pycom17g21550
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013935
Physical Location & Seq
Forward (+)
19932526 .. 19935886
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGCTTCTGAGAAGCTCCTCGACACCCATCCTGAACTCATGGATGTCCCACTGCAAAGACTCCTCGCCGGAGCCGGAGCCACTCCTCTCTAGAACCAGGTCTGTCTCCCTATCATTGTGCACCTTTCACTCACCTACAACTGACGCAACAATAACCCAAGTCTCCCTAGAATCCGACATCAAAATCCAACAGAAACCCAGAAACAAGAAGCTTAACCTCCCCATACCTCGAAGCCTCCGGGAGAAATCGAAAACCAAGGCCGAGAAACCAGAGGAACCGGAAGAGGAGATAAAACCCAGTTCGAGATTGTCGTTCGAAGCTGAAAGGCTGTTTTCTAGCTCTGGTTTGGGGGAGGAAATCATGGATGGTGAGGACTGTGGTGGGGGGAAGAAGAAAGAGAGTGTTTTGCAGACGCTGGTGATGGGGGGCGGTGTGGGGAATAATGGCGGGAAGATTTGCGGCGGCGGAGGTGGCGGGAAAGGATCGGACGGCGGAGAAGGAAGTGGGTTTGCTTTCTTTGAGGGTAATAATCGTGGGAGTGGGAGTACTGATGCTTATTATCAGAAGATGATTGAAGCTGACCCGGGAAATGCTCTCTTACTTGGAAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGATTATGAGAAAGCAGAGGAGTATTGTGGAAGATCAATCTTGGCGAACCCGAGTGATGCGAATACCTTATCACTATACGGTGATCTAATATGGAATGCTCACAAGGATGCTGAACGAGCTGAGAATTATTTTGATCAAGCAGTTAAAACTTCCCCAGACGACTGTTATGTCCTGGCTTCATATGCTCATTTCCTTTGGGATGCTGAAGACGACGAAGATGATGAAGAAAATCAAGGGATTCAACGTGAAACCGACCGGAGCCACACATCCTCATCGAATTTCTTCCATGGATCTCCTCACCACTCTCCCTTAACTGCAGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17 TPR_19

Protein Analysis

322

Amino Acids

34.92

Weight (kDa)

5.0

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80130
fragaria_vesca FvH4_6g29850
malus_domestica MD17G1210200.v1.1
prunus_persica Prupe.3G085500_v2.0.a1
pyrus_communis pycom17g21550
rosa_chinensis RchiOBHm_Chr2g0135711
rosa_laevigata RLG00000019480
rosa_multiflora Rmu_co8281553.1_g000001 Rmu_sc0007848.1_g000039 Rmu_sc0029724.1_g000001
rosa_roxburghii Rroxscaffold_2G00108970
rosa_rugosa Rorug02G0325900
rosa_samantha Rh2AG377600 Rh2BG383900 Rh2CG363200 Rh2DG400300
rosa_wichuraiana Rw2G030760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AciI CCGC 7 cut(s) 429, 447, 459, 462, 465, 474, 492
AclWI GGATC 2 cut(s) 490, 937
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 1 cut(s) 547
AgsI TTSAA 2 cut(s) 575, 881
AjnI CCWGG 2 cut(s) 95, 810
AluBI AGCT 6 cut(s) 15, 211, 320, 339, 578, 758
AluI AGCT 6 cut(s) 15, 211, 320, 339, 578, 758
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 109, 166
Alw44I GTGCAC 1 cut(s) 118
AlwI GGATC 2 cut(s) 490, 937
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 2 cut(s) 583, 688
AoxI GGCC 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 956
ApoI RAATTY 1 cut(s) 916
Asp700I GAANNNNTTC 1 cut(s) 920
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 3 cut(s) 239, 584, 585
AsuHPI GGTGA 5 cut(s) 123, 380, 430, 731, 929
AsuII TTCGAA 1 cut(s) 315
AvaI CYCGRG 2 cut(s) 583, 688
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 3 cut(s) 35, 359, 415
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 97, 812
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 3 cut(s) 239, 584, 585
BcoDI GTCTC 2 cut(s) 109, 166
BfaI CTAG 3 cut(s) 90, 167, 336
BfmI CTRYAG 1 cut(s) 954
BisI GCNGC 3 cut(s) 460, 463, 957
BlsI GCNGC 3 cut(s) 461, 464, 958
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 5 cut(s) 97, 239, 584, 585, 812
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 2 cut(s) 583, 688
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 4 cut(s) 72, 78, 276, 899
BmrFI CCNGG 5 cut(s) 97, 239, 584, 585, 812
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 4 cut(s) 541, 685, 736, 829
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 315
BpuMI CCSGG 3 cut(s) 239, 584, 585
BsaJI CCNNGG 4 cut(s) 255, 583, 634, 925
BsaWI WCCGGW 2 cut(s) 277, 894
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 97, 812
BseDI CCNNGG 4 cut(s) 255, 583, 634, 925
BseGI GGATG 6 cut(s) 27, 48, 370, 751, 844, 905
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 7 cut(s) 7, 52, 74, 299, 651, 671, 924
BseSI GKGCMC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 895
BshFI GGCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 2 cut(s) 583, 688
BsiSI CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 109, 166
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 1 cut(s) 260
BsoBI CYCGRG 2 cut(s) 583, 688
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 5 cut(s) 482, 671, 721, 772, 929
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 7 cut(s) 429, 447, 459, 462, 465, 474, 492
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 751
BspLI GGNNCC 4 cut(s) 72, 78, 276, 899
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 2 cut(s) 490, 937
BspT104I TTCGAA 1 cut(s) 315
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 4 cut(s) 255, 583, 634, 925
BssMI GATC 5 cut(s) 482, 671, 721, 772, 929
BssT1I CCWWGG 2 cut(s) 255, 925
Bst2UI CCWGG 2 cut(s) 97, 812
Bst4CI ACNGT 3 cut(s) 377, 719, 803
Bst6I CTCTTC 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 8, 759
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 6 cut(s) 27, 48, 370, 751, 844, 905
BstKTI GATC 5 cut(s) 485, 674, 724, 775, 932
BstMAI GTCTC 2 cut(s) 109, 166
BstMBI GATC 5 cut(s) 482, 671, 721, 772, 929
BstMCI CGRYCG 1 cut(s) 895
BstMWI GCNNNNNNNGC 3 cut(s) 471, 755, 821
BstNI CCWGG 2 cut(s) 97, 812
BstSCI CCNGG 5 cut(s) 95, 237, 582, 583, 810
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 1 cut(s) 929
BstYI RGATCY 1 cut(s) 929
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 6 cut(s) 27, 48, 370, 751, 844, 905
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 631
Cfr9I CCCGGG 1 cut(s) 583
CseI GACGC 2 cut(s) 152, 421
CsiI ACCWGGT 1 cut(s) 95
Csp6I GTAC 1 cut(s) 546
CviAII CATG 3 cut(s) 39, 361, 926
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 8, 759
DpnI GATC 5 cut(s) 484, 673, 723, 774, 931
DpnII GATC 5 cut(s) 482, 671, 721, 772, 929
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 2 cut(s) 480, 507
Eco130I CCWWGG 2 cut(s) 255, 925
Eco47I GGWCC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 2 cut(s) 583, 688
EcoRII CCWGG 2 cut(s) 95, 810
EcoT14I CCWWGG 2 cut(s) 255, 925
ErhI CCWWGG 2 cut(s) 255, 925
FaeI CATG 3 cut(s) 42, 364, 929
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 38, 360, 925
FauI CCCGC 2 cut(s) 440, 467
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 460, 463, 957
FokI GGATG 6 cut(s) 14, 55, 377, 758, 851, 892
Fsp4HI GCNGC 3 cut(s) 460, 463, 957
FspBI CTAG 3 cut(s) 90, 167, 336
GluI GCNGC 3 cut(s) 460, 463, 957
HaeIII GGCC 1 cut(s) 260
HapII CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
HgaI GACGC 2 cut(s) 152, 421
Hin1II CATG 3 cut(s) 42, 364, 929
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 59, 170, 877
HpaII CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
HphI GGTGA 5 cut(s) 123, 380, 430, 731, 929
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 5 cut(s) 9, 175, 487, 564, 635
Hpy188III TCNNGA 3 cut(s) 31, 90, 303
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 377, 719, 803
HpyCH4IV ACGT 1 cut(s) 883
HpyCH4V TGCA 5 cut(s) 54, 120, 409, 614, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 755, 821
HpyF3I CTNAG 2 cut(s) 8, 759
HpySE526I ACGT 1 cut(s) 883
Hsp92II CATG 3 cut(s) 42, 364, 929
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 5 cut(s) 482, 671, 721, 772, 929
LmnI GCTCC 4 cut(s) 20, 70, 76, 897
LweI GCATC 4 cut(s) 541, 685, 736, 829
MabI ACCWGGT 1 cut(s) 95
MaeI CTAG 3 cut(s) 90, 167, 336
MaeII ACGT 1 cut(s) 883
MalI GATC 5 cut(s) 484, 673, 723, 774, 931
MboI GATC 5 cut(s) 482, 671, 721, 772, 929
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 763, 916
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 198, 211
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 4 cut(s) 213, 783, 950, 964
MslI CAYNNNNRTG 1 cut(s) 744
MspI CCGG 6 cut(s) 68, 74, 238, 278, 584, 895
MspR9I CCNGG 5 cut(s) 97, 239, 584, 585, 812
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 2 cut(s) 97, 812
MwoI GCNNNNNNNGC 3 cut(s) 471, 755, 821
NciI CCSGG 3 cut(s) 239, 584, 585
NcoI CCATGG 1 cut(s) 925
NdeI CATATG 1 cut(s) 820
NdeII GATC 5 cut(s) 482, 671, 721, 772, 929
NlaIII CATG 3 cut(s) 42, 364, 929
NlaIV GGNNCC 4 cut(s) 72, 78, 276, 899
NmeAIII GCCGAG 1 cut(s) 286
NspV TTCGAA 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 170, 877
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 3 cut(s) 461, 464, 958
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 95, 810
PspGI CCWGG 2 cut(s) 95, 810
PspN4I GGNNCC 4 cut(s) 72, 78, 276, 899
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 1 cut(s) 958
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 929
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 4 cut(s) 213, 783, 950, 964
SatI GCNGC 3 cut(s) 460, 463, 957
Sau3AI GATC 5 cut(s) 482, 671, 721, 772, 929
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 97, 239, 584, 585, 812
SduI GDGCHC 1 cut(s) 122
SexAI ACCWGGT 1 cut(s) 95
SfaNI GCATC 4 cut(s) 541, 685, 736, 829
SfcI CTRYAG 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 315
SinI GGWCC 1 cut(s) 631
SmaI CCCGGG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 2 cut(s) 763, 916
SsiI CCGC 7 cut(s) 429, 447, 459, 462, 465, 474, 492
SspMI CTAG 3 cut(s) 90, 167, 336
StyD4I CCNGG 5 cut(s) 95, 237, 582, 583, 810
StyI CCWWGG 2 cut(s) 255, 925
TaaI ACNGT 3 cut(s) 377, 719, 803
TaiI ACGT 1 cut(s) 886
TaqI TCGA 6 cut(s) 20, 229, 248, 302, 315, 914
TasI AATT 2 cut(s) 763, 916
TatI WGTACW 1 cut(s) 545
TauI GCSGC 2 cut(s) 462, 465
TfiI GAWTC 2 cut(s) 170, 877
Tru1I TTAA 4 cut(s) 213, 783, 950, 964
Tru9I TTAA 4 cut(s) 213, 783, 950, 964
TscAI CASTG 1 cut(s) 56
TseI GCWGC 1 cut(s) 956
TspDTI ATGAA 2 cut(s) 807, 876
TspMI CCCGGG 1 cut(s) 583
TspRI CASTG 1 cut(s) 56
VneI GTGCAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 1 cut(s) 916
XbaI TCTAGA 1 cut(s) 89
XmaI CCCGGG 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 3 cut(s) 90, 167, 336
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.