Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594359 .. 19596815

Gene Structure 2457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGTCTAAAACCCTTCTCTCTCGCATCAAACCCTTTCACAACCGAAAGCCCACTTCTTCTTCTTCTCCACCACCTCCCCACGTCAAGAGACTAGTCAATGACACCATCCAAATCCTCAGAACCCAACATCATTGGGAGCAATCTCTCCAAACCCAATTCTCCGAAACCGAAACGCTTGTTTCCGACGTTGCCCATTTCGTTTTGGACCGAGTGCACGATGTAGATTTGGGTTTGAAGTTCTTTGACTGGGCATTCAAGCGACCCTACTGCTGCTCTCCAGATGGGTCTGCGTATTCTTCGCTTTTGAAGCTTCTGGCGAGGTTTCGGATGCTTTCGGAGATCGATTTGGTGATGGATAAGGTGAAATTGGAAGAAGTAAAGCCGACCCATGATGCGTTGAGCTTTGTAATTCGAGCTTATGCGGATTCTGGGATGGTTGGTAAAGCTCTTGACTTGTATGATATTGTGGTTAAGGTGTATGGTGTAGTTCCGAGTGTTTTCGCGTGTAATTCGTTGTTATATGTTCTTGTGAAAAATAGGAGAGTTGACGTTGCACGCCGGGTGTATGACGAAATGGCTGAGAGAGGTGGCGGTGAGCATTTGTGTATGGATAACTATAGTACTTGTATAATGGTGAAGGGGTTGTGTAAGGAAGGGAAGGTTGAGGAAGGTAGAAAATTAATTGCGGATAGGTGGGGAAAGAGTTGTGTTCCAAATGTTGTTTTTTACAATACGCTTATTGATGGATATTGCAAAAAAGGTGATGTTGAAAGTGCTAATGTGATTTTTAAAGAGTTGAAATCGAAGGGGTTTTTGCCCACTCTGGAAACTTATGGAGCTATGATAAATGGGTATTGCAAAGAAGGAAAGTTTAAAGCGATTGATCGGCTTTTCATGGAAATGAAGGAGAGAGGCTTGCATATTAATGTTCAAGTACGTAATAATATTGTCGATGCTAGATGTAAGCATGGTAGCTTGGTTAAAGGAGTGGAGGCAGTAAAGCAGATGATTGAGAGTGGTTGTGAGCCAGATATTACAACCTACAATATTTTGATTCATAATTCATGCAAGGATGGGAAGGTTAAGGAAGCTGAACAGTTTATAAACCACGCGATGGAGAGAGGATTGGTGCCAAATAAGTTTAGTTATACTCCTCTTTTTCACGCTTATTTCAGACAACAGGAGCACAGAAGGGCCTTGGATTTGTTTACTAAGATTACAGAAAGGGGATACAAACCTGATCTGGTTTCTTATGGAGCTCTCATCCATGGACTTGTTGTTTCTGAGGAAGTCGATGTTGCAATGACAGTTCGGGACAGAATGATGGAAAGTGGAGTAGTCCCTGATGCTCACATTTACAATGTTTTGATGAGTGGCCTTTGTAAGAAGGGGAGGCTTCCTACTGCCAAGTTGCTGCTTGGTCAGATGCTTGACCAAAATGTACCACCAGATGCATATGTTTATGCCACTCTGGTGGACGGGCTAATCAGAATTGGTGACCTTGAGGAAGCAAAAAAAATATTTGGGTTAACTATTGAAAAGGGTCTAAACCCCGGTGTTGTGGGGTACAATGCTATGATTAAGGGTTTCTGCAAATTTGGAATGATGACGGATGCACTTTCTTGCTTTGAGAAAATGCGGAAAGTGCATCATCGTCCTGATGGATTCACGTATTCTACAATTATTGATGGGTATGTCAAGCAGCATAACTTGGATGCTGCTCTAAGTTTCTTTGAACTGATGGTCAAACAGGGATGCAAGCCAAATGTGGTCACATACACCTCCTTGATCTATGGGTTTTGCCACAAGGGAGATTCTTGCAGAGCTGTAAAAACTTTCAAAGAGATGAAATCCATTGGCTTGGAGCCAAATGTAGTCACATATAGCATACTTATTGGAACATTTTGCAAGGAAGGTAACCTTGCAAATGCCGCCTCCTTTTTTGAACTAATGCTGAAGAACAAGTGCATTCCTAATGACGTCACCTTCCATTATCTGGTAAATGGGTTCACAAACAATGAACCTGGTGCGATTCCAAAGGAAGTTAACGAGTCCCAACAAAATGAAAAATCTATTTTTCTGGGGGTTTTCAGAAGGATGATATCAGATGGATGGTTTCAAAAGGCTGCTGTTTATAATTCCATTATCATTTGCCTTTGCCATCATGGGATGGTTAAAACTGCATTACAGCTGTGTGAAAAGTATGTTAATAATGGCATCCTTCTAGATTCTTTTTCCTTTGCTGGTCTGCTGCATGGTATTTGCTTGGAAGGAAGATCCAAGGAATGGAAGAGTATCATCCCTTTTAACTTGAAGGATCAGGAATTCCAAACTGCTGTCAAATTCTCACGTATAATAGATGATTACTTACATCAAGGGAGAGCATCTGAAGCTACACATATTTTGCAGTCATTGGTCAACGACCTTATGTCTCGAGACCAACAAGTGGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1 PPR PPR_1 PPR_2 PPR_3 p450

Protein Analysis

819

Amino Acids

92.36

Weight (kDa)

8.52

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	164 - 217	1.1e-07	PPR repeat family
PPR_1	PF12854	234 - 266	2.4e-11	PPR repeat
PPR_2	PF13041	238 - 287	2e-17	PPR repeat family
PPR_3	PF13812	238 - 286	1e-07	Pentatricopeptide repeat domain
PPR	PF01535	241 - 271	2e-08	PPR repeat
PPR_2	PF13041	274 - 310	1.1e-08	PPR repeat family
PPR	PF01535	277 - 306	5.9e-08	PPR repeat
PPR_2	PF13041	312 - 357	1.7e-08	PPR repeat family
PPR_1	PF12854	340 - 369	7e-10	PPR repeat
PPR_2	PF13041	343 - 390	1.8e-10	PPR repeat family
PPR_2	PF13041	381 - 425	9.2e-08	PPR repeat family
PPR_3	PF13812	402 - 458	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	445 - 476	8.9e-07	PPR repeat
PPR_2	PF13041	448 - 496	8.7e-11	PPR repeat family
PPR_3	PF13812	472 - 530	5.6e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	514 - 567	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	514 - 547	4e-08	PPR repeat
PPR_2	PF13041	518 - 565	9.8e-15	PPR repeat family
PPR	PF01535	523 - 548	3.2e-07	PPR repeat
PPR_long	PF17177	539 - 651	9.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	543 - 597	7.2e-10	Pentatricopeptide repeat domain
PPR	PF01535	556 - 586	4.8e-06	PPR repeat
PPR_2	PF13041	556 - 602	2.3e-16	PPR repeat family
PPR_3	PF13812	578 - 637	4.5e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	585 - 617	1.2e-10	PPR repeat
PPR_2	PF13041	588 - 637	5.4e-17	PPR repeat family
PPR_1	PF12854	620 - 651	2e-10	PPR repeat
PPR_2	PF13041	630 - 671	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1103, 2136
AatII	GACGTC	1 cut(s)	1983
AccB1I	GGYRCC	1 cut(s)	1129
AccB7I	CCANNNNNTGG	4 cut(s)	1114, 1996, 2286, 2446
AccII	CGCG	2 cut(s)	503, 1112
AciI	CCGC	5 cut(s)	422, 591, 686, 1639, 1932
AclWI	GGATC	2 cut(s)	2271, 2325
AcsI	RAATTY	3 cut(s)	1595, 2324, 2342
AcuI	CTGAAG	2 cut(s)	1976, 2409
AcyI	GRCGYC	1 cut(s)	1980
AfaI	GTAC	4 cut(s)	622, 936, 1443, 1568
AfiI	CCNNNNNNNGG	4 cut(s)	1114, 1996, 2286, 2446
AhdI	GACNNNNNGTC	1 cut(s)	2428
AhlI	ACTAGT	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	2023
AleI	CACNNNNGTG	1 cut(s)	1472
Alw21I	GWGCWC	3 cut(s)	216, 1188, 1261
Alw26I	GTCTC	3 cut(s)	82, 2430, 2436
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	2271, 2325
Ama87I	CYCGRG	1 cut(s)	2433
AoxI	GGCC	2 cut(s)	1194, 1375
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	6 cut(s)	270, 1414, 1702, 1718, 2126, 2251
ApoI	RAATTY	3 cut(s)	1595, 2324, 2342
AseI	ATTAAT	2 cut(s)	680, 924
AspS9I	GGNCC	2 cut(s)	205, 1194
AsuC2I	CCSGG	2 cut(s)	560, 1554
AsuHPI	GGTGA	7 cut(s)	361, 373, 605, 646, 773, 1508, 1975
AvaI	CYCGRG	1 cut(s)	2433
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	1129
BanII	GRGCYC	1 cut(s)	1261
Bbv12I	GWGCWC	3 cut(s)	216, 1188, 1261
BbvI	GCAGC	6 cut(s)	257, 1401, 1705, 1714, 2113, 2238
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BciT130I	CCWGG	1 cut(s)	2025
BciVI	GTATCC	1 cut(s)	1223
BcnI	CCSGG	2 cut(s)	560, 1554
BcoDI	GTCTC	3 cut(s)	82, 2430, 2436
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	3 cut(s)	92, 957, 2225
BfmI	CTRYAG	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	1223
BisI	GCNGC	7 cut(s)	271, 1415, 1703, 1719, 1932, 2127, 2252
BlsI	GCNGC	7 cut(s)	272, 1416, 1704, 1720, 1933, 2128, 2253
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	3 cut(s)	560, 1554, 2025
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	2428
BmeT110I	CYCGRG	1 cut(s)	2433
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	205, 1194
BmiI	GGNNCC	2 cut(s)	1131, 1866
BmrFI	CCNGG	3 cut(s)	560, 1554, 2025
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	1523
BpuMI	CCSGG	2 cut(s)	560, 1554
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	3 cut(s)	938, 1671, 2351
BsaHI	GRCGYC	1 cut(s)	1980
BsaI	GGTCTC	1 cut(s)	2430
BsaJI	CCNNGG	4 cut(s)	1197, 1267, 1552, 2280
Bsc4I	CCNNNNNNNGG	4 cut(s)	1114, 1996, 2286, 2446
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	1308
BseBI	CCWGG	1 cut(s)	2025
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	1197, 1267, 1552, 2280
BseLI	CCNNNNNNNGG	4 cut(s)	1114, 1996, 2286, 2446
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	3 cut(s)	130, 570, 1275
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	1143
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	6 cut(s)	257, 1401, 1705, 1714, 2113, 2238
Bsh1236I	CGCG	2 cut(s)	503, 1112
BshFI	GGCC	2 cut(s)	1196, 1377
BshNI	GGYRCC	1 cut(s)	1129
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	3 cut(s)	216, 1188, 1261
BsiHKCI	CYCGRG	1 cut(s)	2433
BsiSI	CCGG	2 cut(s)	559, 1554
BslFI	GGGAC	3 cut(s)	1325, 1328, 2038
BslI	CCNNNNNNNGG	4 cut(s)	1114, 1996, 2286, 2446
BsmAI	GTCTC	3 cut(s)	82, 2430, 2436
BsmFI	GGGAC	3 cut(s)	1325, 1328, 2038
BsmI	GAATGC	2 cut(s)	251, 1968
BsnI	GGCC	2 cut(s)	1196, 1377
Bso31I	GGTCTC	1 cut(s)	2430
BsoBI	CYCGRG	1 cut(s)	2433
Bsp1286I	GDGCHC	3 cut(s)	216, 1188, 1261
Bsp143I	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
Bsp19I	CCATGG	1 cut(s)	1267
BspACI	CCGC	5 cut(s)	422, 591, 686, 1639, 1932
BspANI	GGCC	2 cut(s)	1196, 1377
BspCNI	CTCAG	3 cut(s)	129, 571, 1276
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	503, 1112
BspLI	GGNNCC	2 cut(s)	1131, 1866
BspPI	GGATC	2 cut(s)	2271, 2325
BspT107I	GGYRCC	1 cut(s)	1129
BspTNI	GGTCTC	1 cut(s)	2430
BsrDI	GCAATG	1 cut(s)	1308
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	1197, 1267, 1552, 2280
BssMI	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
BssNI	GRCGYC	1 cut(s)	1980
BssT1I	CCWWGG	3 cut(s)	1197, 1267, 2280
Bst2UI	CCWGG	1 cut(s)	2025
Bst4CI	ACNGT	2 cut(s)	1098, 1309
Bst6I	CTCTTC	1 cut(s)	2285
BstACI	GRCGYC	1 cut(s)	1980
BstBAI	YACGTR	3 cut(s)	938, 1671, 2351
BstC8I	GCNNGC	3 cut(s)	556, 917, 1760
BstDEI	CTNAG	5 cut(s)	116, 579, 1212, 1284, 1724
BstDSI	CCRYGG	1 cut(s)	1267
BstEII	GGTNACC	2 cut(s)	1496, 1916
BstFNI	CGCG	2 cut(s)	503, 1112
BstKTI	GATC	7 cut(s)	342, 886, 1243, 1791, 2279, 2320, 2452
BstMAI	GTCTC	3 cut(s)	82, 2430, 2436
BstMBI	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 1645, 1931, 2390
BstNI	CCWGG	1 cut(s)	2025
BstPI	GGTNACC	2 cut(s)	1496, 1916
BstSCI	CCNGG	3 cut(s)	558, 1552, 2023
BstSFI	CTRYAG	1 cut(s)	616
BstSLI	GKGCMC	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	938
BstUI	CGCG	2 cut(s)	503, 1112
BstV1I	GCAGC	6 cut(s)	257, 1401, 1705, 1714, 2113, 2238
BstX2I	RGATCY	2 cut(s)	2276, 2449
BstXI	CCANNNNNNTGG	2 cut(s)	1474, 1861
BstYI	RGATCY	2 cut(s)	2276, 2449
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	1223
BsuRI	GGCC	2 cut(s)	1196, 1377
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	1267
BtgZI	GCGATG	1 cut(s)	1127
BtrI	CACGTC	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	556, 917, 1760
Cfr13I	GGNCC	2 cut(s)	205, 1194
ClaI	ATCGAT	1 cut(s)	342
CsiI	ACCWGGT	1 cut(s)	2023
Csp6I	GTAC	4 cut(s)	621, 935, 1442, 1567
CviAII	CATG	7 cut(s)	389, 895, 968, 1065, 1268, 2165, 2255
CviQI	GTAC	4 cut(s)	621, 935, 1442, 1567
DdeI	CTNAG	5 cut(s)	116, 579, 1212, 1284, 1724
DpnI	GATC	7 cut(s)	341, 885, 1242, 1790, 2278, 2319, 2451
DpnII	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
DraI	TTTAAA	2 cut(s)	790, 874
DriI	GACNNNNNGTC	1 cut(s)	2428
Eam1104I	CTCTTC	1 cut(s)	2285
Eam1105I	GACNNNNNGTC	1 cut(s)	2428
EarI	CTCTTC	1 cut(s)	2285
Ecl136II	GAGCTC	1 cut(s)	1259
Eco105I	TACGTA	1 cut(s)	938
Eco130I	CCWWGG	3 cut(s)	1197, 1267, 2280
Eco24I	GRGCYC	1 cut(s)	1261
Eco31I	GGTCTC	1 cut(s)	2430
Eco32I	GATATC	1 cut(s)	2103
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	1259
Eco57I	CTGAAG	2 cut(s)	1976, 2409
Eco88I	CYCGRG	1 cut(s)	2433
Eco91I	GGTNACC	2 cut(s)	1496, 1916
EcoICRI	GAGCTC	1 cut(s)	1259
EcoO109I	RGGNCCY	1 cut(s)	1194
EcoO65I	GGTNACC	2 cut(s)	1496, 1916
EcoRI	GAATTC	1 cut(s)	2324
EcoRII	CCWGG	1 cut(s)	2023
EcoRV	GATATC	1 cut(s)	2103
EcoT14I	CCWWGG	3 cut(s)	1197, 1267, 2280
EcoT22I	ATGCAT	1 cut(s)	1456
EcoT38I	GRGCYC	1 cut(s)	1261
ErhI	CCWWGG	3 cut(s)	1197, 1267, 2280
FaeI	CATG	7 cut(s)	392, 898, 971, 1068, 1271, 2168, 2258
FalI	AAGNNNNNCTT	3 cut(s)	1905, 1937, 2436
FaqI	GGGAC	3 cut(s)	1325, 1328, 2038
FatI	CATG	7 cut(s)	388, 894, 967, 1064, 1267, 2164, 2254
FauNDI	CATATG	1 cut(s)	1456
Fnu4HI	GCNGC	7 cut(s)	271, 1415, 1703, 1719, 1932, 2127, 2252
FriOI	GRGCYC	1 cut(s)	1261
Fsp4HI	GCNGC	7 cut(s)	271, 1415, 1703, 1719, 1932, 2127, 2252
FspBI	CTAG	3 cut(s)	92, 957, 2225
GluI	GCNGC	7 cut(s)	271, 1415, 1703, 1719, 1932, 2127, 2252
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	1196, 1377
HapII	CCGG	2 cut(s)	559, 1554
Hin1I	GRCGYC	1 cut(s)	1980
Hin1II	CATG	7 cut(s)	392, 898, 971, 1068, 1271, 2168, 2258
HincII	GTYRAC	4 cut(s)	547, 1530, 2047, 2419
HindII	GTYRAC	4 cut(s)	547, 1530, 2047, 2419
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	7 cut(s)	425, 1054, 1665, 1814, 2032, 2051, 2228
HpaI	GTTAAC	2 cut(s)	1530, 2047
HpaII	CCGG	2 cut(s)	559, 1554
HphI	GGTGA	7 cut(s)	361, 373, 605, 646, 773, 1508, 1975
Hpy166II	GTNNAC	8 cut(s)	214, 547, 1209, 1477, 1530, 2010, 2047, 2419
Hpy8I	GTNNAC	8 cut(s)	214, 547, 1209, 1477, 1530, 2010, 2047, 2419
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	1098, 1309
HpyCH4IV	ACGT	7 cut(s)	81, 186, 549, 937, 1670, 1980, 2350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 1645, 1931, 2390
HpyF3I	CTNAG	5 cut(s)	116, 579, 1212, 1284, 1724
HpySE526I	ACGT	7 cut(s)	81, 186, 549, 937, 1670, 1980, 2350
Hsp92I	GRCGYC	1 cut(s)	1980
Hsp92II	CATG	7 cut(s)	392, 898, 971, 1068, 1271, 2168, 2258
KspAI	GTTAAC	2 cut(s)	1530, 2047
Kzo9I	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
LmnI	GCTCC	5 cut(s)	136, 836, 1183, 1256, 1864
Lsp1109I	GCAGC	6 cut(s)	257, 1401, 1705, 1714, 2113, 2238
MabI	ACCWGGT	1 cut(s)	2023
MaeI	CTAG	3 cut(s)	92, 957, 2225
MaeII	ACGT	7 cut(s)	81, 186, 549, 937, 1670, 1980, 2350
MaeIII	GTNAC	5 cut(s)	1496, 1771, 1876, 1916, 1981
MalI	GATC	7 cut(s)	341, 885, 1242, 1790, 2278, 2319, 2451
MboI	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
MboII	GAAGA	8 cut(s)	48, 51, 54, 288, 383, 1969, 2286, 2302
MflI	RGATCY	2 cut(s)	2276, 2449
MhlI	GDGCHC	3 cut(s)	216, 1188, 1261
MlyI	GAGTC	1 cut(s)	2060
MmeI	TCCRAC	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	1456
MslI	CAYNNNNRTG	3 cut(s)	899, 924, 1472
MspA1I	CMGCKG	1 cut(s)	2191
MspI	CCGG	2 cut(s)	559, 1554
MspR9I	CCNGG	3 cut(s)	560, 1554, 2025
Mva1269I	GAATGC	2 cut(s)	251, 1968
MvaI	CCWGG	1 cut(s)	2025
MvnI	CGCG	2 cut(s)	503, 1112
MwoI	GCNNNNNNNGC	4 cut(s)	307, 1645, 1931, 2390
NciI	CCSGG	2 cut(s)	560, 1554
NcoI	CCATGG	1 cut(s)	1267
NdeI	CATATG	1 cut(s)	1456
NdeII	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
NlaIII	CATG	7 cut(s)	392, 898, 971, 1068, 1271, 2168, 2258
NlaIV	GGNNCC	2 cut(s)	1131, 1866
NmuCI	GTSAC	4 cut(s)	1496, 1771, 1876, 1981
NsiI	ATGCAT	1 cut(s)	1456
OliI	CACNNNNGTG	1 cut(s)	1472
PaeR7I	CTCGAG	1 cut(s)	2433
PctI	GAATGC	2 cut(s)	251, 1968
PfeI	GAWTC	6 cut(s)	425, 1054, 1665, 1814, 2032, 2228
PflMI	CCANNNNNTGG	4 cut(s)	1114, 1996, 2286, 2446
PkrI	GCNGC	7 cut(s)	272, 1416, 1704, 1720, 1933, 2128, 2253
PleI	GAGTC	1 cut(s)	2059
PpsI	GAGTC	1 cut(s)	2059
Ppu21I	YACGTR	3 cut(s)	938, 1671, 2351
PshBI	ATTAAT	2 cut(s)	680, 924
PsiI	TTATAA	2 cut(s)	1103, 2136
Psp124BI	GAGCTC	1 cut(s)	1261
Psp6I	CCWGG	1 cut(s)	2023
PspEI	GGTNACC	2 cut(s)	1496, 1916
PspGI	CCWGG	1 cut(s)	2023
PspN4I	GGNNCC	2 cut(s)	1131, 1866
PspPI	GGNCC	2 cut(s)	205, 1194
PsuI	RGATCY	2 cut(s)	2276, 2449
PvuII	CAGCTG	1 cut(s)	2191
RsaI	GTAC	4 cut(s)	622, 936, 1443, 1568
RsaNI	GTAC	4 cut(s)	621, 935, 1442, 1567
RseI	CAYNNNNRTG	3 cut(s)	899, 924, 1472
SacI	GAGCTC	1 cut(s)	1261
SatI	GCNGC	7 cut(s)	271, 1415, 1703, 1719, 1932, 2127, 2252
Sau3AI	GATC	7 cut(s)	339, 883, 1240, 1788, 2276, 2317, 2449
Sau96I	GGNCC	2 cut(s)	205, 1194
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	1 cut(s)	2060
ScrFI	CCNGG	3 cut(s)	560, 1554, 2025
SduI	GDGCHC	3 cut(s)	216, 1188, 1261
SexAI	ACCWGGT	1 cut(s)	2023
SfcI	CTRYAG	1 cut(s)	616
Sfr274I	CTCGAG	1 cut(s)	2433
SinI	GGWCC	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	2433
SmiMI	CAYNNNNRTG	3 cut(s)	899, 924, 1472
SmlI	CTYRAG	2 cut(s)	1502, 2433
SmoI	CTYRAG	2 cut(s)	1502, 2433
SnaBI	TACGTA	1 cut(s)	938
SpeI	ACTAGT	1 cut(s)	91
SsiI	CCGC	5 cut(s)	422, 591, 686, 1639, 1932
SspI	AATATT	3 cut(s)	946, 1048, 1521
SspMI	CTAG	3 cut(s)	92, 957, 2225
SstI	GAGCTC	1 cut(s)	1261
StyD4I	CCNGG	3 cut(s)	558, 1552, 2023
StyI	CCWWGG	3 cut(s)	1197, 1267, 2280
TaaI	ACNGT	2 cut(s)	1098, 1309
TaiI	ACGT	7 cut(s)	84, 189, 552, 940, 1673, 1983, 2353
TaqI	TCGA	6 cut(s)	342, 412, 803, 951, 1293, 2434
TaqII	GACCGA	1 cut(s)	222
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	1 cut(s)	1934
TfiI	GAWTC	6 cut(s)	425, 1054, 1665, 1814, 2032, 2228
TseFI	GTSAC	4 cut(s)	1496, 1771, 1876, 1981
TseI	GCWGC	6 cut(s)	270, 1414, 1702, 1718, 2126, 2251
Tsp45I	GTSAC	4 cut(s)	1496, 1771, 1876, 1981
TspDTI	ATGAA	7 cut(s)	883, 917, 1046, 1053, 1862, 2034, 2079
TspGWI	ACGGA	1 cut(s)	1625
Van91I	CCANNNNNTGG	4 cut(s)	1114, 1996, 2286, 2446
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	2 cut(s)	680, 924
XapI	RAATTY	3 cut(s)	1595, 2324, 2342
XbaI	TCTAGA	1 cut(s)	2224
XhoI	CTCGAG	1 cut(s)	2433
XspI	CTAG	3 cut(s)	92, 957, 2225
ZraI	GACGTC	1 cut(s)	1981
ZrmI	AGTACT	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	1456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.