Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

17871709 .. 17872662

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCAAGTGGCCGAAACACGCACTGGTGTTACAATTGCAGGCAGCCAGTTCAGCTGAGAGGGCGAGATGCAGTTTGCCCAGGCTGCGATGGAGGATTTGTTCAAGAACTTGATGATATGGTTCATATCAGCCCAATGGATTTCTTTGGACTGGACAAGGATGATGATCCTGACAGGAGGTTTGGGATCATGGAAGCTTTCTCAGCGTTGCACCAATTGACAGACAGAAGGCCTAATGATAGCATTAGGGGAAGACCAGATTTAGTTCCAGAGCGTAACCCGGCGTTTGCTCCTCTATTGATTTTTGGTGGCCAAATTCCTTTTCGACTGTCTGGAAACGGTGCTTTTGAAGCTCTTTTCAATGGGTCGCCTGGAATTGGTGTGACACGGGGTAATGTTGGGGATTATTTTGTAGGTCCTGGCTTAGAAGAACTATTTGAGCAGCTTTCAGCTAATGACCGGCGAGGCCCTGCCCCAGCCTCCAGAGGTTCAATTGATGCAATGCCTTCTGTTAAGATCACAAATAGGCATCTCCGTTCTGATGCGCACTGTCCTGTTTGCAAGGACAAATTCGAGCTGGGATCTGAAGCAAAGCAAATGCCTTGTGACCATCTGTACCACACTGATTGTATCGTACCATGGCTAGTCCAACACAATTCATGCCCTGTTTGCCGCCAAGAACTGCCTCCACAAGGTCCGCAAGGAGCGGGAAGCAGTCGTAGCTCAAATAGTCGAAGTAGAAGCAGTAGTTTTGGTAGTAATACCAGTGCAAGGGAGAGTGGTAGAGAAAACCAAGGGAGGCGAAACCGTTTCTCATCTCTGTGGCCGTTTCGCTCATCTAGTTCCAGCTCTAGCTCAAGCACTAGTCATAACCCAACAACTGAAAGTAGCCCATCAACTATGCGGGAACATAATAACGAGATGGAGTATTCAGGATGGCCATTCGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

318

Amino Acids

35.03

Weight (kDa)

6.36

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	1.9e-10	zinc-ribbon
zf-rbx1	PF12678	181 - 225	2.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	183 - 225	1.6e-12	Ring finger domain
zf-C3HC4_2	PF13923	184 - 224	1.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	184 - 224	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	184 - 222	3.7e-06	RING-type zinc-finger
zf-RING_11	PF17123	184 - 211	9.1e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	707
AciI	CCGC	4 cut(s)	673, 698, 707, 904
AclWI	GGATC	3 cut(s)	161, 194, 589
AcoI	YGGCCR	4 cut(s)	10, 310, 824, 938
AcsI	RAATTY	2 cut(s)	315, 569
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	2 cut(s)	617, 636
AfiI	CCNNNNNNNGG	3 cut(s)	377, 692, 771
AgsI	TTSAA	4 cut(s)	104, 350, 361, 492
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	79, 370, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	9 cut(s)	55, 197, 353, 445, 452, 577, 723, 849, 855
AluI	AGCT	9 cut(s)	55, 197, 353, 445, 452, 577, 723, 849, 855
AlwI	GGATC	3 cut(s)	161, 194, 589
AoxI	GGCC	6 cut(s)	10, 230, 310, 466, 824, 938
ApeKI	GCWGC	3 cut(s)	43, 84, 442
ApoI	RAATTY	2 cut(s)	315, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	3 cut(s)	416, 467, 695
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	416, 695
BalI	TGGCCA	2 cut(s)	312, 940
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	55, 71, 454
BccI	CCATC	5 cut(s)	83, 618, 901, 916, 930
BceAI	ACGGC	1 cut(s)	811
BciT130I	CCWGG	3 cut(s)	81, 372, 420
BcnI	CCSGG	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	5 cut(s)	644, 840, 852, 864, 952
BisI	GCNGC	4 cut(s)	44, 85, 443, 673
BlsI	GCNGC	4 cut(s)	45, 86, 444, 674
Bme1390I	CCNGG	4 cut(s)	81, 281, 372, 420
Bme18I	GGWCC	2 cut(s)	416, 695
BmgT120I	GGNCC	3 cut(s)	416, 467, 695
BmrFI	CCNGG	4 cut(s)	81, 281, 372, 420
BmsI	GCATC	4 cut(s)	58, 487, 532, 538
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	79, 638, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 692, 771
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	4 cut(s)	29, 47, 156, 765
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	81, 372, 420
BseDI	CCNNGG	3 cut(s)	79, 638, 793
BseGI	GGATG	2 cut(s)	166, 941
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	377, 692, 771
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	47, 216
BseNI	ACTGG	4 cut(s)	29, 47, 156, 765
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	55, 71, 454
BseYI	CCCAGC	2 cut(s)	475, 577
BshFI	GGCC	6 cut(s)	12, 232, 312, 468, 826, 940
BsiSI	CCGG	2 cut(s)	281, 460
BslI	CCNNNNNNNGG	3 cut(s)	377, 692, 771
BsnI	GGCC	6 cut(s)	12, 232, 312, 468, 826, 940
Bsp143I	GATC	4 cut(s)	166, 186, 516, 581
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	4 cut(s)	673, 698, 707, 904
BspANI	GGCC	6 cut(s)	12, 232, 312, 468, 826, 940
BspCNI	CTCAG	2 cut(s)	48, 215
BspPI	GGATC	3 cut(s)	161, 194, 589
BsrBI	CCGCTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	459
BsrI	ACTGG	4 cut(s)	29, 47, 156, 765
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	3 cut(s)	79, 638, 793
BssMI	GATC	4 cut(s)	166, 186, 516, 581
BssT1I	CCWWGG	2 cut(s)	638, 793
Bst2UI	CCWGG	3 cut(s)	81, 372, 420
Bst4CI	ACNGT	4 cut(s)	330, 341, 551, 809
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	56, 202, 424
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	166, 941
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	4 cut(s)	169, 189, 519, 584
BstMBI	GATC	4 cut(s)	166, 186, 516, 581
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 61, 84, 203, 350, 669, 720
BstNI	CCWGG	3 cut(s)	81, 372, 420
BstSCI	CCNGG	4 cut(s)	79, 279, 370, 418
BstV1I	GCAGC	3 cut(s)	55, 71, 454
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	6 cut(s)	12, 232, 312, 468, 826, 940
BtgI	CCRYGG	1 cut(s)	638
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	166, 941
BtsIMutI	CAGTG	4 cut(s)	22, 547, 621, 772
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	416, 467, 695
Csp6I	GTAC	2 cut(s)	616, 635
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	3 cut(s)	190, 639, 660
CviQI	GTAC	2 cut(s)	616, 635
DdeI	CTNAG	3 cut(s)	56, 202, 424
DpnI	GATC	4 cut(s)	168, 188, 518, 583
DpnII	GATC	4 cut(s)	166, 186, 516, 581
EaeI	YGGCCR	4 cut(s)	10, 310, 824, 938
Eco130I	CCWWGG	2 cut(s)	638, 793
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	416, 695
Eco57I	CTGAAG	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoO109I	RGGNCCY	2 cut(s)	416, 467
EcoRII	CCWGG	3 cut(s)	79, 370, 418
EcoT14I	CCWWGG	2 cut(s)	638, 793
ErhI	CCWWGG	2 cut(s)	638, 793
FaeI	CATG	3 cut(s)	193, 642, 663
FaiI	YATR	8 cut(s)	119, 126, 191, 640, 661, 870, 902, 912
FatI	CATG	3 cut(s)	189, 638, 659
FauI	CCCGC	2 cut(s)	700, 897
Fnu4HI	GCNGC	4 cut(s)	44, 85, 443, 673
FokI	GGATG	2 cut(s)	173, 948
Fsp4HI	GCNGC	4 cut(s)	44, 85, 443, 673
FspAI	RTGCGCAY	1 cut(s)	546
FspBI	CTAG	5 cut(s)	644, 840, 852, 864, 952
FspI	TGCGCA	1 cut(s)	546
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	4 cut(s)	44, 85, 443, 673
GsaI	CCCAGC	2 cut(s)	479, 581
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	6 cut(s)	12, 232, 312, 468, 826, 940
HapII	CCGG	2 cut(s)	281, 460
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	193, 642, 663
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HindIII	AAGCTT	1 cut(s)	195
HpaII	CCGG	2 cut(s)	281, 460
Hpy188I	TCNGA	2 cut(s)	541, 586
Hpy188III	TCNNGA	6 cut(s)	104, 170, 269, 333, 483, 933
HpyAV	CCTTC	2 cut(s)	222, 516
HpyCH4III	ACNGT	4 cut(s)	330, 341, 551, 809
HpyCH4V	TGCA	6 cut(s)	39, 71, 211, 500, 561, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 61, 84, 203, 350, 669, 720
HpyF3I	CTNAG	3 cut(s)	56, 202, 424
Hsp92II	CATG	3 cut(s)	193, 642, 663
HspAI	GCGC	1 cut(s)	545
Kzo9I	GATC	4 cut(s)	166, 186, 516, 581
LmnI	GCTCC	2 cut(s)	295, 704
Lsp1109I	GCAGC	3 cut(s)	55, 71, 454
LweI	GCATC	4 cut(s)	58, 487, 532, 538
MaeI	CTAG	5 cut(s)	644, 840, 852, 864, 952
MaeIII	GTNAC	4 cut(s)	29, 275, 382, 605
MalI	GATC	4 cut(s)	168, 188, 518, 583
MbiI	CCGCTC	1 cut(s)	707
MboI	GATC	4 cut(s)	166, 186, 516, 581
MboII	GAAGA	2 cut(s)	264, 440
MfeI	CAATTG	3 cut(s)	34, 215, 492
MflI	RGATCY	1 cut(s)	581
MlsI	TGGCCA	2 cut(s)	312, 940
MluCI	AATT	7 cut(s)	34, 215, 315, 375, 492, 569, 655
MluNI	TGGCCA	2 cut(s)	312, 940
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	9 cut(s)	53, 86, 171, 303, 458, 479, 490, 696, 792
Mox20I	TGGCCA	2 cut(s)	312, 940
MscI	TGGCCA	2 cut(s)	312, 940
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	820
Msp20I	TGGCCA	2 cut(s)	312, 940
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	281, 460
MspR9I	CCNGG	4 cut(s)	81, 281, 372, 420
MunI	CAATTG	3 cut(s)	34, 215, 492
MvaI	CCWGG	3 cut(s)	81, 372, 420
MwoI	GCNNNNNNNGC	7 cut(s)	52, 61, 84, 203, 350, 669, 720
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	4 cut(s)	166, 186, 516, 581
NlaIII	CATG	3 cut(s)	193, 642, 663
NmuCI	GTSAC	2 cut(s)	382, 605
NsbI	TGCGCA	1 cut(s)	546
PceI	AGGCCT	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	45, 86, 444, 674
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	79, 370, 418
PspFI	CCCAGC	2 cut(s)	475, 577
PspGI	CCWGG	3 cut(s)	79, 370, 418
PspPI	GGNCC	3 cut(s)	416, 467, 695
PspPPI	RGGWCCY	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	617, 636
RsaNI	GTAC	2 cut(s)	616, 635
RseI	CAYNNNNRTG	1 cut(s)	820
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	4 cut(s)	44, 85, 443, 673
Sau3AI	GATC	4 cut(s)	166, 186, 516, 581
Sau96I	GGNCC	3 cut(s)	416, 467, 695
ScrFI	CCNGG	4 cut(s)	81, 281, 372, 420
SfaNI	GCATC	4 cut(s)	58, 487, 532, 538
SinI	GGWCC	2 cut(s)	416, 695
SmiMI	CAYNNNNRTG	1 cut(s)	820
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	7 cut(s)	34, 215, 315, 375, 492, 569, 655
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	673, 698, 707, 904
SspMI	CTAG	5 cut(s)	644, 840, 852, 864, 952
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	4 cut(s)	79, 279, 370, 418
StyI	CCWWGG	2 cut(s)	638, 793
TaaI	ACNGT	4 cut(s)	330, 341, 551, 809
TaqI	TCGA	4 cut(s)	325, 573, 733, 945
TasI	AATT	7 cut(s)	34, 215, 315, 375, 492, 569, 655
TauI	GCSGC	1 cut(s)	675
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	4 cut(s)	29, 554, 628, 772
TseFI	GTSAC	2 cut(s)	382, 605
TseI	GCWGC	3 cut(s)	43, 84, 442
Tsp45I	GTSAC	2 cut(s)	382, 605
TspDTI	ATGAA	2 cut(s)	113, 648
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	4 cut(s)	29, 554, 628, 772
VpaK11BI	GGWCC	2 cut(s)	416, 695
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	2 cut(s)	315, 569
XspI	CTAG	5 cut(s)	644, 840, 852, 864, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.