Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006556.1

Orthogroup ID

OG0005825

Physical Location & Seq

Genomic Coordinates Forward (+)

14638 .. 17304

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006556.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgagagcagctttgtttatggtttttgtatttgcctttgtaattattggtggcaatgcacaagaatcaaccactcttgttccagccatcttcacatttggtgattctgcagtagatgtgggaaacaatgactacctcccaacaattttcaaggccaattaccctccttatggaagagactttaagaaccatcaagctactgggaggttttgcaatggaaaactagccactgatatcactgctgatactctgggcttcacaacttatccacctgcatatcttagccctcaggcatcagggaagaaccttctcattggagccaactttgcttccgctgcatccggttatgatcaaacggcagcaaacttcaatcgtgcaatctctttgccccgacagttacgatactttaaggaataccagggtaagctgaacaaggttgcaggtagtgagaaagcagcaacaattatcgagggtgccctatacttattgagtgctggcagtagtgattttgttcagaactactatgtcaatccttttgttaacaaattctacactcctgacaagtacggtgacatcctcgttggtgctttcacacgctttattacggatgtgtatggtttgggagcaaggaaaataggtgtgacatcactccctccattgggttgccttccagctgcaagaaccttatttggaccccatgagccaggctgtgtcgccagactcaacactgatgctcaagcattcaataagaagataaacaacgcagcagaaactctccaaaagaaacttcctggtcttacactggtcatcttcgacatctacaagcctctatttgatgttgttgagtctccatcaaactatggctttgcggaagcaaggagaggttgctgtggcacggggattatagagacgacatcattgctgtgcaattcaaagtcaataggaacttgtgctaatgcaactcaatatgtgttctgggacagcgttcatccatctgaagctgctaatcaatttcttgctgatgcattgattgtccaaggggttcccctcatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

352

Amino Acids

37.98

Weight (kDa)

8.36

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16370
fragaria_vesca	FvH4_6g32640
malus_domestica	MD09G1199700.v1.1 MD17G1180300.v1.1
prunus_persica	Prupe.3G056200_v2.0.a1 Prupe.3G056200_v2.0.a1
pyrus_communis	pycom09g11690 pycom17g18960
rosa_chinensis	RchiOBHm_Chr2g0141141 RchiOBHm_Chr2g0141171
rosa_laevigata	RLG00000019916 RLG00000019917
rosa_multiflora	Rmu_sc0005507.1_g000049 Rmu_sc0006556.1_g000002 Rmu_sc0006556.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104160 Rroxscaffold_2G00104180
rosa_rugosa	Rorug02G0367500 Rorug02G0367500
rosa_samantha	Rh2AG418400 Rh2AG418500 Rh2BG428300 Rh2CG404800 Rh2CG404900
rosa_wichuraiana	Rw0G019760 Rw0G019770 Rw2G034310 Rw2G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	2 cut(s)	280, 431
AccB1I	GGYRCC	1 cut(s)	473
AciI	CCGC	2 cut(s)	333, 869
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	1017
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
AgsI	TTSAA	4 cut(s)	151, 370, 745, 933
AjnI	CCWGG	3 cut(s)	417, 703, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	5 cut(s)	11, 197, 427, 674, 1001
AluI	AGCT	5 cut(s)	11, 197, 427, 674, 1001
Alw26I	GTCTC	3 cut(s)	171, 852, 902
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	7 cut(s)	8, 335, 359, 455, 674, 764, 1001
ApoI	RAATTY	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	113, 581
AvaII	GGWCC	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	473
BbvI	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
BccI	CCATC	4 cut(s)	95, 198, 859, 1000
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	901, 935
BciT130I	CCWGG	3 cut(s)	419, 705, 792
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	171, 852, 902
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	2 cut(s)	280, 431
BisI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
BlsI	GCNGC	7 cut(s)	10, 337, 361, 457, 676, 766, 1003
Bme1390I	CCNGG	3 cut(s)	419, 705, 792
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	4 cut(s)	319, 475, 694, 1044
BmrFI	CCNGG	3 cut(s)	419, 705, 792
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	4 cut(s)	302, 347, 721, 1012
BmuI	ACTGGG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	418, 1036
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 658, 659
Bse1I	ACTGG	2 cut(s)	205, 807
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	3 cut(s)	61, 220, 917
BseBI	CCWGG	3 cut(s)	419, 705, 792
BseDI	CCNNGG	2 cut(s)	418, 1036
BseGI	GGATG	4 cut(s)	338, 573, 613, 988
BseLI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
BseMI	GCAATG	3 cut(s)	61, 220, 917
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	205, 807
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	3 cut(s)	170, 658, 659
BsmAI	GTCTC	3 cut(s)	171, 852, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	2 cut(s)	333, 869
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	1055
BspLI	GGNNCC	4 cut(s)	319, 475, 694, 1044
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	280, 431
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	3 cut(s)	61, 220, 917
BsrI	ACTGG	2 cut(s)	205, 807
BssECI	CCNNGG	2 cut(s)	418, 1036
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	1036
Bst2UI	CCWGG	3 cut(s)	419, 705, 792
Bst4CI	ACNGT	2 cut(s)	396, 569
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	281, 288
BstF5I	GGATG	4 cut(s)	338, 573, 613, 988
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	3 cut(s)	171, 852, 902
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNI	CCWGG	3 cut(s)	419, 705, 792
BstSCI	CCNGG	3 cut(s)	417, 703, 790
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	338, 573, 613, 988
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	228, 237, 726, 800
BveI	ACCTGC	2 cut(s)	280, 431
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	1055
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	698, 1056
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	281, 288
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	1036
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	1017
Eco81I	CCTNAGG	1 cut(s)	288
EcoRII	CCWGG	3 cut(s)	417, 703, 790
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	1036
EcoT22I	ATGCAT	1 cut(s)	1027
ErhI	CCWWGG	1 cut(s)	1036
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	2 cut(s)	701, 1059
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	2 cut(s)	697, 1055
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
FokI	GGATG	4 cut(s)	325, 560, 620, 975
Fsp4HI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	2 cut(s)	701, 1059
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	4 cut(s)	65, 104, 720, 845
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	113, 581
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	516, 997
Hpy188III	TCNNGA	2 cut(s)	557, 1056
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	317, 677
HpyCH4III	ACNGT	2 cut(s)	396, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	2 cut(s)	281, 288
Hsp92II	CATG	2 cut(s)	701, 1059
Ksp22I	TGATCA	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	317, 623
Lsp1109I	GCAGC	7 cut(s)	20, 322, 371, 467, 661, 776, 988
LweI	GCATC	4 cut(s)	302, 347, 721, 1012
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	396, 569, 640
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	5 cut(s)	82, 186, 313, 763, 802
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	7 cut(s)	42, 144, 157, 462, 545, 928, 1010
MlyI	GAGTC	2 cut(s)	714, 854
Mph1103I	ATGCAT	1 cut(s)	1027
MseI	TTAA	3 cut(s)	183, 408, 540
MslI	CAYNNNNRTG	1 cut(s)	922
MspA1I	CMGCKG	2 cut(s)	335, 674
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	3 cut(s)	419, 705, 792
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	3 cut(s)	419, 705, 792
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	701, 1059
NlaIV	GGNNCC	4 cut(s)	319, 475, 694, 1044
NmuCI	GTSAC	2 cut(s)	569, 640
NsiI	ATGCAT	1 cut(s)	1027
PagI	TCATGA	1 cut(s)	1055
PaqCI	CACCTGC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	65, 104
PkrI	GCNGC	7 cut(s)	10, 337, 361, 457, 676, 766, 1003
PleI	GAGTC	2 cut(s)	714, 853
PpsI	GAGTC	2 cut(s)	714, 853
Psp6I	CCWGG	3 cut(s)	417, 703, 790
PspGI	CCWGG	3 cut(s)	417, 703, 790
PspN4I	GGNNCC	4 cut(s)	319, 475, 694, 1044
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	922
SaqAI	TTAA	3 cut(s)	183, 408, 540
SatI	GCNGC	7 cut(s)	9, 336, 360, 456, 675, 765, 1002
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	2 cut(s)	714, 854
ScrFI	CCNGG	3 cut(s)	419, 705, 792
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	302, 347, 721, 1012
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	922
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	7 cut(s)	42, 144, 157, 462, 545, 928, 1010
SsiI	CCGC	2 cut(s)	333, 869
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	417, 703, 790
StyI	CCWWGG	1 cut(s)	1036
TaaI	ACNGT	2 cut(s)	396, 569
TaqI	TCGA	2 cut(s)	468, 813
TasI	AATT	7 cut(s)	42, 144, 157, 462, 545, 928, 1010
TfiI	GAWTC	2 cut(s)	65, 104
Tru1I	TTAA	3 cut(s)	183, 408, 540
Tru9I	TTAA	3 cut(s)	183, 408, 540
TscAI	CASTG	4 cut(s)	235, 244, 733, 807
TseFI	GTSAC	2 cut(s)	569, 640
TseI	GCWGC	7 cut(s)	8, 335, 359, 455, 674, 764, 1001
Tsp45I	GTSAC	2 cut(s)	569, 640
TspDTI	ATGAA	2 cut(s)	977, 1044
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	4 cut(s)	235, 244, 733, 807
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.