Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006867

Physical Location & Seq

Genomic Coordinates Reverse (-)

17773378 .. 17774035

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATATTGAGTACTGAAGAGCATGTGCAACTGATGGAAAATGTTACTGCTAAATGTGCTGCCCAAACTTCTCTTATTCCACCAGTTCCTAGTAGTTCTTCACCAGAAAGTGGAGCTGGTAGTTTACAAGTAGGAGGAATAGATGCAGATGCAATTTTTCACCGGAATATAAAACAATCAAGTGAGGATCCTGCATTAGTTATATACACTAGTGGCACAACAGGAAAGCCGAAAGGAGTTGTTCACACACACAAAAGCATCAGTGTACAAGTATGCACTTTATCTATCCTTGCAAGCAAAGATTTAGCTATATTTCGTTTCACCAATAGAATGGTTGTCTGGTTAGGTGTCCAAACCTTGGCAGAAGCTTGGGGGTATACATCTGCTGATCAATTTCTGAATTGTCTACCTCTACATCATATCCTTCAATTTTTATGTATTCGCTTGCAAAATTGTAAAGCTTTCAAATGCAGTCTCAGCTTACTTTTAGCTGATGTCTTCAGTGTCTTCTATTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016053 GO:0016054 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0071704 GO:0072330 GO:0090409 GO:0090410 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00280 map00280

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

174

Amino Acids

18.83

Weight (kDa)

6.98

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	55 - 146	8.6e-17	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16170
fragaria_vesca	FvH4_6g31860 FvH4_6g31860 FvH4_6g31860
malus_domestica	MD09G1208800.v1.1 MD17G1190300.v1.1
prunus_persica	Prupe.3G065200_v2.0.a1 Prupe.3G065200_v2.0.a1
pyrus_communis	pycom09g12490 pycom17g19780
rosa_chinensis	RchiOBHm_Chr2g0139171 RchiOBHm_Chr2g0139181
rosa_laevigata	RLG00000019793
rosa_multiflora	Rmu_sc0001803.1_g000009 Rmu_sc0012067.1_g000001 Rmu_sc0037230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105570
rosa_rugosa	Rorug02G0355400
rosa_samantha	Rh2AG405400 Rh2AG405500 Rh2BG415900 Rh2CG391500 Rh2CG391600 Rh2DG425200 Rh2DG425300
rosa_wichuraiana	Rw2G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	110, 358
AccI	GTMKAC	2 cut(s)	377, 406
AclWI	GGATC	2 cut(s)	182, 195
AcuI	CTGAAG	2 cut(s)	36, 484
AfaI	GTAC	2 cut(s)	13, 267
AfiI	CCNNNNNNNGG	2 cut(s)	110, 358
AgsI	TTSAA	2 cut(s)	428, 466
AhlI	ACTAGT	1 cut(s)	209
AluBI	AGCT	6 cut(s)	116, 308, 368, 461, 480, 491
AluI	AGCT	6 cut(s)	116, 308, 368, 461, 480, 491
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	182, 195
ApeKI	GCWGC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	93, 152, 313
BamHI	GGATCC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	490, 499
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	2 cut(s)	90, 210
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	3 cut(s)	133, 139, 267
BpiI	GAAGAC	2 cut(s)	490, 499
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 358
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	110, 358
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	110, 358
BsmAI	GTCTC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	187, 388
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	182, 195
BspQI	GCTCTTC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	187, 388
BssNAI	GTATAC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	295, 446
BstDEI	CTNAG	1 cut(s)	476
BstKTI	GATC	2 cut(s)	190, 391
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	2 cut(s)	187, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 477
BstNSI	RCATGY	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	490, 499
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	268, 508
Cac8I	GCNNGC	2 cut(s)	295, 446
Csp6I	GTAC	2 cut(s)	12, 266
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	7 cut(s)	116, 229, 308, 368, 461, 480, 491
CviKI_1	RGCY	7 cut(s)	116, 229, 308, 368, 461, 480, 491
CviQI	GTAC	2 cut(s)	12, 266
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	2 cut(s)	189, 390
DpnII	GATC	2 cut(s)	187, 388
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	36, 484
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	26
FaiI	YATR	9 cut(s)	24, 170, 203, 205, 274, 311, 378, 420, 436
FatI	CATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	2 cut(s)	377, 406
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	90, 210
GluI	GCNGC	1 cut(s)	60
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	1 cut(s)	26
HindIII	AAGCTT	2 cut(s)	366, 459
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	93, 152, 313
Hpy166II	GTNNAC	5 cut(s)	125, 244, 266, 378, 407
Hpy188I	TCNGA	1 cut(s)	399
Hpy8I	GTNNAC	5 cut(s)	125, 244, 266, 378, 407
HpyAV	CCTTC	1 cut(s)	434
HpyCH4V	TGCA	8 cut(s)	28, 146, 152, 194, 276, 293, 448, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 477
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	187, 388
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	96, 102, 117, 176, 204, 207, 325
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	133, 139, 267
MaeI	CTAG	2 cut(s)	90, 210
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	189, 390
MboI	GATC	2 cut(s)	187, 388
MboII	GAAGA	4 cut(s)	29, 90, 490, 499
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	5 cut(s)	153, 392, 400, 428, 451
MnlI	CCTC	3 cut(s)	128, 178, 420
MspI	CCGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	56, 477
NdeII	GATC	2 cut(s)	187, 388
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	12
PflMI	CCANNNNNTGG	2 cut(s)	110, 358
PkrI	GCNGC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	13, 267
RsaNI	GTAC	2 cut(s)	12, 266
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	187, 388
ScaI	AGTACT	1 cut(s)	13
SetI	ASST	9 cut(s)	118, 310, 349, 359, 370, 412, 463, 482, 493
SfaNI	GCATC	3 cut(s)	133, 139, 267
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	5 cut(s)	153, 392, 400, 428, 451
SspMI	CTAG	2 cut(s)	90, 210
StyI	CCWWGG	1 cut(s)	357
TasI	AATT	5 cut(s)	153, 392, 400, 428, 451
TatI	WGTACW	2 cut(s)	11, 265
TscAI	CASTG	2 cut(s)	268, 508
TseI	GCWGC	1 cut(s)	59
TspRI	CASTG	2 cut(s)	268, 508
Van91I	CCANNNNNTGG	2 cut(s)	110, 358
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	377, 406
XspI	CTAG	2 cut(s)	90, 210
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.