Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006416

Physical Location & Seq

Genomic Coordinates Forward (+)

19326504 .. 19330010

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAGTATTCCATTACCTACTCAACAATTTTTTGCTCGATATCTTGAATCCGTTGACAACGGGCGTCAGATAAAACATCAAATTCCTACTGAGAAGGAAGAAATCAAAGCTCAATCTGACATCAAGTCCCAAGCTTTCAAGAAACCCAGAACTTCTGAAGCCGTATCGAAGTCGAATGCGGCCTCAGGACAGAACAAAATGTTGCCTAGCTATTACAAGACCAAACTGTGCCGTAAATTCCAAATGGGTTGTTGCTCTTCTGGGCAGAGATGTTCCTTTGCTCATGGCACCAGTGATCTCCGCAGGACTTTGCGTGATGCGCAAGGAATGGAAACTGAGAAGGGAAACTTGGACAGGATGACTTGGAATGGTGATCATGGAAGTTCTAATGGAGTGAGAATATGCAGGTCGTTCTTTAGATGGGGAACATGCAGTTACGGAGACAAATGCCGCTTTCGTCATGTCAATCCTGAAAATATCAGAGATAGTTCGTTCATAAGCATTTCAACAGCTGGTGGTTCTGCTCAATTTGACTGCAAGAAGTCTCTGGAACTAAGGAAGCTTTGTGGCTATACTACACCAGAATGTGGAAGTGTGCAGGCTAACAGTTTAATGACTTATACGAGGGGCAACAATGCGTCAAATCGTAGGATGGGGGTTGCGACTGCTTATAAACATGGTCAGAGTACGCAGTGCAACTTAGAGTGGAACGAACTTGAGAAATTGAGTCGCATCTATGCTGATTGGATTGAAGATATGCCTCTTCTACATGGCTCATCAAGCAAAGTGGAGTGTTACTCGAGTTTAGATGGAAAGAATCACTCAGATATTGTAGATATATCATCTCTGAAGAATGTGAAACATGTTCATATCCTTCACATTGTGGAATATCCTAATTTGGACGAATCTGAAATTTATTGTGCAGAACGAGCACATAAGGATCCTCGGATGTCAATGGTGACGAATCATGTGTGCTTCCTTGGCCTTCAGTTTGTACAAGATGCCAAAATCTTGGGAGAAGAATGTCCAGCGCTGCAGAAGCTGCCACTTAAAAGAGGGCAGAAGCATTCTACGTCACTTGAAAGACCACCAGTACTCATGTCCTCTGATTACAATATTGCTCCTTTCAGCACTTGTGGAGTTGAGTGGAAGCTTTCTCAGCGCTGTACATGCAAGTACCTTGATTTCTTTCAGGTACGGAAAGGGCAGGGCTCTATCATGTATGCTATTCAGCATCTACACGAACTGAAGGCAAAGGAAGCAATTTTGTTTTATCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

KH_1 W2 zf-CCCH zf-CCCH_2

Protein Analysis

428

Amino Acids

48.45

Weight (kDa)

8.99

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_UNK	PF25427	70 - 102	6.1e-06	UNK-like, CCCH zinc finger
zf-CCCH	PF00642	132 - 155	4.3e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006416)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30290 FvH4_6g30290
malus_domestica	MD00G1136200.v1.1 MD17G1204700.v1.1 MD17G1205200.v1.1
prunus_persica	Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080200_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G080700_v2.0.a1 Prupe.3G083300_v2.0.a1
pyrus_communis	pycom04g02400 pycom04g02900 pycom08g16450 pycom17g20850 pycom17g20880 pycom17g20900
rosa_chinensis	RchiOBHm_Chr2g0136531
rosa_laevigata	RLG00000019539
rosa_multiflora	Rmu_sc0040875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108200
rosa_rugosa	Rorug02G0331700
rosa_samantha	Rh2AG382500 Rh2BG389100 Rh2CG368800 Rh2DG405800
rosa_wichuraiana	Rw2G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
Acc16I	TGCGCA	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	587
AciI	CCGC	3 cut(s)	179, 301, 451
AclWI	GGATC	2 cut(s)	935, 948
AcsI	RAATTY	3 cut(s)	81, 236, 912
AcuI	CTGAAG	4 cut(s)	177, 869, 971, 1268
AcyI	GRCGYC	1 cut(s)	64
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	6 cut(s)	688, 996, 1095, 1168, 1178, 1197
AfeI	AGCGCT	2 cut(s)	1032, 1163
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	47, 139, 507, 752, 1082
AhdI	GACNNNNNGTC	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	7 cut(s)	110, 134, 210, 512, 562, 1042, 1153
AluI	AGCT	7 cut(s)	110, 134, 210, 512, 562, 1042, 1153
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	2 cut(s)	435, 549
AlwI	GGATC	2 cut(s)	935, 948
AlwNI	CAGNNNCTG	1 cut(s)	1042
Ama87I	CYCGRG	1 cut(s)	799
Aor51HI	AGCGCT	2 cut(s)	1032, 1163
AoxI	GGCC	2 cut(s)	180, 982
ApeKI	GCWGC	2 cut(s)	1033, 1042
ApoI	RAATTY	3 cut(s)	81, 236, 912
AspLEI	GCGC	3 cut(s)	322, 1033, 1164
AsuHPI	GGTGA	2 cut(s)	383, 970
AvaI	CYCGRG	1 cut(s)	799
AxyI	CCTNAGG	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	1214
Bbv12I	GWGCWC	1 cut(s)	934
BbvI	GCAGC	2 cut(s)	1020, 1029
BccI	CCATC	3 cut(s)	414, 646, 803
BceAI	ACGGC	2 cut(s)	146, 216
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	435, 549
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	1034
BfoI	RGCGCY	2 cut(s)	1034, 1165
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	4 cut(s)	180, 451, 1034, 1043
BlsI	GCNGC	4 cut(s)	181, 452, 1035, 1044
BmcAI	AGTACT	1 cut(s)	1095
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	799
BmiI	GGNNCC	2 cut(s)	289, 942
BmsI	GCATC	4 cut(s)	307, 741, 991, 1243
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
BpuEI	CTTGAG	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	944, 979
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	291, 1091
Bse21I	CCTNAGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	944, 979
BseGI	GGATG	3 cut(s)	363, 657, 954
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMII	CTCAG	5 cut(s)	81, 198, 327, 837, 1172
BseNI	ACTGG	2 cut(s)	291, 1091
BseXI	GCAGC	2 cut(s)	1020, 1029
BsgI	GTGCAG	2 cut(s)	617, 942
BshFI	GGCC	2 cut(s)	182, 984
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	934
BsiHKCI	CYCGRG	1 cut(s)	799
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	435, 549
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	2 cut(s)	181, 1066
BsnI	GGCC	2 cut(s)	182, 984
BsoBI	CYCGRG	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	934, 1214
Bsp1407I	TGTACA	2 cut(s)	994, 1166
Bsp143I	GATC	3 cut(s)	295, 373, 940
BspACI	CCGC	3 cut(s)	179, 301, 451
BspANI	GGCC	2 cut(s)	182, 984
BspCNI	CTCAG	5 cut(s)	82, 197, 328, 836, 1171
BspLI	GGNNCC	2 cut(s)	289, 942
BspMAI	CTGCAG	1 cut(s)	1038
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	935, 948
BspQI	GCTCTTC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	287
BsrGI	TGTACA	2 cut(s)	994, 1166
BsrI	ACTGG	2 cut(s)	291, 1091
BssECI	CCNNGG	2 cut(s)	944, 979
BssMI	GATC	3 cut(s)	295, 373, 940
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	979
Bst4CI	ACNGT	2 cut(s)	228, 608
Bst6I	CTCTTC	2 cut(s)	262, 768
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	1042
BstAUI	TGTACA	2 cut(s)	994, 1166
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	7 cut(s)	90, 184, 336, 554, 700, 823, 1158
BstF5I	GGATG	3 cut(s)	363, 657, 954
BstH2I	RGCGCY	2 cut(s)	1034, 1165
BstHHI	GCGC	3 cut(s)	322, 1033, 1164
BstKTI	GATC	3 cut(s)	298, 376, 943
BstMAI	GTCTC	2 cut(s)	435, 549
BstMBI	GATC	3 cut(s)	295, 373, 940
BstMWI	GCNNNNNNNGC	9 cut(s)	319, 780, 929, 981, 1039, 1042, 1159, 1170, 1259
BstNSI	RCATGY	3 cut(s)	432, 866, 1173
BstSFI	CTRYAG	1 cut(s)	1034
BstV1I	GCAGC	2 cut(s)	1020, 1029
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	940
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	182, 984
BtsCI	GGATG	3 cut(s)	363, 657, 954
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	298, 698
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	1 cut(s)	1042
CfoI	GCGC	3 cut(s)	322, 1033, 1164
CseI	GACGC	2 cut(s)	53, 627
Csp6I	GTAC	6 cut(s)	687, 995, 1094, 1167, 1177, 1196
CspCI	CAANNNNNGTGG	2 cut(s)	768, 803
CviQI	GTAC	6 cut(s)	687, 995, 1094, 1167, 1177, 1196
DdeI	CTNAG	7 cut(s)	90, 184, 336, 554, 700, 823, 1158
DpnI	GATC	3 cut(s)	297, 375, 942
DpnII	GATC	3 cut(s)	295, 373, 940
DraIII	CACNNNGTG	1 cut(s)	883
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	262, 768
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	2 cut(s)	262, 768
Eco130I	CCWWGG	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	1214
Eco32I	GATATC	1 cut(s)	41
Eco47III	AGCGCT	2 cut(s)	1032, 1163
Eco57I	CTGAAG	4 cut(s)	177, 869, 971, 1268
Eco81I	CCTNAGG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	799
EcoRV	GATATC	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	979
EcoT38I	GRGCYC	1 cut(s)	1214
ErhI	CCWWGG	1 cut(s)	979
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	180, 451, 1034, 1043
FokI	GGATG	3 cut(s)	370, 664, 961
FriOI	GRGCYC	1 cut(s)	1214
Fsp4HI	GCNGC	4 cut(s)	180, 451, 1034, 1043
FspBI	CTAG	1 cut(s)	207
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	3 cut(s)	321, 1032, 1163
GluI	GCNGC	4 cut(s)	180, 451, 1034, 1043
HaeII	RGCGCY	2 cut(s)	1034, 1165
HaeIII	GGCC	2 cut(s)	182, 984
HgaI	GACGC	2 cut(s)	53, 627
HhaI	GCGC	3 cut(s)	322, 1033, 1164
Hin1I	GRCGYC	1 cut(s)	64
Hin6I	GCGC	3 cut(s)	320, 1031, 1162
HinP1I	GCGC	3 cut(s)	320, 1031, 1162
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	3 cut(s)	132, 560, 1151
HinfI	GANTC	5 cut(s)	47, 727, 817, 905, 964
HphI	GGTGA	2 cut(s)	383, 970
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	5 cut(s)	44, 139, 186, 470, 548
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	5 cut(s)	88, 334, 884, 995, 1243
HpyCH4III	ACNGT	2 cut(s)	228, 608
HpyCH4IV	ACGT	1 cut(s)	1073
HpyCH4V	TGCA	8 cut(s)	405, 432, 537, 598, 696, 923, 1036, 1173
HpyF10VI	GCNNNNNNNGC	9 cut(s)	319, 780, 929, 981, 1039, 1042, 1159, 1170, 1259
HpyF3I	CTNAG	7 cut(s)	90, 184, 336, 554, 700, 823, 1158
HpySE526I	ACGT	1 cut(s)	1073
Hsp92I	GRCGYC	1 cut(s)	64
HspAI	GCGC	3 cut(s)	320, 1031, 1162
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	295, 373, 940
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	1126
Lsp1109I	GCAGC	2 cut(s)	1020, 1029
LweI	GCATC	4 cut(s)	307, 741, 991, 1243
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	1073
MaeIII	GTNAC	4 cut(s)	434, 794, 958, 1074
MalI	GATC	3 cut(s)	297, 375, 942
MboI	GATC	3 cut(s)	295, 373, 940
MboII	GAAGA	6 cut(s)	110, 249, 755, 764, 862, 1031
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	934, 1214
MluCI	AATT	8 cut(s)	26, 81, 236, 527, 722, 895, 912, 1263
MlyI	GAGTC	1 cut(s)	736
MnlI	CCTC	6 cut(s)	193, 618, 771, 954, 1049, 1114
MseI	TTAA	3 cut(s)	611, 1050, 1282
MslI	CAYNNNNRTG	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	512
Mva1269I	GAATGC	2 cut(s)	181, 1066
MwoI	GCNNNNNNNGC	9 cut(s)	319, 780, 929, 981, 1039, 1042, 1159, 1170, 1259
NdeII	GATC	3 cut(s)	295, 373, 940
NlaIV	GGNNCC	2 cut(s)	289, 942
NmuCI	GTSAC	2 cut(s)	958, 1074
NsbI	TGCGCA	1 cut(s)	321
NspI	RCATGY	3 cut(s)	432, 866, 1173
PaeR7I	CTCGAG	1 cut(s)	799
PciI	ACATGT	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	2 cut(s)	181, 1066
PfeI	GAWTC	4 cut(s)	47, 817, 905, 964
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	181, 452, 1035, 1044
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PscI	ACATGT	1 cut(s)	862
PsiI	TTATAA	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	289, 942
PspXI	VCTCGAGB	1 cut(s)	799
PstI	CTGCAG	1 cut(s)	1038
PstNI	CAGNNNCTG	1 cut(s)	1042
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	6 cut(s)	688, 996, 1095, 1168, 1178, 1197
RsaNI	GTAC	6 cut(s)	687, 995, 1094, 1167, 1177, 1196
RseI	CAYNNNNRTG	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	611, 1050, 1282
SatI	GCNGC	4 cut(s)	180, 451, 1034, 1043
Sau3AI	GATC	3 cut(s)	295, 373, 940
ScaI	AGTACT	1 cut(s)	1095
SchI	GAGTC	1 cut(s)	736
SduI	GDGCHC	2 cut(s)	934, 1214
SfaNI	GCATC	4 cut(s)	307, 741, 991, 1243
SfcI	CTRYAG	1 cut(s)	1034
Sfr274I	CTCGAG	1 cut(s)	799
SlaI	CTCGAG	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	583
SmlI	CTYRAG	2 cut(s)	716, 799
SmoI	CTYRAG	2 cut(s)	716, 799
Sse9I	AATT	8 cut(s)	26, 81, 236, 527, 722, 895, 912, 1263
SsiI	CCGC	3 cut(s)	179, 301, 451
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	2 cut(s)	228, 608
TaiI	ACGT	1 cut(s)	1076
TaqI	TCGA	4 cut(s)	37, 167, 173, 800
TasI	AATT	8 cut(s)	26, 81, 236, 527, 722, 895, 912, 1263
TatI	WGTACW	3 cut(s)	994, 1093, 1166
TauI	GCSGC	2 cut(s)	182, 453
TfiI	GAWTC	4 cut(s)	47, 817, 905, 964
Tru1I	TTAA	3 cut(s)	611, 1050, 1282
Tru9I	TTAA	3 cut(s)	611, 1050, 1282
TscAI	CASTG	2 cut(s)	298, 698
TseFI	GTSAC	2 cut(s)	958, 1074
TseI	GCWGC	2 cut(s)	1033, 1042
Tsp45I	GTSAC	2 cut(s)	958, 1074
TspDTI	ATGAA	2 cut(s)	484, 857
TspGWI	ACGGA	3 cut(s)	40, 453, 1213
TspRI	CASTG	2 cut(s)	298, 698
Van91I	CCANNNNNTGG	1 cut(s)	587
XapI	RAATTY	3 cut(s)	81, 236, 912
XceI	RCATGY	3 cut(s)	432, 866, 1173
XhoI	CTCGAG	1 cut(s)	799
XspI	CTAG	1 cut(s)	207
ZrmI	AGTACT	1 cut(s)	1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.