Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006556.1

Orthogroup ID

OG0005825

Physical Location & Seq

Genomic Coordinates Forward (+)

39112 .. 41570

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006556.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgggtagccaaaccatcagagcagctttggttctggtttttgtatttgcctttgcaattattggtggcaatgcacaagaatcaaccactcttgttccagccatcatcacatttggtgattctgcagtagatgtgggaaacaatgactacctcctaacaatttataaggccaattaccctccttatggaagagactttgtgaaccatcaagctactgggaggttttgcaatggaaaactagccaccgatatcactgctgatactctgggcttcacaacttatccacctgcatatcttagccctcaggcgtcagggaataaccttctcattggagccaactttgcttccgctgcatccggttatgatcaaacggcagcaaacttcaatcgtgcaatctctttgccccgacagttacgatactttaaggaataccagggtaagctgaacaaggttgcaggtagtgagaaagcagcaacaattatcgagggtgccctatacttattgagtgctggcagtagtgattttgttcagaactactatgtcaatccttttgttaacaaattctacactcctgacaagtacggtgacatcctcgttggtgctttcacacgctttattacggatgtgtatggtttgggagcaaggaaaataggtgtgacatcactccctccattgggttgccttccagctgcaagaaccttatttggaccccatgagccaggctgtgtcgccagactcaacactgatgctcaagcattcaataagaagataaacaacgcagcagaaactctccaaaagaaacttcctggtcttacactggtcatcttcgacatctacaagcctctatttgatgttgttgagtctccatcaaactatggctttgcggaagcaaggagaggttgctgtggcacggggattatagagacgacatcattgctgtgcaattcaaagtcaataggaacttgtgctaatgcaactcaatatgtgttctgggacagcgttcatccatctgaagctgctaatcaatttcttgctgatgcattgattgtccaaggggttcccctcatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

357

Amino Acids

38.32

Weight (kDa)

7.52

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16370
fragaria_vesca	FvH4_6g32640
malus_domestica	MD09G1199700.v1.1 MD17G1180300.v1.1
prunus_persica	Prupe.3G056200_v2.0.a1 Prupe.3G056200_v2.0.a1
pyrus_communis	pycom09g11690 pycom17g18960
rosa_chinensis	RchiOBHm_Chr2g0141141 RchiOBHm_Chr2g0141171
rosa_laevigata	RLG00000019916 RLG00000019917
rosa_multiflora	Rmu_sc0005507.1_g000049 Rmu_sc0006556.1_g000002 Rmu_sc0006556.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104160 Rroxscaffold_2G00104180
rosa_rugosa	Rorug02G0367500 Rorug02G0367500
rosa_samantha	Rh2AG418400 Rh2AG418500 Rh2BG428300 Rh2CG404800 Rh2CG404900
rosa_wichuraiana	Rw0G019760 Rw0G019770 Rw2G034310 Rw2G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	2 cut(s)	295, 446
AccB1I	GGYRCC	1 cut(s)	488
AciI	CCGC	2 cut(s)	348, 884
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	1032
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
AgsI	TTSAA	3 cut(s)	385, 760, 948
AjnI	CCWGG	3 cut(s)	432, 718, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AluBI	AGCT	5 cut(s)	26, 212, 442, 689, 1016
AluI	AGCT	5 cut(s)	26, 212, 442, 689, 1016
Alw26I	GTCTC	3 cut(s)	186, 867, 917
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	7 cut(s)	23, 350, 374, 470, 689, 779, 1016
ApoI	RAATTY	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	128, 596
AvaII	GGWCC	1 cut(s)	707
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	488
BbvI	GCAGC	7 cut(s)	35, 337, 386, 482, 676, 791, 1003
BccI	CCATC	5 cut(s)	23, 110, 213, 874, 1015
BceAI	ACGGC	1 cut(s)	387
BcgI	CGANNNNNNTGC	4 cut(s)	236, 270, 916, 950
BciT130I	CCWGG	3 cut(s)	434, 720, 807
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	186, 867, 917
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	2 cut(s)	295, 446
BisI	GCNGC	7 cut(s)	24, 351, 375, 471, 690, 780, 1017
BlsI	GCNGC	7 cut(s)	25, 352, 376, 472, 691, 781, 1018
Bme1390I	CCNGG	3 cut(s)	434, 720, 807
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	4 cut(s)	334, 490, 709, 1059
BmrFI	CCNGG	3 cut(s)	434, 720, 807
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	362, 736, 1027
BmuI	ACTGGG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	433, 1051
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 673, 674
Bse1I	ACTGG	2 cut(s)	220, 822
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	76, 235, 932
BseBI	CCWGG	3 cut(s)	434, 720, 807
BseDI	CCNNGG	2 cut(s)	433, 1051
BseGI	GGATG	4 cut(s)	353, 588, 628, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
BseMI	GCAATG	3 cut(s)	76, 235, 932
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	220, 822
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	7 cut(s)	35, 337, 386, 482, 676, 791, 1003
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	1007
BslI	CCNNNNNNNGG	3 cut(s)	185, 673, 674
BsmAI	GTCTC	3 cut(s)	186, 867, 917
BsmBI	CGTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	1007
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	2 cut(s)	348, 884
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	1070
BspLI	GGNNCC	4 cut(s)	334, 490, 709, 1059
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	2 cut(s)	295, 446
BspT107I	GGYRCC	1 cut(s)	488
BsrDI	GCAATG	3 cut(s)	76, 235, 932
BsrI	ACTGG	2 cut(s)	220, 822
BssECI	CCNNGG	2 cut(s)	433, 1051
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	1051
Bst2UI	CCWGG	3 cut(s)	434, 720, 807
Bst4CI	ACNGT	2 cut(s)	411, 584
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	2 cut(s)	296, 303
BstF5I	GGATG	4 cut(s)	353, 588, 628, 1003
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	3 cut(s)	186, 867, 917
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 350
BstNI	CCWGG	3 cut(s)	434, 720, 807
BstSCI	CCNGG	3 cut(s)	432, 718, 805
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	7 cut(s)	35, 337, 386, 482, 676, 791, 1003
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	353, 588, 628, 1003
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	252, 741, 815
BveI	ACCTGC	2 cut(s)	295, 446
Cac8I	GCNNGC	1 cut(s)	511
CciI	TCATGA	1 cut(s)	1070
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	2 cut(s)	713, 1071
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	296, 303
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	1051
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	1032
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	432, 718, 805
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	1051
EcoT22I	ATGCAT	1 cut(s)	1042
ErhI	CCWWGG	1 cut(s)	1051
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	2 cut(s)	716, 1074
FaqI	GGGAC	1 cut(s)	1007
FatI	CATG	2 cut(s)	712, 1070
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	7 cut(s)	24, 351, 375, 471, 690, 780, 1017
FokI	GGATG	4 cut(s)	340, 575, 635, 990
Fsp4HI	GCNGC	7 cut(s)	24, 351, 375, 471, 690, 780, 1017
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	7 cut(s)	24, 351, 375, 471, 690, 780, 1017
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	357
HgaI	GACGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	716, 1074
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	4 cut(s)	80, 119, 735, 860
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	128, 596
Hpy166II	GTNNAC	2 cut(s)	202, 556
Hpy188I	TCNGA	3 cut(s)	20, 531, 1012
Hpy188III	TCNNGA	2 cut(s)	572, 1071
Hpy8I	GTNNAC	2 cut(s)	202, 556
HpyAV	CCTTC	2 cut(s)	332, 692
HpyCH4III	ACNGT	2 cut(s)	411, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 350
HpyF3I	CTNAG	2 cut(s)	296, 303
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	716, 1074
Ksp22I	TGATCA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	332, 638
Lsp1109I	GCAGC	7 cut(s)	35, 337, 386, 482, 676, 791, 1003
LweI	GCATC	3 cut(s)	362, 736, 1027
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	3 cut(s)	411, 584, 655
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	201, 778, 817
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	7 cut(s)	57, 159, 172, 477, 560, 943, 1025
MlyI	GAGTC	2 cut(s)	729, 869
Mph1103I	ATGCAT	1 cut(s)	1042
MseI	TTAA	2 cut(s)	423, 555
MslI	CAYNNNNRTG	1 cut(s)	937
MspA1I	CMGCKG	2 cut(s)	350, 689
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	3 cut(s)	434, 720, 807
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	3 cut(s)	434, 720, 807
MwoI	GCNNNNNNNGC	2 cut(s)	341, 350
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	716, 1074
NlaIV	GGNNCC	4 cut(s)	334, 490, 709, 1059
NmuCI	GTSAC	2 cut(s)	584, 655
NsiI	ATGCAT	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	1070
PaqCI	CACCTGC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	755
PfeI	GAWTC	2 cut(s)	80, 119
PkrI	GCNGC	7 cut(s)	25, 352, 376, 472, 691, 781, 1018
PleI	GAGTC	2 cut(s)	729, 868
PpsI	GAGTC	2 cut(s)	729, 868
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	432, 718, 805
PspGI	CCWGG	3 cut(s)	432, 718, 805
PspN4I	GGNNCC	4 cut(s)	334, 490, 709, 1059
PspPI	GGNCC	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	937
SaqAI	TTAA	2 cut(s)	423, 555
SatI	GCNGC	7 cut(s)	24, 351, 375, 471, 690, 780, 1017
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	729, 869
ScrFI	CCNGG	3 cut(s)	434, 720, 807
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	3 cut(s)	362, 736, 1027
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	7 cut(s)	57, 159, 172, 477, 560, 943, 1025
SsiI	CCGC	2 cut(s)	348, 884
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	432, 718, 805
StyI	CCWWGG	1 cut(s)	1051
TaaI	ACNGT	2 cut(s)	411, 584
TaqI	TCGA	2 cut(s)	483, 828
TasI	AATT	7 cut(s)	57, 159, 172, 477, 560, 943, 1025
TfiI	GAWTC	2 cut(s)	80, 119
Tru1I	TTAA	2 cut(s)	423, 555
Tru9I	TTAA	2 cut(s)	423, 555
TscAI	CASTG	3 cut(s)	259, 748, 822
TseFI	GTSAC	2 cut(s)	584, 655
TseI	GCWGC	7 cut(s)	23, 350, 374, 470, 689, 779, 1016
Tsp45I	GTSAC	2 cut(s)	584, 655
TspDTI	ATGAA	2 cut(s)	992, 1059
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	3 cut(s)	259, 748, 822
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.