s)	985
Psp6I	CCWGG	1 cut(s)	641
PspFI	CCCAGC	2 cut(s)	405, 865
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	3 cut(s)	334, 586, 640
PstNI	CAGNNNCTG	1 cut(s)	412
PsyI	GACNNNGTC	1 cut(s)	928
PvuII	CAGCTG	2 cut(s)	350, 412
RsaI	GTAC	2 cut(s)	293, 431
RsaNI	GTAC	2 cut(s)	292, 430
RseI	CAYNNNNRTG	1 cut(s)	937
SaqAI	TTAA	5 cut(s)	383, 555, 759, 813, 858
Sau3AI	GATC	5 cut(s)	327, 477, 574, 648, 1044
SchI	GAGTC	3 cut(s)	89, 113, 970
ScrFI	CCNGG	2 cut(s)	643, 686
SfaNI	GCATC	7 cut(s)	317, 362, 478, 482, 713, 1027, 1065
SgrAI	CRCCGGYG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	3 cut(s)	16, 382, 1011
SmoI	CTYRAG	3 cut(s)	16, 382, 1011
Sse9I	AATT	3 cut(s)	67, 532, 871
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	4 cut(s)	284, 471, 780, 1017
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	2 cut(s)	266, 732
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	641, 684
StyI	CCWWGG	3 cut(s)	607, 751, 1051
TaaI	ACNGT	2 cut(s)	451, 518
TaiI	ACGT	3 cut(s)	543, 932, 987
TaqI	TCGA	2 cut(s)	476, 828
TasI	AATT	3 cut(s)	67, 532, 871
TauI	GCSGC	3 cut(s)	473, 782, 1019
TfiI	GAWTC	3 cut(s)	735, 879, 915
Tru1I	TTAA	5 cut(s)	383, 555, 759, 813, 858
Tru9I	TTAA	5 cut(s)	383, 555, 759, 813, 858
TscAI	CASTG	3 cut(s)	250, 259, 523
TseFI	GTSAC	2 cut(s)	518, 655
TseI	GCWGC	7 cut(s)	23, 350, 374, 409, 412, 459, 689
Tsp45I	GTSAC	2 cut(s)	518, 655
TspDTI	ATGAA	2 cut(s)	479, 604
TspGWI	ACGGA	2 cut(s)	635, 891
TspRI	CASTG	3 cut(s)	250, 259, 523
Tth111I	GACNNNGTC	1 cut(s)	928
Vha464I	CTTAAG	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	2 cut(s)	266, 732
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.