Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005507.1

Orthogroup ID

OG0005825

Physical Location & Seq

Genomic Coordinates Forward (+)

211079 .. 213659

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005507.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgagagcagctttgtttatggtttttgtatttgcctttgtaattattggtggcaatgcacaagaatcaacctctcttgttccagccatcttcacatttggtgattctgcagtagatgtgggaaacaatgactacctcccaacaattttcaaggccaattaccctccttatggaagagactttaagaaccatcaagctactgggaggttttgcaatggaaaactagccactgatatcactgctgatactctgggcttcacaacttatccacctgcatatcttagccctcaggcatcagggaagaaccttctcattggagccaactttgcttctgctgcatccggttatgatgaaaaggcagcatacttgaatcatgcaatcaccttgccccaacagttacagtacttcaaggaataccagggtaagctaaacaagattgcaggtagtaagaaagcagcaacaattatcaagggtgcactatacttattgagcgctggcagtagtgactttgttcagaactactatgtcaatccttttcttaacaaactctacactcctgaccagtatggtgacatcctcgttggtgctttcacaagctttattacgggtgtgtatggtttgggagcaaggaaaataggtgtgacatcactccctccattgggttgccttccggctgcaagaaccttatttggattccatgagccaggctgtgtcgccagactcaacactgatgctcaagcattcaataagaagataaacaacgcagcaaacactctccaaaagaaacttcctggtcttacagtggtcatcttcgacatctacaagcctctgtttgatgttgttaagtctccatcaaactatggctttgcggaagcaaggagaggttgctgtggcactgggattgtagagacgacatcattgctgtgcaatccaaagtcaataggaacttgtgctaatgcaactcagtatgtgttctgggacagcgttcatccatctgaagctgctaatcaagttcttgctgatgcattgttagtccaaggtatcggcctcatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

352

Amino Acids

37.75

Weight (kDa)

8.81

Isoelectric Point (pI)

20.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16370
fragaria_vesca	FvH4_6g32640
malus_domestica	MD09G1199700.v1.1 MD17G1180300.v1.1
prunus_persica	Prupe.3G056200_v2.0.a1 Prupe.3G056200_v2.0.a1
pyrus_communis	pycom09g11690 pycom17g18960
rosa_chinensis	RchiOBHm_Chr2g0141141 RchiOBHm_Chr2g0141171
rosa_laevigata	RLG00000019916 RLG00000019917
rosa_multiflora	Rmu_sc0005507.1_g000049 Rmu_sc0006556.1_g000002 Rmu_sc0006556.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104160 Rroxscaffold_2G00104180
rosa_rugosa	Rorug02G0367500 Rorug02G0367500
rosa_samantha	Rh2AG418400 Rh2AG418500 Rh2BG428300 Rh2CG404800 Rh2CG404900
rosa_wichuraiana	Rw0G019760 Rw0G019770 Rw2G034310 Rw2G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	2 cut(s)	280, 431
AciI	CCGC	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	1017
AfaI	GTAC	1 cut(s)	404
AfeI	AGCGCT	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
AgsI	TTSAA	4 cut(s)	151, 370, 409, 745
AjnI	CCWGG	3 cut(s)	417, 703, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	5 cut(s)	11, 197, 427, 597, 1001
AluI	AGCT	5 cut(s)	11, 197, 427, 597, 1001
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	3 cut(s)	171, 852, 902
Alw44I	GTGCAC	1 cut(s)	474
Aor51HI	AGCGCT	1 cut(s)	493
AoxI	GGCC	2 cut(s)	153, 1045
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	7 cut(s)	8, 335, 359, 455, 674, 764, 1001
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	3 cut(s)	113, 373, 581
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
BccI	CCATC	4 cut(s)	95, 198, 859, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	901, 935
BciT130I	CCWGG	3 cut(s)	419, 705, 792
BcoDI	GTCTC	3 cut(s)	171, 852, 902
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	495
BfuAI	ACCTGC	2 cut(s)	280, 431
BisI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
BlsI	GCNGC	7 cut(s)	10, 337, 361, 457, 676, 766, 1003
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	419, 705, 792
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	419, 705, 792
BmrI	ACTGGG	2 cut(s)	210, 906
BmsI	GCATC	4 cut(s)	302, 347, 721, 1012
BmuI	ACTGGG	2 cut(s)	210, 906
BpuEI	CTTGAG	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	418, 1036
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 658, 659
Bse1I	ACTGG	3 cut(s)	205, 562, 901
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	3 cut(s)	61, 220, 917
BseBI	CCWGG	3 cut(s)	419, 705, 792
BseDI	CCNNGG	2 cut(s)	418, 1036
BseGI	GGATG	3 cut(s)	338, 573, 988
BseLI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
BseMI	GCAATG	3 cut(s)	61, 220, 917
BseMII	CTCAG	2 cut(s)	302, 977
BseNI	ACTGG	3 cut(s)	205, 562, 901
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
BshFI	GGCC	2 cut(s)	155, 1047
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	342, 671
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
BsmAI	GTCTC	3 cut(s)	171, 852, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	155, 1047
Bsp1286I	GDGCHC	1 cut(s)	478
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	2 cut(s)	155, 1047
BspCNI	CTCAG	2 cut(s)	301, 976
BspHI	TCATGA	1 cut(s)	1055
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	280, 431
BsrDI	GCAATG	3 cut(s)	61, 220, 917
BsrI	ACTGG	3 cut(s)	205, 562, 901
BssECI	CCNNGG	2 cut(s)	418, 1036
BssT1I	CCWWGG	1 cut(s)	1036
Bst2UI	CCWGG	3 cut(s)	419, 705, 792
Bst4CI	ACNGT	3 cut(s)	396, 402, 802
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	281, 288, 963
BstF5I	GGATG	3 cut(s)	338, 573, 988
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstMAI	GTCTC	3 cut(s)	171, 852, 902
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNI	CCWGG	3 cut(s)	419, 705, 792
BstSCI	CCNGG	3 cut(s)	417, 703, 790
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	155, 1047
BtsCI	GGATG	3 cut(s)	338, 573, 988
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	5 cut(s)	228, 237, 726, 807, 894
BveI	ACCTGC	2 cut(s)	280, 431
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	1055
CfoI	GCGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	3 cut(s)	374, 698, 1056
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	281, 288, 963
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	1036
Eco32I	GATATC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	1017
Eco81I	CCTNAGG	1 cut(s)	288
EcoRII	CCWGG	3 cut(s)	417, 703, 790
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	1036
EcoT22I	ATGCAT	1 cut(s)	1027
ErhI	CCWWGG	1 cut(s)	1036
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	3 cut(s)	377, 701, 1059
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	3 cut(s)	373, 697, 1055
Fnu4HI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
FokI	GGATG	3 cut(s)	325, 560, 975
Fsp4HI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	155, 1047
HapII	CCGG	2 cut(s)	342, 671
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	377, 701, 1059
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	5 cut(s)	65, 104, 370, 693, 720
HpaII	CCGG	2 cut(s)	342, 671
HphI	GGTGA	3 cut(s)	113, 373, 581
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	516, 997
Hpy188III	TCNNGA	2 cut(s)	557, 1056
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	317, 677
HpyCH4III	ACNGT	3 cut(s)	396, 402, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	3 cut(s)	281, 288, 963
Hsp92II	CATG	3 cut(s)	377, 701, 1059
HspAI	GCGC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	317, 623
Lsp1109I	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
LweI	GCATC	4 cut(s)	302, 347, 721, 1012
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	4 cut(s)	396, 503, 569, 640
MboII	GAAGA	5 cut(s)	82, 186, 313, 763, 802
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	4 cut(s)	42, 144, 157, 462
MlyI	GAGTC	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	1027
MseI	TTAA	3 cut(s)	183, 540, 843
MslI	CAYNNNNRTG	1 cut(s)	922
MspI	CCGG	2 cut(s)	342, 671
MspR9I	CCNGG	3 cut(s)	419, 705, 792
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	3 cut(s)	419, 705, 792
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NlaIII	CATG	3 cut(s)	377, 701, 1059
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	3 cut(s)	503, 569, 640
NsiI	ATGCAT	1 cut(s)	1027
PagI	TCATGA	1 cut(s)	1055
PaqCI	CACCTGC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	4 cut(s)	65, 104, 370, 693
PkrI	GCNGC	7 cut(s)	10, 337, 361, 457, 676, 766, 1003
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	417, 703, 790
PspGI	CCWGG	3 cut(s)	417, 703, 790
PspN4I	GGNNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	922
SaqAI	TTAA	3 cut(s)	183, 540, 843
SatI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	3 cut(s)	419, 705, 792
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	302, 347, 721, 1012
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	922
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	4 cut(s)	42, 144, 157, 462
SsiI	CCGC	1 cut(s)	869
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	417, 703, 790
StyI	CCWWGG	1 cut(s)	1036
TaaI	ACNGT	3 cut(s)	396, 402, 802
TaqI	TCGA	1 cut(s)	813
TasI	AATT	4 cut(s)	42, 144, 157, 462
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	4 cut(s)	65, 104, 370, 693
Tru1I	TTAA	3 cut(s)	183, 540, 843
Tru9I	TTAA	3 cut(s)	183, 540, 843
TscAI	CASTG	5 cut(s)	235, 244, 733, 807, 901
TseFI	GTSAC	3 cut(s)	503, 569, 640
TseI	GCWGC	7 cut(s)	8, 335, 359, 455, 674, 764, 1001
Tsp45I	GTSAC	3 cut(s)	503, 569, 640
TspDTI	ATGAA	3 cut(s)	366, 977, 1044
TspRI	CASTG	5 cut(s)	235, 244, 733, 807, 901
VneI	GTGCAC	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.